Wall clock time and date at job start Tue Mar 31 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54521 * 291.62885 * 12 11 10 14 14 O 1.42108 * 110.54484 * 68.37707 * 12 11 10 15 15 C 1.76198 * 104.45172 * 180.02562 * 12 11 10 16 16 C 1.38205 * 120.00090 * 114.72475 * 15 12 11 17 17 C 1.38427 * 120.00132 * 179.77219 * 16 15 12 18 18 F 1.35097 * 120.00300 * 180.27011 * 17 16 15 19 19 C 1.38477 * 119.99539 * 0.52668 * 17 16 15 20 20 C 1.38163 * 120.00285 * 359.72631 * 19 17 16 21 21 C 1.38428 * 119.99717 * 295.00380 * 15 12 11 22 22 F 1.35094 * 120.00416 * 359.97314 * 21 15 12 23 23 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 28 28 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 29 29 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 30 30 H 1.08001 * 119.99865 * 0.02562 * 16 15 12 31 31 H 1.08005 * 119.99571 * 179.70375 * 19 17 16 32 32 H 1.07998 * 119.99756 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6588 -6.3660 0.0019 13 8 3.3557 -6.4270 -1.2350 14 8 3.3555 -6.4258 1.2391 15 6 1.6476 -7.8089 0.0019 16 6 1.6614 -8.6624 -1.0851 17 6 0.8705 -9.7985 -1.0832 18 9 0.8881 -10.6356 -2.1434 19 6 0.0573 -10.0741 0.0033 20 6 0.0396 -9.2181 1.0877 21 6 0.8350 -8.0846 1.0881 22 9 0.8177 -7.2477 2.1485 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.8537 -5.0446 0.8914 29 1 0.8531 -5.0451 -0.8886 30 1 2.2923 -8.4450 -1.9343 31 1 -0.5633 -10.9580 0.0028 32 1 -0.5949 -9.4329 1.9348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112463419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:53 Heat of formation + Delta-G solvation = -143.524658 kcal Electronic energy + Delta-G solvation = -20409.494573 eV Core-core repulsion = 16712.397979 eV Total energy + Delta-G solvation = -3697.096594 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.52969 -49.34608 -39.19004 -37.00706 -35.90174 -34.74299 -32.23253 -32.09763 -30.49595 -27.89002 -24.54445 -23.59195 -23.30260 -20.65623 -19.42415 -18.37698 -17.85596 -17.75865 -16.72113 -16.32303 -16.14991 -15.80017 -15.76195 -15.56542 -14.88283 -14.61735 -14.49568 -14.33859 -13.77767 -13.18206 -12.67356 -12.60625 -12.38875 -12.28900 -12.03666 -11.92931 -11.85340 -11.33342 -10.98525 -10.93715 -10.89059 -10.44724 -10.10695 -9.98866 -9.43549 -9.18564 -9.11284 -8.42113 -6.07152 -4.10356 -0.07743 0.19749 0.45845 2.62849 2.81815 3.30200 3.36469 3.40440 3.48882 3.62259 3.80685 3.97350 4.28572 4.37330 4.41464 4.62250 4.86668 5.04895 5.07218 5.26023 5.28960 5.29713 5.42017 5.49139 5.78725 6.18652 6.21200 6.37471 6.81233 7.54404 7.63531 7.90526 8.30182 8.95701 9.54502 11.04050 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.003611 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.921870 B = 7751.782390 C = 7883.799178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.107 4.107 11 C -0.580 4.580 12 S 2.479 3.521 13 O -0.934 6.934 14 O -0.926 6.926 15 C -0.670 4.670 16 C -0.030 4.030 17 C 0.070 3.930 18 F -0.130 7.130 19 C -0.077 4.077 20 C -0.143 4.143 21 C 0.182 3.818 22 F -0.113 7.113 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.169 0.831 31 H 0.154 0.846 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -21.023 0.104 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.713 4.713 12 S 2.659 3.341 13 O -0.931 6.931 14 O -0.924 6.924 15 C -0.753 4.753 16 C -0.049 4.049 17 C 0.050 3.950 18 F -0.108 7.108 19 C -0.095 4.095 20 C -0.162 4.162 21 C 0.161 3.839 22 F -0.091 7.091 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.186 0.814 31 H 0.171 0.829 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.073 -21.000 0.114 21.028 hybrid contribution -0.624 0.596 0.018 0.863 sum -1.697 -20.405 0.132 20.475 Atomic orbital electron populations 1.69956 1.06101 1.26825 1.50502 1.25018 0.94885 0.99380 0.95048 0.86545 0.79888 0.83126 0.78195 1.20564 1.21179 1.19704 1.21237 0.93289 0.90776 1.51205 0.92274 1.19085 0.93515 0.90259 0.97949 1.21595 0.99548 0.91048 1.02427 1.30273 1.15308 1.13660 1.12044 1.06387 0.76895 0.75763 0.75087 1.93548 1.69371 1.85866 1.44318 1.93597 1.69099 1.85664 1.44008 1.30970 1.18961 1.24692 1.00630 1.20898 0.95727 0.90871 0.97379 1.17680 1.00464 0.90808 0.86077 1.91552 1.95476 1.69683 1.54120 1.21298 0.96943 0.99888 0.91416 1.21132 1.00912 0.93667 1.00493 1.17113 0.94598 0.89103 0.83061 1.91655 1.94708 1.69277 1.53478 0.92870 0.95954 0.95905 0.91160 0.91165 0.84721 0.84660 0.81405 0.82855 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.75 4.97 -27.89 -0.14 0.61 16 10 C -0.11 -2.09 5.16 -26.73 -0.14 -2.23 16 11 C -0.58 -8.71 5.98 37.16 0.22 -8.48 16 12 S 2.48 36.48 4.80 -107.50 -0.52 35.97 16 13 O -0.93 -15.31 16.74 -57.54 -0.96 -16.28 16 14 O -0.93 -16.25 17.35 -57.54 -1.00 -17.25 16 15 C -0.67 -8.18 5.58 -39.52 -0.22 -8.40 16 16 C -0.03 -0.32 9.48 -39.52 -0.37 -0.70 16 17 C 0.07 0.67 7.30 -39.42 -0.29 0.38 16 18 F -0.13 -1.27 17.27 2.25 0.04 -1.23 16 19 C -0.08 -0.57 10.02 -39.52 -0.40 -0.97 16 20 C -0.14 -1.17 10.02 -39.52 -0.40 -1.57 16 21 C 0.18 2.05 7.19 -39.42 -0.28 1.77 16 22 F -0.11 -1.42 15.74 2.25 0.04 -1.38 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.13 1.84 7.59 -51.92 -0.39 1.44 16 29 H 0.14 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.17 1.71 7.21 -52.49 -0.38 1.33 16 31 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -33.48 303.99 -7.80 -41.29 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -3.27 Total: -3.57 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -2.42 Total: -32.93 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.96 Total: -33.52 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.07 Total: -2.62 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 36.48 SS G_CDS: -0.52 Total: 35.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.48 -7.80 -41.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112463419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.236 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds