Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 N 1.46501 * 109.47143 * 90.00205 * 7 6 2 9 9 S 1.65594 * 120.00362 * 165.00105 * 8 7 6 10 10 O 1.42093 * 104.28029 * 181.07070 * 9 8 7 11 11 O 1.42103 * 104.27287 * 308.92694 * 9 8 7 12 12 C 1.81397 * 104.45144 * 64.99354 * 9 8 7 13 13 C 1.52998 * 109.47152 * 180.02562 * 12 9 8 14 14 C 1.50707 * 109.47110 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99941 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00384 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99675 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47089 * 90.00447 * 18 16 14 20 20 H 1.48502 * 109.46877 * 210.00322 * 18 16 14 21 21 H 1.48498 * 109.47164 * 330.00167 * 18 16 14 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 27 27 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 28 28 H 0.97001 * 120.00029 * 344.99537 * 8 7 6 29 29 H 1.08999 * 109.47566 * 300.00600 * 12 9 8 30 30 H 1.09003 * 109.47239 * 60.00479 * 12 9 8 31 31 H 1.09000 * 109.47408 * 299.99834 * 13 12 9 32 32 H 1.08995 * 109.47418 * 60.00350 * 13 12 9 33 33 H 0.96996 * 120.00047 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 7 1.5132 -2.9880 -1.3728 9 16 1.2879 -4.5980 -1.6880 10 8 1.1876 -4.6672 -3.1037 11 8 2.3490 -5.2422 -0.9964 12 6 -0.3061 -4.9916 -0.9169 13 6 -0.6299 -6.4700 -1.1411 14 6 -1.9545 -6.7969 -0.5010 15 1 -2.5100 -6.0270 0.0139 16 6 -2.4577 -8.0785 -0.5736 17 7 -1.7815 -9.0159 -1.2010 18 14 -4.0993 -8.4837 0.2205 19 1 -5.1915 -8.2657 -0.7616 20 1 -4.1013 -9.9035 0.6560 21 1 -4.3098 -7.6044 1.3985 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 4.2059 1.8027 0.0057 26 1 2.3811 -3.1881 0.5260 27 1 0.7217 -2.5441 0.5181 28 1 1.5314 -2.3489 -2.1023 29 1 -0.2519 -4.7901 0.1529 30 1 -1.0875 -4.3764 -1.3632 31 1 -0.6842 -6.6719 -2.2109 32 1 0.1514 -7.0849 -0.6945 33 1 -2.1353 -9.9176 -1.2517 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111340378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = -67.873504 kcal Electronic energy + Delta-G solvation = -18479.435251 eV Core-core repulsion = 15371.752275 eV Total energy + Delta-G solvation = -3107.682976 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91435 -38.18052 -37.05029 -36.64925 -35.86472 -33.09744 -32.74966 -29.52888 -27.56481 -26.29540 -24.92122 -23.57656 -20.39321 -20.05530 -19.28967 -18.98812 -18.21185 -17.49482 -17.06879 -16.54843 -16.45385 -16.13212 -15.56861 -15.03812 -14.68870 -14.45984 -14.31437 -14.04966 -13.69828 -13.41433 -13.22709 -13.16432 -13.10593 -12.96077 -12.90386 -12.75635 -12.21198 -12.19827 -12.10644 -11.71431 -11.18491 -10.64253 -10.62173 -10.46085 -10.32830 -9.73768 -8.23605 -6.37176 -0.75631 -0.27653 0.39843 0.78903 1.43448 1.44778 1.55782 1.67634 1.97958 2.40171 2.81337 3.10367 3.24473 3.31940 3.64549 3.98968 4.05753 4.17367 4.26029 4.41788 4.49120 4.69999 4.80363 4.83560 4.90619 4.99645 5.31090 5.32362 5.37276 5.71440 6.00691 6.08987 6.71422 6.77142 7.33128 8.88632 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.003754 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.905334 B = 7457.726199 C = 8083.927201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.077 3.923 3 N -0.501 5.501 4 C 0.031 3.969 5 S 0.143 5.857 6 C -0.254 4.254 7 C 0.187 3.813 8 N -1.106 6.106 9 S 2.620 3.380 10 O -0.998 6.998 11 O -0.996 6.996 12 C -0.585 4.585 13 C 0.018 3.982 14 C -0.536 4.536 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.256 1.256 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.232 0.768 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.423 0.577 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.005 0.995 32 H 0.008 0.992 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 21.009 4.838 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.057 4.057 3 N -0.215 5.215 4 C -0.266 4.266 5 S 0.398 5.602 6 C -0.376 4.376 7 C 0.060 3.940 8 N -0.867 5.867 9 S 2.717 3.283 10 O -0.989 6.989 11 O -0.986 6.986 12 C -0.717 4.717 13 C -0.021 4.021 14 C -0.575 4.575 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.179 1.179 22 H 0.103 0.897 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.248 0.752 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.259 0.741 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.248 20.191 4.466 22.653 hybrid contribution -1.800 -0.114 0.062 1.805 sum 7.448 20.077 4.528 21.887 Atomic orbital electron populations 1.20571 0.85709 1.04438 1.04000 1.20647 0.99335 0.85960 0.99786 1.66317 1.06037 1.31875 1.17262 1.28969 0.95234 1.01049 1.01338 1.84266 1.06128 1.03283 1.66538 1.25601 0.96143 0.99803 1.16087 1.19771 1.02601 0.89225 0.82396 1.55449 1.90334 1.26553 1.14409 1.04508 0.77352 0.72881 0.73572 1.93510 1.88388 1.85751 1.31211 1.93504 1.53565 1.75193 1.76307 1.30320 1.20151 1.06627 1.14636 1.18843 0.98122 0.88423 0.96734 1.21537 1.04706 0.95883 1.35389 0.90304 1.26109 1.01939 0.96372 0.95889 1.70102 1.40560 1.03053 1.43789 0.85329 0.78480 0.77487 0.79056 1.19772 1.21115 1.17946 0.89691 0.88882 0.90291 0.75209 0.89227 0.86763 0.74080 0.83363 0.83451 0.97639 0.97382 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.06 71.24 0.72 -0.59 16 2 C 0.08 1.45 6.74 41.52 0.28 1.73 16 3 N -0.50 -9.85 10.53 -191.55 -2.02 -11.87 16 4 C 0.03 0.46 12.23 130.65 1.60 2.06 16 5 S 0.14 2.33 23.22 -56.49 -1.31 1.02 16 6 C -0.25 -4.78 5.99 24.64 0.15 -4.63 16 7 C 0.19 3.63 6.35 85.63 0.54 4.18 16 8 N -1.11 -25.38 5.88 -190.79 -1.12 -26.50 16 9 S 2.62 87.73 5.46 -56.49 -0.31 87.42 16 10 O -1.00 -40.43 18.08 -127.65 -2.31 -42.74 16 11 O -1.00 -39.67 17.50 -127.65 -2.23 -41.90 16 12 C -0.58 -20.24 6.01 71.98 0.43 -19.81 16 13 C 0.02 0.89 4.98 29.85 0.15 1.04 16 14 C -0.54 -28.75 9.11 25.60 0.23 -28.51 16 15 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -56.23 13.29 21.45 0.28 -55.94 16 18 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.09 1.11 6.71 -2.38 -0.02 1.10 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.23 1.57 8.06 -2.91 -0.02 1.54 16 26 H 0.09 1.83 7.69 -2.39 -0.02 1.81 16 27 H 0.11 1.61 6.75 -2.39 -0.02 1.60 16 28 H 0.42 8.52 8.61 -96.75 -0.83 7.69 16 29 H 0.15 4.23 8.14 -2.39 -0.02 4.21 16 30 H 0.15 4.36 8.14 -2.39 -0.02 4.34 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -77.11 314.45 -2.12 -79.23 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.30 Total: 11.18 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 4.56 Total: -44.34 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -2.85 Total: -94.31 kcal Atomic # 8 Polarization: -80.10 SS G_CDS: -4.54 Total: -84.64 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 90.06 SS G_CDS: -1.62 Total: 88.44 kcal Total: -77.11 -2.12 -79.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111340378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.355 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds