Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99991 * 3 2 1 6 6 H 1.48502 * 109.46906 * 149.99898 * 3 2 1 7 7 C 1.38990 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.37315 * 119.99986 * 359.72326 * 7 2 1 10 10 C 1.36493 * 126.06496 * 180.27908 * 9 7 2 11 11 C 1.35709 * 107.50277 * 180.02562 * 10 9 7 12 12 N 1.40494 * 126.08487 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99845 * 180.02562 * 12 11 10 14 14 O 1.21760 * 119.99764 * 359.97438 * 13 12 11 15 15 C 1.46222 * 120.00106 * 179.97438 * 13 12 11 16 16 C 1.35249 * 119.99805 * 179.97438 * 15 13 12 17 17 C 1.46403 * 119.99586 * 179.97438 * 16 15 13 18 18 N 1.30837 * 125.54733 * 179.97438 * 17 16 15 19 19 C 1.30818 * 115.80645 * 180.02562 * 18 17 16 20 20 C 1.34163 * 115.80843 * 0.02562 * 19 18 17 21 21 S 1.71060 * 109.15546 * 359.72618 * 20 19 18 22 22 C 1.40674 * 107.82489 * 359.97438 * 11 10 9 23 23 N 1.30902 * 108.38839 * 359.71474 * 22 11 10 24 24 H 0.97000 * 120.00417 * 0.02562 * 1 2 3 25 25 H 1.07999 * 126.24814 * 359.97438 * 10 9 7 26 26 H 0.96997 * 119.99906 * 359.97438 * 12 11 10 27 27 H 1.08001 * 119.99415 * 0.02562 * 15 13 12 28 28 H 1.07992 * 120.00555 * 0.02562 * 16 15 13 29 29 H 1.08001 * 122.10082 * 180.02562 * 19 18 17 30 30 H 1.07997 * 125.42243 * 180.02562 * 20 19 18 31 31 H 1.08000 * 125.80581 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0463 -1.4001 5 1 1.4444 2.6526 0.7000 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2038 -0.0001 9 7 1.3213 -2.3929 0.0047 10 6 1.8750 -3.6404 0.0102 11 6 0.8576 -4.5385 0.0135 12 7 0.9887 -5.9373 0.0190 13 6 -0.1106 -6.7171 0.0213 14 8 -1.2173 -6.2093 0.0192 15 6 0.0257 -8.1730 0.0264 16 6 -1.0775 -8.9554 0.0293 17 6 -0.9409 -10.4131 0.0339 18 7 -1.9299 -11.2697 0.0374 19 6 -1.5892 -12.5327 0.0417 20 6 -0.2710 -12.7822 0.0424 21 16 0.5809 -11.2989 0.0296 22 6 -0.3515 -3.8195 0.0106 23 7 -0.0715 -2.5408 0.0118 24 1 -0.4851 0.8400 -0.0004 25 1 2.9302 -3.8707 0.0108 26 1 1.8703 -6.3418 0.0203 27 1 1.0073 -8.6233 0.0288 28 1 -2.0590 -8.5051 0.0274 29 1 -2.3231 -13.3251 0.0445 30 1 0.1804 -13.7633 0.0454 31 1 -1.3422 -4.2494 0.0117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139350198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = 116.149682 kcal Electronic energy + Delta-G solvation = -18689.478826 eV Core-core repulsion = 15486.624494 eV Total energy + Delta-G solvation = -3202.854332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98739 -39.78906 -38.62455 -34.41441 -33.89867 -33.15618 -30.36226 -30.00589 -27.96129 -26.16151 -24.81826 -22.92671 -20.97459 -20.26183 -19.92539 -19.41155 -18.00783 -17.60956 -16.72269 -15.91057 -15.45273 -15.22249 -14.86377 -14.44777 -14.40985 -14.02992 -13.64973 -13.35374 -13.15484 -12.86478 -12.38253 -11.74805 -11.68640 -11.43875 -11.27873 -10.96484 -10.74473 -10.54117 -10.17981 -10.09324 -9.78450 -9.32690 -9.18045 -8.82071 -8.62057 -8.06891 -6.70450 -6.56747 -4.23390 -0.14504 0.96402 1.41421 1.47015 2.68039 2.95117 3.04467 3.09893 3.35313 3.41613 3.77785 3.82317 4.10412 4.45112 4.70377 4.79706 4.85472 4.92912 5.01414 5.08879 5.33886 5.69141 5.91205 6.11109 6.24115 6.45993 6.88655 6.94631 7.10524 7.22543 7.36557 7.84790 8.15230 8.26262 8.61118 8.81838 9.36406 9.65763 10.39154 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.066485 B = 0.002523 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.044407 B =11096.150251 C =11507.345556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.083 4.083 11 C -0.062 4.062 12 N -0.612 5.612 13 C 0.527 3.473 14 O -0.534 6.534 15 C -0.157 4.157 16 C -0.013 4.013 17 C 0.073 3.927 18 N -0.448 5.448 19 C 0.036 3.964 20 C -0.288 4.288 21 S 0.160 5.840 22 C -0.030 4.030 23 N -0.261 5.261 24 H 0.275 0.725 25 H 0.146 0.854 26 H 0.399 0.601 27 H 0.125 0.875 28 H 0.160 0.840 29 H 0.175 0.825 30 H 0.179 0.821 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -20.324 0.064 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.235 4.235 11 C -0.168 4.168 12 N -0.253 5.253 13 C 0.314 3.686 14 O -0.413 6.413 15 C -0.185 4.185 16 C -0.036 4.036 17 C -0.199 4.199 18 N -0.162 5.162 19 C -0.120 4.120 20 C -0.428 4.428 21 S 0.417 5.583 22 C -0.205 4.205 23 N -0.092 5.092 24 H 0.086 0.914 25 H 0.164 0.836 26 H 0.232 0.768 27 H 0.143 0.857 28 H 0.178 0.822 29 H 0.192 0.808 30 H 0.196 0.804 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.691 -18.192 0.058 18.562 hybrid contribution 0.735 -1.401 0.008 1.582 sum 4.427 -19.593 0.066 20.087 Atomic orbital electron populations 1.70214 1.06141 1.28052 1.35093 1.25655 0.95716 1.00309 0.95491 0.85821 0.79381 0.79928 0.78982 1.19570 1.20075 1.18802 1.19882 0.91676 0.80543 1.53359 0.86572 1.44568 1.04090 1.03330 1.38892 1.21270 0.96849 0.85360 1.19977 1.17255 0.94380 0.81130 1.24054 1.42372 1.08122 1.04714 1.70046 1.17794 0.84751 0.86213 0.79810 1.90748 1.25480 1.74744 1.50338 1.23048 0.98561 0.94079 1.02782 1.21387 1.01125 0.86076 0.95005 1.26319 0.90237 0.98108 1.05206 1.67040 1.32876 1.01644 1.14607 1.21751 0.94588 0.93214 1.02437 1.26572 0.98552 1.04559 1.13148 1.83874 1.12157 0.97014 1.65272 1.24165 0.98126 0.90703 1.07533 1.78268 0.90079 1.15106 1.25731 0.91407 0.83612 0.76813 0.85683 0.82219 0.80843 0.80360 0.80566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.43 11.81 55.50 0.66 -20.77 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.78 29.55 -169.99 -5.02 13.76 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.32 -8.46 10.25 -14.82 -0.15 -8.61 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.86 3.74 -11.40 -0.04 -3.90 16 10 C -0.08 -1.93 11.49 -16.38 -0.19 -2.12 16 11 C -0.06 -1.42 6.90 -83.87 -0.58 -2.00 16 12 N -0.61 -10.53 5.46 -11.31 -0.06 -10.59 16 13 C 0.53 8.98 7.71 -13.05 -0.10 8.88 16 14 O -0.53 -11.29 13.38 5.14 0.07 -11.22 16 15 C -0.16 -1.91 9.57 -37.44 -0.36 -2.26 16 16 C -0.01 -0.16 9.74 -37.36 -0.36 -0.52 16 17 C 0.07 0.82 7.41 -14.69 -0.11 0.71 16 18 N -0.45 -5.42 10.67 -11.69 -0.12 -5.55 16 19 C 0.04 0.33 11.24 -19.42 -0.22 0.11 16 20 C -0.29 -2.16 11.08 29.30 0.32 -1.84 16 21 S 0.16 1.32 22.05 -107.50 -2.37 -1.05 16 22 C -0.03 -0.78 10.85 -17.03 -0.18 -0.96 16 23 N -0.26 -7.58 10.39 30.80 0.32 -7.26 16 24 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 26 H 0.40 5.08 8.80 -40.82 -0.36 4.72 16 27 H 0.13 1.09 7.15 -52.49 -0.38 0.71 16 28 H 0.16 2.16 7.52 -52.49 -0.39 1.77 16 29 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.18 4.59 5.91 -52.49 -0.31 4.28 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -34.07 299.81 -6.34 -40.41 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -2.25 Total: 9.19 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.03 Total: -7.53 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.75 Total: -48.07 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.07 Total: -11.22 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.37 Total: -1.05 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.07 -6.34 -40.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139350198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.556 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds