Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99991 * 3 2 1 6 6 H 1.48502 * 109.46906 * 149.99898 * 3 2 1 7 7 C 1.38990 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.37315 * 119.99986 * 359.72326 * 7 2 1 10 10 C 1.36493 * 126.06496 * 180.27908 * 9 7 2 11 11 C 1.35709 * 107.50277 * 180.02562 * 10 9 7 12 12 N 1.40494 * 126.08487 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99845 * 180.02562 * 12 11 10 14 14 O 1.21760 * 119.99764 * 359.97438 * 13 12 11 15 15 C 1.46222 * 120.00106 * 179.97438 * 13 12 11 16 16 C 1.35249 * 119.99805 * 179.97438 * 15 13 12 17 17 C 1.46403 * 119.99586 * 179.97438 * 16 15 13 18 18 N 1.30837 * 125.54733 * 179.97438 * 17 16 15 19 19 C 1.30818 * 115.80645 * 180.02562 * 18 17 16 20 20 C 1.34163 * 115.80843 * 0.02562 * 19 18 17 21 21 S 1.71060 * 109.15546 * 359.72618 * 20 19 18 22 22 C 1.40674 * 107.82489 * 359.97438 * 11 10 9 23 23 N 1.30902 * 108.38839 * 359.71474 * 22 11 10 24 24 H 0.97000 * 120.00417 * 0.02562 * 1 2 3 25 25 H 1.07999 * 126.24814 * 359.97438 * 10 9 7 26 26 H 0.96997 * 119.99906 * 359.97438 * 12 11 10 27 27 H 1.08001 * 119.99415 * 0.02562 * 15 13 12 28 28 H 1.07992 * 120.00555 * 0.02562 * 16 15 13 29 29 H 1.08001 * 122.10082 * 180.02562 * 19 18 17 30 30 H 1.07997 * 125.42243 * 180.02562 * 20 19 18 31 31 H 1.08000 * 125.80581 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0463 -1.4001 5 1 1.4444 2.6526 0.7000 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2038 -0.0001 9 7 1.3213 -2.3929 0.0047 10 6 1.8750 -3.6404 0.0102 11 6 0.8576 -4.5385 0.0135 12 7 0.9887 -5.9373 0.0190 13 6 -0.1106 -6.7171 0.0213 14 8 -1.2173 -6.2093 0.0192 15 6 0.0257 -8.1730 0.0264 16 6 -1.0775 -8.9554 0.0293 17 6 -0.9409 -10.4131 0.0339 18 7 -1.9299 -11.2697 0.0374 19 6 -1.5892 -12.5327 0.0417 20 6 -0.2710 -12.7822 0.0424 21 16 0.5809 -11.2989 0.0296 22 6 -0.3515 -3.8195 0.0106 23 7 -0.0715 -2.5408 0.0118 24 1 -0.4851 0.8400 -0.0004 25 1 2.9302 -3.8707 0.0108 26 1 1.8703 -6.3418 0.0203 27 1 1.0073 -8.6233 0.0288 28 1 -2.0590 -8.5051 0.0274 29 1 -2.3231 -13.3251 0.0445 30 1 0.1804 -13.7633 0.0454 31 1 -1.3422 -4.2494 0.0117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139350198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = 91.353837 kcal Electronic energy + Delta-G solvation = -18690.554055 eV Core-core repulsion = 15486.624494 eV Total energy + Delta-G solvation = -3203.929560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70148 -40.61458 -40.19021 -35.99577 -35.02933 -34.91649 -32.24266 -30.93351 -29.65574 -27.37067 -26.41927 -24.06936 -22.80302 -21.42069 -21.09402 -20.95834 -19.32856 -18.80849 -17.99812 -17.40238 -16.99198 -16.49633 -16.10704 -15.83569 -15.52922 -15.27846 -15.01339 -14.89280 -14.49598 -14.33123 -13.46692 -13.31187 -13.25211 -12.90498 -12.83968 -12.42807 -12.07610 -11.88174 -11.56445 -11.00417 -10.88927 -10.83901 -10.76257 -10.50384 -10.08858 -9.40622 -8.49312 -8.45417 -6.22425 -0.95841 0.25907 0.54477 0.74686 1.30851 1.41322 1.59216 1.70858 1.90287 2.04444 2.18711 2.27230 2.68327 2.88670 3.11173 3.25324 3.91359 4.01291 4.23246 4.35503 4.45717 4.46680 4.63136 4.84429 4.99270 5.02952 5.18767 5.22718 5.31817 5.47598 5.97719 6.33031 6.66449 6.75148 6.76063 7.38128 7.48805 7.69872 8.54040 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.066485 B = 0.002523 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.044407 B =11096.150251 C =11507.345556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.243 1.243 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.169 5.169 10 C -0.077 4.077 11 C -0.046 4.046 12 N -0.603 5.603 13 C 0.527 3.473 14 O -0.581 6.581 15 C -0.158 4.158 16 C 0.003 3.997 17 C 0.026 3.974 18 N -0.477 5.477 19 C 0.012 3.988 20 C -0.269 4.269 21 S 0.224 5.776 22 C -0.060 4.060 23 N -0.312 5.312 24 H 0.276 0.724 25 H 0.192 0.808 26 H 0.424 0.576 27 H 0.168 0.832 28 H 0.135 0.865 29 H 0.195 0.805 30 H 0.215 0.785 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -22.927 0.092 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.166 1.166 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.063 4.937 10 C -0.228 4.228 11 C -0.153 4.153 12 N -0.247 5.247 13 C 0.318 3.682 14 O -0.463 6.463 15 C -0.184 4.184 16 C -0.021 4.021 17 C -0.243 4.243 18 N -0.192 5.192 19 C -0.144 4.144 20 C -0.409 4.409 21 S 0.480 5.520 22 C -0.235 4.235 23 N -0.144 5.144 24 H 0.086 0.914 25 H 0.209 0.791 26 H 0.262 0.738 27 H 0.185 0.815 28 H 0.153 0.847 29 H 0.212 0.788 30 H 0.231 0.769 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.084 -20.843 0.087 22.015 hybrid contribution -0.339 -0.984 -0.002 1.041 sum 6.745 -21.828 0.084 22.846 Atomic orbital electron populations 1.70405 1.08480 1.29081 1.37429 1.26906 0.96468 1.04431 0.94178 0.84585 0.78312 0.74030 0.79222 1.18899 1.20368 1.16580 1.20636 0.93004 0.80839 1.53900 0.83977 1.44861 1.03609 1.04907 1.40362 1.22044 0.98910 0.84065 1.17757 1.17317 0.92802 0.83693 1.21469 1.42261 1.09779 1.02403 1.70307 1.18590 0.83762 0.88161 0.77718 1.90736 1.27451 1.76099 1.52022 1.22765 1.00406 0.90524 1.04751 1.21295 1.00232 0.87441 0.93107 1.26083 0.92415 0.97466 1.08378 1.67007 1.34498 1.03071 1.14644 1.22121 0.96072 0.92696 1.03493 1.27117 0.97995 1.06058 1.09756 1.83615 1.09207 0.96107 1.63093 1.24209 0.99181 0.90967 1.09152 1.78157 0.92126 1.16606 1.27501 0.91441 0.79104 0.73806 0.81501 0.84729 0.78843 0.76857 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.11 11.81 21.66 0.26 -47.86 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 38.55 29.55 68.60 2.03 40.58 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 7 C -0.35 -18.59 10.25 84.01 0.86 -17.73 16 8 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 9 N -0.17 -9.35 3.74 -189.99 -0.71 -10.06 16 10 C -0.08 -3.52 11.49 83.38 0.96 -2.56 16 11 C -0.05 -2.11 6.90 37.76 0.26 -1.85 16 12 N -0.60 -20.01 5.46 -307.87 -1.68 -21.69 16 13 C 0.53 17.92 7.71 86.32 0.67 18.58 16 14 O -0.58 -25.71 13.38 -4.54 -0.06 -25.77 16 15 C -0.16 -3.60 9.57 23.66 0.23 -3.37 16 16 C 0.00 0.06 9.74 23.71 0.23 0.30 16 17 C 0.03 0.55 7.41 86.97 0.64 1.20 16 18 N -0.48 -11.05 10.67 -190.91 -2.04 -13.09 16 19 C 0.01 0.18 11.24 83.91 0.94 1.13 16 20 C -0.27 -2.94 11.08 66.89 0.74 -2.20 16 21 S 0.22 2.83 22.05 -56.49 -1.25 1.58 16 22 C -0.06 -3.30 10.85 85.43 0.93 -2.37 16 23 N -0.31 -19.01 10.39 -56.45 -0.59 -19.59 16 24 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.19 6.65 8.06 -2.91 -0.02 6.63 16 26 H 0.42 9.52 8.80 -92.71 -0.82 8.71 16 27 H 0.17 2.30 7.15 -2.91 -0.02 2.28 16 28 H 0.14 3.90 7.52 -2.91 -0.02 3.88 16 29 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 31 H 0.17 9.31 5.91 -2.91 -0.02 9.29 16 Total: -1.00 -80.32 299.81 3.27 -77.05 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.38 Total: 27.70 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 6.93 Total: -8.85 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -4.76 Total: -112.29 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.25 Total: 1.58 kcal Total: -80.32 3.27 -77.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139350198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.408 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds