Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 N 1.46501 * 109.47143 * 90.00205 * 7 6 2 9 9 S 1.65594 * 120.00362 * 165.00105 * 8 7 6 10 10 O 1.42093 * 104.28029 * 181.07070 * 9 8 7 11 11 O 1.42103 * 104.27287 * 308.92694 * 9 8 7 12 12 C 1.81397 * 104.45144 * 64.99354 * 9 8 7 13 13 C 1.52998 * 109.47152 * 180.02562 * 12 9 8 14 14 C 1.50707 * 109.47110 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99941 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00384 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99675 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47089 * 90.00447 * 18 16 14 20 20 H 1.48502 * 109.46877 * 210.00322 * 18 16 14 21 21 H 1.48498 * 109.47164 * 330.00167 * 18 16 14 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 27 27 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 28 28 H 0.97001 * 120.00029 * 344.99537 * 8 7 6 29 29 H 1.08999 * 109.47566 * 300.00600 * 12 9 8 30 30 H 1.09003 * 109.47239 * 60.00479 * 12 9 8 31 31 H 1.09000 * 109.47408 * 299.99834 * 13 12 9 32 32 H 1.08995 * 109.47418 * 60.00350 * 13 12 9 33 33 H 0.96996 * 120.00047 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 7 1.5132 -2.9880 -1.3728 9 16 1.2879 -4.5980 -1.6880 10 8 1.1876 -4.6672 -3.1037 11 8 2.3490 -5.2422 -0.9964 12 6 -0.3061 -4.9916 -0.9169 13 6 -0.6299 -6.4700 -1.1411 14 6 -1.9545 -6.7969 -0.5010 15 1 -2.5100 -6.0270 0.0139 16 6 -2.4577 -8.0785 -0.5736 17 7 -1.7815 -9.0159 -1.2010 18 14 -4.0993 -8.4837 0.2205 19 1 -5.1915 -8.2657 -0.7616 20 1 -4.1013 -9.9035 0.6560 21 1 -4.3098 -7.6044 1.3985 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 4.2059 1.8027 0.0057 26 1 2.3811 -3.1881 0.5260 27 1 0.7217 -2.5441 0.5181 28 1 1.5314 -2.3489 -2.1023 29 1 -0.2519 -4.7901 0.1529 30 1 -1.0875 -4.3764 -1.3632 31 1 -0.6842 -6.6719 -2.2109 32 1 0.1514 -7.0849 -0.6945 33 1 -2.1353 -9.9176 -1.2517 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111340378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = -40.209265 kcal Electronic energy + Delta-G solvation = -18478.235639 eV Core-core repulsion = 15371.752275 eV Total energy + Delta-G solvation = -3106.483364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19032 -36.68646 -35.77448 -35.44633 -33.92565 -31.97789 -31.19780 -28.74848 -25.64817 -25.56407 -24.13743 -21.71561 -19.32245 -19.06025 -18.45088 -17.48254 -16.69836 -16.24446 -15.84683 -15.35320 -15.07433 -14.63713 -14.51233 -13.88460 -13.63966 -13.41648 -13.14778 -12.78357 -12.56658 -12.48896 -11.79324 -11.72804 -11.65223 -11.57927 -11.46079 -11.10411 -10.99395 -10.45987 -10.41847 -9.94568 -9.83996 -9.63632 -9.55080 -9.09886 -9.02311 -8.52630 -6.14731 -4.20569 0.30867 0.76869 1.09064 1.48415 2.46742 3.13989 3.24679 3.31130 3.33480 3.92504 4.17776 4.34974 4.42611 4.63545 4.79377 4.86275 5.15390 5.20488 5.21711 5.40342 5.53344 5.56442 5.60834 5.65629 5.82033 6.01943 6.43848 6.96068 7.26989 7.32872 7.41737 7.77991 8.14446 8.82836 9.44458 10.96267 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.003754 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.905334 B = 7457.726199 C = 8083.927201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.079 3.921 3 N -0.471 5.471 4 C 0.018 3.982 5 S 0.142 5.858 6 C -0.235 4.235 7 C 0.196 3.804 8 N -1.125 6.125 9 S 2.591 3.409 10 O -0.964 6.964 11 O -0.965 6.965 12 C -0.588 4.588 13 C 0.027 3.973 14 C -0.521 4.521 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.200 0.800 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.414 0.586 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.606 18.996 3.642 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 N -0.185 5.185 4 C -0.280 4.280 5 S 0.396 5.604 6 C -0.357 4.357 7 C 0.067 3.933 8 N -0.882 5.882 9 S 2.689 3.311 10 O -0.954 6.954 11 O -0.955 6.955 12 C -0.722 4.722 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.216 0.784 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.247 0.753 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.026 18.165 3.269 21.004 hybrid contribution -2.143 0.391 0.428 2.220 sum 7.883 18.556 3.697 20.497 Atomic orbital electron populations 1.20464 0.86695 1.03714 1.03490 1.20350 0.98468 0.86024 1.00659 1.66244 1.05066 1.31509 1.15660 1.28376 0.95357 1.00456 1.03780 1.84245 1.06701 1.02792 1.66690 1.25676 0.95472 1.00198 1.14398 1.19528 1.01070 0.88944 0.83731 1.55960 1.90892 1.28419 1.12939 1.05662 0.78323 0.72177 0.74980 1.93562 1.88172 1.84646 1.29019 1.93544 1.52515 1.73529 1.75912 1.30446 1.18578 1.10988 1.12184 1.18975 0.99215 0.84098 0.98892 1.20993 1.03902 0.95350 1.35790 0.92007 1.25069 0.97834 0.96299 0.95273 1.69951 1.38360 1.02553 1.41936 0.86468 0.83480 0.77731 0.79590 1.20467 1.21011 1.19746 0.90171 0.90087 0.90488 0.78374 0.88869 0.89336 0.75264 0.86237 0.85919 0.94799 0.94761 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.06 36.01 0.36 -0.36 16 2 C 0.08 0.83 6.74 -84.22 -0.57 0.26 16 3 N -0.47 -5.12 10.53 -11.90 -0.13 -5.25 16 4 C 0.02 0.15 12.23 51.58 0.63 0.78 16 5 S 0.14 1.28 23.22 -107.50 -2.50 -1.22 16 6 C -0.23 -2.44 5.99 -35.92 -0.21 -2.66 16 7 C 0.20 2.11 6.35 -5.19 -0.03 2.07 16 8 N -1.12 -13.87 5.88 -11.66 -0.07 -13.94 16 9 S 2.59 44.04 5.46 -107.50 -0.59 43.45 16 10 O -0.96 -19.44 18.08 -57.54 -1.04 -20.48 16 11 O -0.97 -19.19 17.50 -57.54 -1.01 -20.20 16 12 C -0.59 -10.56 6.01 37.16 0.22 -10.34 16 13 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 14 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.60 6.71 -51.92 -0.35 0.25 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.20 0.99 8.06 -52.48 -0.42 0.56 16 26 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 27 H 0.09 0.77 6.75 -51.93 -0.35 0.42 16 28 H 0.41 4.54 8.61 -34.46 -0.30 4.25 16 29 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 30 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -35.38 314.45 -8.91 -44.29 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.90 Total: 0.72 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -0.15 Total: -22.56 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.54 Total: -44.59 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -2.05 Total: -40.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 45.32 SS G_CDS: -3.08 Total: 42.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.38 -8.91 -44.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111340378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds