Wall clock time and date at job start Tue Mar 31 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33645 * 122.74834 * 2 1 4 4 S 1.76199 * 107.92359 * 180.02562 * 3 2 1 5 5 C 1.70981 * 90.28287 * 359.97438 * 4 3 2 6 6 C 1.50701 * 124.91545 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47031 * 270.02361 * 6 5 4 8 8 S 1.65608 * 119.99695 * 165.00069 * 7 6 5 9 9 O 1.42102 * 104.27363 * 181.06921 * 8 7 6 10 10 O 1.42097 * 104.27711 * 308.92535 * 8 7 6 11 11 C 1.81401 * 104.44945 * 64.99881 * 8 7 6 12 12 C 1.52998 * 109.46866 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.46802 * 179.97438 * 12 11 8 14 14 H 1.08008 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99722 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47064 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46991 * 119.99857 * 17 15 13 20 20 H 1.48502 * 109.47212 * 239.99901 * 17 15 13 21 21 N 1.29024 * 110.16816 * 0.24478 * 5 4 3 22 22 H 1.08994 * 109.47450 * 90.00382 * 1 2 3 23 23 H 1.09005 * 109.46983 * 210.00266 * 1 2 3 24 24 H 1.08999 * 109.47181 * 330.00166 * 1 2 3 25 25 H 1.07999 * 126.03856 * 0.03544 * 3 2 1 26 26 H 1.09000 * 109.46835 * 150.01834 * 6 5 4 27 27 H 1.09003 * 109.47042 * 30.02774 * 6 5 4 28 28 H 0.96999 * 120.00130 * 344.99832 * 7 6 5 29 29 H 1.08996 * 109.47000 * 300.00248 * 11 8 7 30 30 H 1.09006 * 109.46904 * 59.99979 * 11 8 7 31 31 H 1.08993 * 109.47317 * 300.00064 * 12 11 8 32 32 H 1.08998 * 109.47275 * 60.00757 * 12 11 8 33 33 H 0.96992 * 119.99792 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4835 -2.1270 -0.0010 7 7 4.8001 -2.4978 -1.3825 8 16 6.1104 -3.4588 -1.7023 9 8 6.1170 -3.5824 -3.1179 10 8 7.1834 -2.8278 -1.0170 11 6 5.7064 -5.0480 -0.9265 12 6 6.8539 -6.0336 -1.1556 13 6 6.5185 -7.3537 -0.5105 14 1 5.5805 -7.4773 0.0104 15 6 7.4091 -8.4036 -0.5852 16 7 8.5516 -8.2528 -1.2191 17 14 6.9931 -10.0400 0.2137 18 1 5.6583 -9.9510 0.8583 19 1 6.9725 -11.1050 -0.8210 20 1 8.0176 -10.3652 1.2385 21 7 2.2199 -1.1083 -0.0047 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.8392 2.1308 0.0005 26 1 4.0437 -2.9817 0.5130 27 1 5.3963 -1.8247 0.5124 28 1 4.2422 -2.1806 -2.1098 29 1 5.5597 -4.9029 0.1438 30 1 4.7925 -5.4458 -1.3678 31 1 7.0001 -6.1786 -2.2259 32 1 7.7679 -5.6361 -0.7145 33 1 9.1779 -8.9915 -1.2720 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170887566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:13 Heat of formation + Delta-G solvation = -67.272254 kcal Electronic energy + Delta-G solvation = -18202.484982 eV Core-core repulsion = 15094.828079 eV Total energy + Delta-G solvation = -3107.656904 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91253 -38.20525 -37.07500 -36.61694 -35.87671 -33.11039 -32.78627 -28.82271 -28.16429 -27.57876 -23.74597 -23.55919 -20.74633 -20.41404 -19.25295 -18.86213 -18.17499 -17.56374 -17.06606 -16.52653 -16.33523 -16.07476 -15.56126 -15.06675 -15.01091 -14.47053 -14.26961 -13.89229 -13.69466 -13.45781 -13.26989 -13.21690 -13.12059 -12.97805 -12.93838 -12.76663 -12.23174 -12.22092 -12.10568 -11.73032 -11.21849 -10.79115 -10.63783 -10.46740 -10.42972 -9.74620 -8.24733 -6.38104 -0.79390 -0.32331 0.35690 0.76237 1.42411 1.42667 1.56023 1.59299 1.96229 2.39323 2.76812 2.91271 3.09099 3.27941 3.70965 4.01747 4.13516 4.23827 4.29848 4.31795 4.44569 4.62032 4.79280 4.80101 4.84387 4.97850 5.30120 5.31433 5.35811 5.70693 5.90486 6.08410 6.71118 6.76007 7.32010 8.87697 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.003497 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.709050 B = 8004.305554 C = 8629.633480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.040 3.960 3 C -0.249 4.249 4 S 0.158 5.842 5 C 0.018 3.982 6 C 0.185 3.815 7 N -1.107 6.107 8 S 2.625 3.375 9 O -0.995 6.995 10 O -0.989 6.989 11 C -0.587 4.587 12 C 0.018 3.982 13 C -0.537 4.537 14 H 0.076 0.924 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.256 1.256 19 H -0.280 1.280 20 H -0.278 1.278 21 N -0.477 5.477 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.208 0.792 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.423 0.577 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.007 0.993 32 H 0.011 0.989 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 19.634 4.800 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.389 4.389 4 S 0.412 5.588 5 C -0.261 4.261 6 C 0.056 3.944 7 N -0.868 5.868 8 S 2.722 3.278 9 O -0.985 6.985 10 O -0.979 6.979 11 C -0.720 4.720 12 C -0.020 4.020 13 C -0.576 4.576 14 H 0.094 0.906 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.180 1.180 19 H -0.205 1.205 20 H -0.203 1.203 21 N -0.194 5.194 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.225 0.775 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.259 0.741 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.153 19.811 4.414 24.744 hybrid contribution -1.218 -1.192 0.094 1.707 sum -15.370 18.619 4.509 24.561 Atomic orbital electron populations 1.20445 0.85174 1.04241 1.03694 1.20826 0.99704 0.86327 1.02333 1.27339 0.94685 1.05199 1.11630 1.84181 1.07476 1.01234 1.65922 1.26793 0.93956 0.99123 1.06204 1.19998 0.96661 0.94705 0.83033 1.55419 1.49535 1.67787 1.14052 1.04420 0.73203 0.76567 0.73628 1.93516 1.86396 1.87560 1.31050 1.93508 1.53680 1.74211 1.76462 1.30341 1.09549 1.17449 1.14635 1.18846 0.91836 0.94556 0.96812 1.21562 1.04541 0.96462 1.35074 0.90601 1.26099 0.94747 1.03511 0.95883 1.70103 1.09953 1.33773 1.43537 0.85278 0.78871 0.78088 0.78088 1.17981 1.20528 1.20349 1.66144 1.04806 1.33239 1.15232 0.89984 0.91142 0.88398 0.77488 0.86952 0.87194 0.74121 0.83465 0.83934 0.97488 0.97056 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.31 71.24 0.73 -0.15 16 2 C 0.04 0.71 6.74 41.52 0.28 0.99 16 3 C -0.25 -3.53 11.13 66.78 0.74 -2.79 16 4 S 0.16 2.71 23.18 -56.49 -1.31 1.40 16 5 C 0.02 0.38 6.78 88.52 0.60 0.98 16 6 C 0.18 3.98 6.71 85.63 0.57 4.56 16 7 N -1.11 -27.53 5.88 -190.80 -1.12 -28.65 16 8 S 2.63 90.15 5.46 -56.49 -0.31 89.85 16 9 O -0.99 -40.95 18.08 -127.65 -2.31 -43.25 16 10 O -0.99 -39.10 17.50 -127.65 -2.23 -41.33 16 11 C -0.59 -21.40 6.01 71.98 0.43 -20.97 16 12 C 0.02 0.95 4.98 29.85 0.15 1.10 16 13 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 14 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 15 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 16 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 17 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 N -0.48 -10.74 10.53 -179.40 -1.89 -12.63 16 22 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.10 0.64 8.12 -2.39 -0.02 0.62 16 25 H 0.21 1.50 8.06 -2.91 -0.02 1.47 16 26 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.11 2.20 7.69 -2.39 -0.02 2.19 16 28 H 0.42 9.52 8.61 -96.74 -0.83 8.69 16 29 H 0.15 4.51 8.14 -2.39 -0.02 4.49 16 30 H 0.14 4.62 8.14 -2.39 -0.02 4.60 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -76.44 317.52 -2.35 -78.79 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.30 Total: 12.20 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 4.21 Total: -45.32 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -2.73 Total: -97.54 kcal Atomic # 8 Polarization: -80.04 SS G_CDS: -4.54 Total: -84.58 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 92.87 SS G_CDS: -1.62 Total: 91.25 kcal Total: -76.44 -2.35 -78.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.521 kcal (2) G-P(sol) polarization free energy of solvation -76.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds