Wall clock time and date at job start Tue Mar 31 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33645 * 122.74834 * 2 1 4 4 S 1.76199 * 107.92359 * 180.02562 * 3 2 1 5 5 C 1.70981 * 90.28287 * 359.97438 * 4 3 2 6 6 C 1.50701 * 124.91545 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47031 * 270.02361 * 6 5 4 8 8 S 1.65608 * 119.99695 * 165.00069 * 7 6 5 9 9 O 1.42102 * 104.27363 * 181.06921 * 8 7 6 10 10 O 1.42097 * 104.27711 * 308.92535 * 8 7 6 11 11 C 1.81401 * 104.44945 * 64.99881 * 8 7 6 12 12 C 1.52998 * 109.46866 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.46802 * 179.97438 * 12 11 8 14 14 H 1.08008 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99722 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47064 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46991 * 119.99857 * 17 15 13 20 20 H 1.48502 * 109.47212 * 239.99901 * 17 15 13 21 21 N 1.29024 * 110.16816 * 0.24478 * 5 4 3 22 22 H 1.08994 * 109.47450 * 90.00382 * 1 2 3 23 23 H 1.09005 * 109.46983 * 210.00266 * 1 2 3 24 24 H 1.08999 * 109.47181 * 330.00166 * 1 2 3 25 25 H 1.07999 * 126.03856 * 0.03544 * 3 2 1 26 26 H 1.09000 * 109.46835 * 150.01834 * 6 5 4 27 27 H 1.09003 * 109.47042 * 30.02774 * 6 5 4 28 28 H 0.96999 * 120.00130 * 344.99832 * 7 6 5 29 29 H 1.08996 * 109.47000 * 300.00248 * 11 8 7 30 30 H 1.09006 * 109.46904 * 59.99979 * 11 8 7 31 31 H 1.08993 * 109.47317 * 300.00064 * 12 11 8 32 32 H 1.08998 * 109.47275 * 60.00757 * 12 11 8 33 33 H 0.96992 * 119.99792 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4835 -2.1270 -0.0010 7 7 4.8001 -2.4978 -1.3825 8 16 6.1104 -3.4588 -1.7023 9 8 6.1170 -3.5824 -3.1179 10 8 7.1834 -2.8278 -1.0170 11 6 5.7064 -5.0480 -0.9265 12 6 6.8539 -6.0336 -1.1556 13 6 6.5185 -7.3537 -0.5105 14 1 5.5805 -7.4773 0.0104 15 6 7.4091 -8.4036 -0.5852 16 7 8.5516 -8.2528 -1.2191 17 14 6.9931 -10.0400 0.2137 18 1 5.6583 -9.9510 0.8583 19 1 6.9725 -11.1050 -0.8210 20 1 8.0176 -10.3652 1.2385 21 7 2.2199 -1.1083 -0.0047 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.8392 2.1308 0.0005 26 1 4.0437 -2.9817 0.5130 27 1 5.3963 -1.8247 0.5124 28 1 4.2422 -2.1806 -2.1098 29 1 5.5597 -4.9029 0.1438 30 1 4.7925 -5.4458 -1.3678 31 1 7.0001 -6.1786 -2.2259 32 1 7.7679 -5.6361 -0.7145 33 1 9.1779 -8.9915 -1.2720 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:13 Heat of formation + Delta-G solvation = -39.819996 kcal Electronic energy + Delta-G solvation = -18201.294563 eV Core-core repulsion = 15094.828079 eV Total energy + Delta-G solvation = -3106.466484 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16674 -36.68131 -35.71230 -35.42549 -33.90140 -32.03661 -31.17269 -28.15316 -27.32396 -25.61260 -22.91718 -21.68668 -20.00354 -19.08376 -18.17077 -17.44296 -16.69030 -16.28193 -15.60162 -15.25466 -15.09529 -14.62740 -14.50415 -14.21528 -13.48472 -13.38823 -13.09350 -12.85507 -12.65315 -12.50879 -11.76439 -11.71440 -11.64698 -11.56538 -11.56256 -11.09396 -10.96936 -10.42932 -10.39645 -10.01382 -9.82560 -9.70068 -9.54864 -9.09980 -9.00462 -8.50769 -6.12792 -4.18206 0.30005 0.76524 1.08700 1.48001 2.43144 3.13648 3.25757 3.33172 3.36722 3.67340 4.19209 4.37526 4.51687 4.65465 4.82140 4.93165 5.06035 5.22620 5.25393 5.27854 5.37357 5.50334 5.60329 5.64123 5.81452 5.94178 6.47362 6.93028 7.29522 7.35235 7.45223 7.80710 8.17008 8.85572 9.46738 10.98290 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.003497 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.709050 B = 8004.305554 C = 8629.633480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.064 3.936 3 C -0.265 4.265 4 S 0.148 5.852 5 C 0.041 3.959 6 C 0.194 3.806 7 N -1.124 6.124 8 S 2.592 3.408 9 O -0.962 6.962 10 O -0.964 6.964 11 C -0.588 4.588 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.457 5.457 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.177 0.823 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.415 0.585 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 18.757 3.662 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.405 4.405 4 S 0.403 5.597 5 C -0.239 4.239 6 C 0.065 3.935 7 N -0.881 5.881 8 S 2.690 3.310 9 O -0.952 6.952 10 O -0.954 6.954 11 C -0.721 4.721 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.173 5.173 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.195 0.805 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.249 0.751 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.033 18.937 3.273 22.674 hybrid contribution -1.814 -1.065 0.441 2.149 sum -13.847 17.872 3.714 22.911 Atomic orbital electron populations 1.20365 0.86962 1.03417 1.03065 1.20358 0.98401 0.86433 1.01646 1.26943 0.95607 1.04082 1.13824 1.84217 1.06539 1.02450 1.66503 1.26921 0.93999 0.98437 1.04504 1.19764 0.95867 0.93557 0.84339 1.55919 1.50518 1.69027 1.12650 1.05670 0.73175 0.77147 0.75032 1.93566 1.85604 1.87111 1.28948 1.93544 1.51833 1.73871 1.76149 1.30441 1.11476 1.17938 1.12286 1.18983 0.90128 0.93210 0.98889 1.21047 1.04118 0.95460 1.35297 0.91926 1.25073 0.94929 0.99229 0.95292 1.69963 1.08644 1.32401 1.41840 0.86411 0.78484 0.83249 0.79123 1.19619 1.20815 1.20801 1.66144 1.04374 1.31745 1.15011 0.90566 0.90408 0.90743 0.80534 0.88370 0.87886 0.75132 0.86141 0.85838 0.94771 0.94721 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 36.00 0.37 -0.18 16 2 C 0.06 0.64 6.74 -84.22 -0.57 0.07 16 3 C -0.27 -2.24 11.13 29.12 0.32 -1.92 16 4 S 0.15 1.41 23.18 -107.50 -2.49 -1.08 16 5 C 0.04 0.46 6.78 -13.46 -0.09 0.37 16 6 C 0.19 2.24 6.71 -5.20 -0.03 2.20 16 7 N -1.12 -14.63 5.88 -11.66 -0.07 -14.70 16 8 S 2.59 44.79 5.46 -107.50 -0.59 44.20 16 9 O -0.96 -19.63 18.08 -57.54 -1.04 -20.67 16 10 O -0.96 -19.05 17.50 -57.54 -1.01 -20.06 16 11 C -0.59 -10.89 6.01 37.16 0.22 -10.66 16 12 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 13 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 14 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 N -0.46 -5.50 10.53 -8.05 -0.08 -5.58 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 25 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.10 7.69 -51.93 -0.40 0.70 16 28 H 0.42 4.92 8.61 -34.48 -0.30 4.63 16 29 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 30 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 317.52 15.07 4.78 4.78 Total: -1.00 -35.22 317.52 -9.14 -44.36 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.04 Total: 0.86 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.33 Total: -22.62 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.58 Total: -45.88 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -2.05 Total: -40.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 46.20 SS G_CDS: -3.08 Total: 43.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.22 -9.14 -44.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.541 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds