Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54521 * 291.62885 * 12 11 10 14 14 O 1.42108 * 110.54484 * 68.37707 * 12 11 10 15 15 C 1.76198 * 104.45172 * 180.02562 * 12 11 10 16 16 C 1.38205 * 120.00090 * 114.72475 * 15 12 11 17 17 C 1.38427 * 120.00132 * 179.77219 * 16 15 12 18 18 F 1.35097 * 120.00300 * 180.27011 * 17 16 15 19 19 C 1.38477 * 119.99539 * 0.52668 * 17 16 15 20 20 C 1.38163 * 120.00285 * 359.72631 * 19 17 16 21 21 C 1.38428 * 119.99717 * 295.00380 * 15 12 11 22 22 F 1.35094 * 120.00416 * 359.97314 * 21 15 12 23 23 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 28 28 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 29 29 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 30 30 H 1.08001 * 119.99865 * 0.02562 * 16 15 12 31 31 H 1.08005 * 119.99571 * 179.70375 * 19 17 16 32 32 H 1.07998 * 119.99756 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6588 -6.3660 0.0019 13 8 3.3557 -6.4270 -1.2350 14 8 3.3555 -6.4258 1.2391 15 6 1.6476 -7.8089 0.0019 16 6 1.6614 -8.6624 -1.0851 17 6 0.8705 -9.7985 -1.0832 18 9 0.8881 -10.6356 -2.1434 19 6 0.0573 -10.0741 0.0033 20 6 0.0396 -9.2181 1.0877 21 6 0.8350 -8.0846 1.0881 22 9 0.8177 -7.2477 2.1485 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.8537 -5.0446 0.8914 29 1 0.8531 -5.0451 -0.8886 30 1 2.2923 -8.4450 -1.9343 31 1 -0.5633 -10.9580 0.0028 32 1 -0.5949 -9.4329 1.9348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112463419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = -165.529554 kcal Electronic energy + Delta-G solvation = -20410.448777 eV Core-core repulsion = 16712.397979 eV Total energy + Delta-G solvation = -3698.050798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.41251 -50.08731 -39.95077 -38.27440 -37.17916 -36.49919 -34.18671 -32.86032 -31.27139 -29.70048 -25.83175 -24.99496 -24.08288 -22.35236 -20.47192 -19.39988 -18.71530 -18.66321 -18.49348 -17.43363 -17.09856 -16.96849 -16.85122 -16.59505 -16.45113 -15.79227 -15.62216 -15.39694 -14.50423 -14.44786 -14.11946 -13.99285 -13.54978 -13.46219 -13.28129 -13.24494 -13.17002 -12.99545 -12.75671 -12.65341 -12.18494 -11.93132 -11.75774 -11.37804 -11.11683 -10.76911 -10.56204 -9.91904 -8.21671 -6.32430 -1.17276 -0.68276 -0.28663 1.41911 1.42436 1.53861 1.67336 1.92267 2.40878 2.55057 2.73299 2.89601 3.11942 3.12545 3.39661 3.64082 3.69732 3.82451 3.92761 4.17664 4.35687 4.43022 4.62918 4.67283 4.68878 4.81332 4.87835 5.04737 5.46397 5.47200 5.63064 5.80188 6.20088 6.83053 7.36877 8.89888 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.003611 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.921870 B = 7751.782390 C = 7883.799178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.108 4.108 11 C -0.582 4.582 12 S 2.500 3.500 13 O -0.956 6.956 14 O -0.960 6.960 15 C -0.677 4.677 16 C -0.043 4.043 17 C 0.067 3.933 18 F -0.131 7.131 19 C -0.055 4.055 20 C -0.130 4.130 21 C 0.162 3.838 22 F -0.125 7.125 23 H 0.265 0.735 24 H 0.007 0.993 25 H 0.004 0.996 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.196 0.804 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -22.666 0.231 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.714 4.714 12 S 2.684 3.316 13 O -0.953 6.953 14 O -0.957 6.957 15 C -0.765 4.765 16 C -0.062 4.062 17 C 0.046 3.954 18 F -0.109 7.109 19 C -0.073 4.073 20 C -0.149 4.149 21 C 0.142 3.858 22 F -0.103 7.103 23 H 0.074 0.926 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.165 0.835 29 H 0.175 0.825 30 H 0.185 0.815 31 H 0.213 0.787 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.687 -22.603 0.238 22.667 hybrid contribution -0.503 0.958 -0.041 1.083 sum -2.190 -21.644 0.197 21.756 Atomic orbital electron populations 1.70070 1.07631 1.27888 1.51382 1.25921 0.95791 1.03187 0.94575 0.85480 0.78718 0.78536 0.78553 1.19714 1.20639 1.18878 1.21734 0.93813 0.92393 1.51051 0.92003 1.18980 0.94026 0.91636 0.96207 1.21394 0.98826 0.91722 1.02708 1.30209 1.15518 1.11802 1.13845 1.05276 0.76530 0.75996 0.73845 1.93512 1.70425 1.86437 1.44951 1.93552 1.70458 1.86416 1.45287 1.30333 1.20150 1.23798 1.02193 1.20960 0.96515 0.91624 0.97118 1.17804 1.00559 0.90278 0.86723 1.91556 1.95486 1.69530 1.54363 1.21767 0.95528 1.00402 0.89620 1.21550 0.99809 0.91886 1.01631 1.17468 0.95524 0.90281 0.82571 1.91626 1.94871 1.69901 1.53943 0.92643 0.97503 0.97722 0.91194 0.90757 0.83497 0.82542 0.81466 0.78732 0.79064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.11 -4.30 5.16 30.60 0.16 -4.14 16 11 C -0.58 -17.59 5.98 71.98 0.43 -17.16 16 12 S 2.50 74.21 4.80 -56.49 -0.27 73.94 16 13 O -0.96 -31.75 16.74 -127.65 -2.14 -33.89 16 14 O -0.96 -34.27 17.35 -127.65 -2.22 -36.48 16 15 C -0.68 -15.96 5.58 22.31 0.12 -15.83 16 16 C -0.04 -0.89 9.48 22.31 0.21 -0.67 16 17 C 0.07 1.10 7.30 22.37 0.16 1.26 16 18 F -0.13 -2.24 17.27 44.97 0.78 -1.46 16 19 C -0.05 -0.58 10.02 22.31 0.22 -0.36 16 20 C -0.13 -1.64 10.02 22.31 0.22 -1.41 16 21 C 0.16 3.38 7.19 22.37 0.16 3.54 16 22 F -0.13 -3.02 15.74 44.97 0.71 -2.32 16 23 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 26 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.15 4.04 7.59 -2.39 -0.02 4.03 16 29 H 0.16 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.17 3.36 7.21 -2.91 -0.02 3.34 16 31 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -73.23 303.99 2.86 -70.37 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.14 Total: 2.34 kcal Atomic # 6 Polarization: -65.85 SS G_CDS: 2.54 Total: -63.31 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 8 Polarization: -66.02 SS G_CDS: -4.35 Total: -70.37 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 1.48 Total: -3.78 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 74.21 SS G_CDS: -0.27 Total: 73.94 kcal Total: -73.23 2.86 -70.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112463419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.157 kcal (2) G-P(sol) polarization free energy of solvation -73.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds