Wall clock time and date at job start Tue Mar 31 2020 06:08:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31294 * 1
3 3 Si 1.86801 * 120.00079 * 2 1
4 4 H 1.48501 * 109.46896 * 269.99831 * 3 2 1
5 5 H 1.48499 * 109.47039 * 29.99991 * 3 2 1
6 6 H 1.48502 * 109.46906 * 149.99898 * 3 2 1
7 7 C 1.38990 * 119.99879 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00187 * 180.02562 * 7 2 1
9 9 N 1.37315 * 119.99986 * 359.72326 * 7 2 1
10 10 C 1.36493 * 126.06496 * 180.27908 * 9 7 2
11 11 C 1.35709 * 107.50277 * 180.02562 * 10 9 7
12 12 N 1.40494 * 126.08487 * 179.97438 * 11 10 9
13 13 C 1.34780 * 119.99845 * 180.02562 * 12 11 10
14 14 O 1.21760 * 119.99764 * 359.97438 * 13 12 11
15 15 C 1.46222 * 120.00106 * 179.97438 * 13 12 11
16 16 C 1.35249 * 119.99805 * 179.97438 * 15 13 12
17 17 C 1.46403 * 119.99586 * 179.97438 * 16 15 13
18 18 N 1.30837 * 125.54733 * 179.97438 * 17 16 15
19 19 C 1.30818 * 115.80645 * 180.02562 * 18 17 16
20 20 C 1.34163 * 115.80843 * 0.02562 * 19 18 17
21 21 S 1.71060 * 109.15546 * 359.72618 * 20 19 18
22 22 C 1.40674 * 107.82489 * 359.97438 * 11 10 9
23 23 N 1.30902 * 108.38839 * 359.71474 * 22 11 10
24 24 H 0.97000 * 120.00417 * 0.02562 * 1 2 3
25 25 H 1.07999 * 126.24814 * 359.97438 * 10 9 7
26 26 H 0.96997 * 119.99906 * 359.97438 * 12 11 10
27 27 H 1.08001 * 119.99415 * 0.02562 * 15 13 12
28 28 H 1.07992 * 120.00555 * 0.02562 * 16 15 13
29 29 H 1.08001 * 122.10082 * 180.02562 * 19 18 17
30 30 H 1.07997 * 125.42243 * 180.02562 * 20 19 18
31 31 H 1.08000 * 125.80581 * 179.97438 * 22 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3129 0.0000 0.0000
3 14 2.2470 1.6177 0.0000
4 1 2.4945 2.0463 -1.4001
5 1 1.4444 2.6526 0.7000
6 1 3.5445 1.4401 0.7001
7 6 2.0079 -1.2037 -0.0005
8 1 3.0879 -1.2038 -0.0001
9 7 1.3213 -2.3929 0.0047
10 6 1.8750 -3.6404 0.0102
11 6 0.8576 -4.5385 0.0135
12 7 0.9887 -5.9373 0.0190
13 6 -0.1106 -6.7171 0.0213
14 8 -1.2173 -6.2093 0.0192
15 6 0.0257 -8.1730 0.0264
16 6 -1.0775 -8.9554 0.0293
17 6 -0.9409 -10.4131 0.0339
18 7 -1.9299 -11.2697 0.0374
19 6 -1.5892 -12.5327 0.0417
20 6 -0.2710 -12.7822 0.0424
21 16 0.5809 -11.2989 0.0296
22 6 -0.3515 -3.8195 0.0106
23 7 -0.0715 -2.5408 0.0118
24 1 -0.4851 0.8400 -0.0004
25 1 2.9302 -3.8707 0.0108
26 1 1.8703 -6.3418 0.0203
27 1 1.0073 -8.6233 0.0288
28 1 -2.0590 -8.5051 0.0274
29 1 -2.3231 -13.3251 0.0445
30 1 0.1804 -13.7633 0.0454
31 1 -1.3422 -4.2494 0.0117
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000139350198.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 06:08:20
Heat of formation + Delta-G solvation = 91.353837 kcal
Electronic energy + Delta-G solvation = -18690.554055 eV
Core-core repulsion = 15486.624494 eV
Total energy + Delta-G solvation = -3203.929560 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 290.058 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.70148 -40.61458 -40.19021 -35.99577 -35.02933 -34.91649 -32.24266 -30.93351
-29.65574 -27.37067 -26.41927 -24.06936 -22.80302 -21.42069 -21.09402 -20.95834
-19.32856 -18.80849 -17.99812 -17.40238 -16.99198 -16.49633 -16.10704 -15.83569
-15.52922 -15.27846 -15.01339 -14.89280 -14.49598 -14.33123 -13.46692 -13.31187
-13.25211 -12.90498 -12.83968 -12.42807 -12.07610 -11.88174 -11.56445 -11.00417
-10.88927 -10.83901 -10.76257 -10.50384 -10.08858 -9.40622 -8.49312 -8.45417
-6.22425 -0.95841 0.25907 0.54477 0.74686 1.30851 1.41322 1.59216
1.70858 1.90287 2.04444 2.18711 2.27230 2.68327 2.88670 3.11173
3.25324 3.91359 4.01291 4.23246 4.35503 4.45717 4.46680 4.63136
4.84429 4.99270 5.02952 5.18767 5.22718 5.31817 5.47598 5.97719
6.33031 6.66449 6.75148 6.76063 7.38128 7.48805 7.69872 8.54040
Molecular weight = 290.06amu
Principal moments of inertia in cm(-1)
A = 0.066485 B = 0.002523 C = 0.002433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 421.044407 B =11096.150251 C =11507.345556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.826 5.826
2 C -0.008 4.008
3 Si 1.020 2.980
4 H -0.264 1.264
5 H -0.279 1.279
6 H -0.243 1.243
7 C -0.353 4.353
8 H 0.143 0.857
9 N -0.169 5.169
10 C -0.077 4.077
11 C -0.046 4.046
12 N -0.603 5.603
13 C 0.527 3.473
14 O -0.581 6.581
15 C -0.158 4.158
16 C 0.003 3.997
17 C 0.026 3.974
18 N -0.477 5.477
19 C 0.012 3.988
20 C -0.269 4.269
21 S 0.224 5.776
22 C -0.060 4.060
23 N -0.312 5.312
24 H 0.276 0.724
25 H 0.192 0.808
26 H 0.424 0.576
27 H 0.168 0.832
28 H 0.135 0.865
29 H 0.195 0.805
30 H 0.215 0.785
31 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.993 -22.927 0.092 24.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.454 5.454
2 C -0.220 4.220
3 Si 0.839 3.161
4 H -0.189 1.189
5 H -0.204 1.204
6 H -0.166 1.166
7 C -0.484 4.484
8 H 0.160 0.840
9 N 0.063 4.937
10 C -0.228 4.228
11 C -0.153 4.153
12 N -0.247 5.247
13 C 0.318 3.682
14 O -0.463 6.463
15 C -0.184 4.184
16 C -0.021 4.021
17 C -0.243 4.243
18 N -0.192 5.192
19 C -0.144 4.144
20 C -0.409 4.409
21 S 0.480 5.520
22 C -0.235 4.235
23 N -0.144 5.144
24 H 0.086 0.914
25 H 0.209 0.791
26 H 0.262 0.738
27 H 0.185 0.815
28 H 0.153 0.847
29 H 0.212 0.788
30 H 0.231 0.769
31 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges 7.084 -20.843 0.087 22.015
hybrid contribution -0.339 -0.984 -0.002 1.041
sum 6.745 -21.828 0.084 22.846
Atomic orbital electron populations
1.70405 1.08480 1.29081 1.37429 1.26906 0.96468 1.04431 0.94178
0.84585 0.78312 0.74030 0.79222 1.18899 1.20368 1.16580 1.20636
0.93004 0.80839 1.53900 0.83977 1.44861 1.03609 1.04907 1.40362
1.22044 0.98910 0.84065 1.17757 1.17317 0.92802 0.83693 1.21469
1.42261 1.09779 1.02403 1.70307 1.18590 0.83762 0.88161 0.77718
1.90736 1.27451 1.76099 1.52022 1.22765 1.00406 0.90524 1.04751
1.21295 1.00232 0.87441 0.93107 1.26083 0.92415 0.97466 1.08378
1.67007 1.34498 1.03071 1.14644 1.22121 0.96072 0.92696 1.03493
1.27117 0.97995 1.06058 1.09756 1.83615 1.09207 0.96107 1.63093
1.24209 0.99181 0.90967 1.09152 1.78157 0.92126 1.16606 1.27501
0.91441 0.79104 0.73806 0.81501 0.84729 0.78843 0.76857 0.81594
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -48.11 11.81 21.66 0.26 -47.86 16
2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16
3 Si 1.02 38.55 29.55 68.60 2.03 40.58 16
4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16
5 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16
6 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16
7 C -0.35 -18.59 10.25 84.01 0.86 -17.73 16
8 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16
9 N -0.17 -9.35 3.74 -189.99 -0.71 -10.06 16
10 C -0.08 -3.52 11.49 83.38 0.96 -2.56 16
11 C -0.05 -2.11 6.90 37.76 0.26 -1.85 16
12 N -0.60 -20.01 5.46 -307.87 -1.68 -21.69 16
13 C 0.53 17.92 7.71 86.32 0.67 18.58 16
14 O -0.58 -25.71 13.38 -4.54 -0.06 -25.77 16
15 C -0.16 -3.60 9.57 23.66 0.23 -3.37 16
16 C 0.00 0.06 9.74 23.71 0.23 0.30 16
17 C 0.03 0.55 7.41 86.97 0.64 1.20 16
18 N -0.48 -11.05 10.67 -190.91 -2.04 -13.09 16
19 C 0.01 0.18 11.24 83.91 0.94 1.13 16
20 C -0.27 -2.94 11.08 66.89 0.74 -2.20 16
21 S 0.22 2.83 22.05 -56.49 -1.25 1.58 16
22 C -0.06 -3.30 10.85 85.43 0.93 -2.37 16
23 N -0.31 -19.01 10.39 -56.45 -0.59 -19.59 16
24 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16
25 H 0.19 6.65 8.06 -2.91 -0.02 6.63 16
26 H 0.42 9.52 8.80 -92.71 -0.82 8.71 16
27 H 0.17 2.30 7.15 -2.91 -0.02 2.28 16
28 H 0.14 3.90 7.52 -2.91 -0.02 3.88 16
29 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16
30 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16
31 H 0.17 9.31 5.91 -2.91 -0.02 9.29 16
Total: -1.00 -80.32 299.81 3.27 -77.05
By element:
Atomic # 1 Polarization: 27.32 SS G_CDS: 0.38 Total: 27.70 kcal
Atomic # 6 Polarization: -15.77 SS G_CDS: 6.93 Total: -8.85 kcal
Atomic # 7 Polarization: -107.54 SS G_CDS: -4.76 Total: -112.29 kcal
Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal
Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal
Atomic # 16 Polarization: 2.83 SS G_CDS: -1.25 Total: 1.58 kcal
Total: -80.32 3.27 -77.05 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000139350198.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 168.408 kcal
(2) G-P(sol) polarization free energy of solvation -80.323 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.085 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.354 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds