Wall clock time and date at job start Tue Mar 31 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00444 * 2 1 4 4 H 1.48495 * 109.47384 * 240.00407 * 3 2 1 5 5 H 1.48498 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47065 * 119.99948 * 3 2 1 7 7 C 1.37878 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99910 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.39678 * 120.00056 * 179.97438 * 10 9 7 12 12 C 1.38936 * 120.07577 * 354.22338 * 11 10 9 13 13 C 1.38077 * 119.92560 * 180.29545 * 12 11 10 14 14 C 1.38312 * 120.07481 * 359.45101 * 13 12 11 15 15 C 1.50693 * 119.92442 * 180.27733 * 14 13 12 16 16 F 1.39905 * 109.47161 * 270.27634 * 15 14 13 17 17 F 1.39897 * 109.47531 * 30.27076 * 15 14 13 18 18 F 1.39899 * 109.47401 * 150.27462 * 15 14 13 19 19 C 1.38265 * 120.14646 * 0.55158 * 14 13 12 20 20 C 1.38119 * 120.07663 * 359.72290 * 19 14 13 21 21 N 1.48008 * 120.03985 * 180.02562 * 20 19 14 22 22 O 1.21807 * 119.99440 * 6.10750 * 21 20 19 23 23 O 1.21790 * 120.00345 * 186.10013 * 21 20 19 24 24 H 0.97003 * 119.99557 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47405 * 60.00464 * 9 7 2 26 26 H 1.08997 * 109.47389 * 299.99841 * 9 7 2 27 27 H 0.96998 * 120.00339 * 359.97438 * 10 9 7 28 28 H 1.08007 * 120.03169 * 0.02946 * 12 11 10 29 29 H 1.08004 * 119.95997 * 179.72138 * 13 12 11 30 30 H 1.07997 * 119.95774 * 179.74393 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7372 -4.9296 0.0000 12 6 0.3774 -5.1872 0.1216 13 6 -0.0789 -6.4904 0.1279 14 6 0.8149 -7.5384 0.0020 15 6 0.3125 -8.9591 0.0030 16 9 0.2825 -9.4422 1.3156 17 9 -0.9771 -8.9982 -0.5378 18 9 1.1657 -9.7560 -0.7678 19 6 2.1688 -7.2855 -0.1192 20 6 2.6326 -5.9845 -0.1205 21 7 4.0821 -5.7148 -0.2508 22 8 4.8548 -6.6309 -0.4682 23 8 4.5021 -4.5769 -0.1407 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 3.1566 -3.4356 -0.0009 28 1 -0.3215 -4.3691 0.2153 29 1 -1.1355 -6.6914 0.2269 30 1 2.8644 -8.1063 -0.2131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148726888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:45 Heat of formation + Delta-G solvation = -130.140910 kcal Electronic energy + Delta-G solvation = -22684.173179 eV Core-core repulsion = 18453.736523 eV Total energy + Delta-G solvation = -4230.436656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.066 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.22763 -47.75153 -47.68064 -42.02001 -39.56807 -36.71037 -35.61395 -33.09060 -31.96023 -30.70460 -27.53885 -26.47461 -25.04733 -23.66773 -22.18773 -21.42486 -19.46681 -18.74958 -18.55928 -18.22423 -17.68920 -17.31341 -17.19361 -16.28258 -15.72116 -14.78506 -14.65992 -14.52507 -14.25878 -14.11389 -14.05511 -13.85644 -13.85022 -13.69113 -13.40226 -12.60238 -12.40357 -12.35362 -11.65025 -11.29752 -11.11351 -11.10177 -10.97419 -10.78846 -10.38886 -10.32429 -9.69369 -9.63896 -8.80683 -7.58702 -6.42880 -4.50079 0.11776 0.96826 1.49739 1.63426 2.60514 3.15694 3.20165 3.22311 3.23546 3.55240 3.72517 3.94927 4.19128 4.35210 4.41935 4.68902 4.85597 4.95709 5.02844 5.41599 5.54868 5.80994 5.93304 6.22396 6.56708 6.63073 6.93844 7.22240 7.59757 7.62407 7.84877 8.16284 8.56633 9.18023 10.67326 Molecular weight = 290.07amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.004214 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.917914 B = 6642.798184 C = 7707.867240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.231 3.769 10 N -0.666 5.666 11 C 0.309 3.691 12 C -0.195 4.195 13 C 0.017 3.983 14 C -0.271 4.271 15 C 0.522 3.478 16 F -0.179 7.179 17 F -0.177 7.177 18 F -0.179 7.179 19 C 0.048 3.952 20 C -0.152 4.152 21 N 0.058 4.942 22 O -0.174 6.174 23 O -0.196 6.196 24 H 0.270 0.730 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.419 0.581 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 -14.464 0.361 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.111 3.889 10 N -0.291 5.291 11 C 0.183 3.817 12 C -0.218 4.218 13 C -0.004 4.004 14 C -0.277 4.277 15 C 0.468 3.532 16 F -0.160 7.160 17 F -0.159 7.159 18 F -0.160 7.160 19 C 0.028 3.972 20 C -0.245 4.245 21 N 0.565 4.435 22 O -0.387 6.387 23 O -0.396 6.396 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.268 0.732 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.502 -14.092 0.423 14.319 hybrid contribution 0.971 0.796 -0.038 1.256 sum -1.531 -13.296 0.385 13.389 Atomic orbital electron populations 1.69909 1.06142 1.28013 1.48417 1.24909 0.95001 0.99666 0.94015 0.86362 0.79418 0.81519 0.79130 1.19777 1.20914 1.19776 1.21080 0.93768 0.89657 1.54128 0.91287 1.19624 0.88792 0.82580 0.97951 1.47340 1.14223 1.02089 1.65412 1.18012 0.92370 0.85271 0.86083 1.20853 0.92877 0.97810 1.10219 1.20924 0.99840 0.90892 0.88696 1.19300 0.94205 0.91985 1.22166 1.17961 0.75112 0.86473 0.73650 1.93225 1.96235 1.89758 1.36814 1.93181 1.39681 1.96916 1.86097 1.93188 1.70623 1.76527 1.75701 1.20269 0.94803 0.94821 0.87312 1.20183 0.79478 0.95014 1.29783 1.43286 1.03004 1.00174 0.97023 1.94486 1.53669 1.38112 1.52470 1.94240 1.80815 1.07624 1.56891 0.92063 0.94528 0.94505 0.73244 0.82315 0.83596 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 13.29 55.43 0.74 -22.84 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.55 -13.86 9.28 -34.44 -0.32 -14.18 16 8 H 0.07 1.72 7.60 -52.49 -0.40 1.32 16 9 C 0.23 5.18 4.71 -5.19 -0.02 5.16 16 10 N -0.67 -13.07 5.60 -59.81 -0.34 -13.41 16 11 C 0.31 5.21 6.63 -83.78 -0.56 4.66 16 12 C -0.19 -2.79 9.32 -39.38 -0.37 -3.16 16 13 C 0.02 0.20 9.39 -39.61 -0.37 -0.17 16 14 C -0.27 -3.32 5.45 -104.59 -0.57 -3.89 16 15 C 0.52 5.93 3.36 36.00 0.12 6.05 16 16 F -0.18 -2.09 17.30 2.25 0.04 -2.05 16 17 F -0.18 -1.97 16.46 2.25 0.04 -1.93 16 18 F -0.18 -2.08 16.46 2.25 0.04 -2.04 16 19 C 0.05 0.64 8.90 -39.62 -0.35 0.29 16 20 C -0.15 -2.45 6.86 -79.75 -0.55 -3.00 16 21 N 0.06 1.04 4.45 34.06 0.15 1.19 16 22 O -0.17 -3.03 18.46 -29.46 -0.54 -3.57 16 23 O -0.20 -3.78 15.71 -29.46 -0.46 -4.24 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.04 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.04 0.85 7.73 -51.93 -0.40 0.45 16 27 H 0.42 8.47 4.77 -41.18 -0.20 8.28 16 28 H 0.16 2.26 6.74 -52.48 -0.35 1.91 16 29 H 0.15 1.33 7.61 -52.48 -0.40 0.93 16 30 H 0.15 1.84 7.16 -52.49 -0.38 1.47 16 LS Contribution 285.99 15.07 4.31 4.31 Total: -1.00 -26.00 285.99 -5.82 -31.82 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -1.68 Total: 4.47 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.08 Total: -6.59 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.55 Total: -35.05 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -1.01 Total: -7.81 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.02 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.00 -5.82 -31.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148726888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.322 kcal (2) G-P(sol) polarization free energy of solvation -26.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds