Wall clock time and date at job start Tue Mar 31 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00317 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99527 * 3 2 1 5 5 H 1.48499 * 109.46882 * 29.99345 * 3 2 1 6 6 H 1.48498 * 109.47267 * 149.99581 * 3 2 1 7 7 C 1.37877 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00363 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99807 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47053 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99923 * 179.97438 * 12 11 10 14 14 O 1.21711 * 120.00213 * 0.02562 * 13 12 11 15 15 C 1.46547 * 119.99880 * 180.02562 * 13 12 11 16 16 C 1.37965 * 126.21913 * 180.33166 * 15 13 12 17 17 C 1.39794 * 107.12632 * 180.10979 * 16 15 13 18 18 Cl 1.73599 * 126.06513 * 179.87892 * 17 16 15 19 19 C 1.35725 * 107.87482 * 359.61273 * 17 16 15 20 20 Cl 1.73601 * 125.58661 * 180.26342 * 19 17 16 21 21 N 1.35669 * 108.83080 * 0.24024 * 19 17 16 22 22 H 0.97001 * 125.69464 * 179.97438 * 21 19 17 23 23 H 0.97009 * 119.99619 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47209 * 60.00238 * 9 7 2 25 25 H 1.08997 * 109.46832 * 299.99483 * 9 7 2 26 26 H 1.09003 * 109.47241 * 59.99638 * 10 9 7 27 27 H 1.09003 * 109.47046 * 299.99784 * 10 9 7 28 28 H 1.09003 * 109.47191 * 59.99854 * 11 10 9 29 29 H 1.09003 * 109.47220 * 299.99924 * 11 10 9 30 30 H 0.97000 * 120.00330 * 0.02562 * 12 11 10 31 31 H 1.07992 * 126.44267 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 7 6.0397 -4.0179 0.0014 13 6 7.3647 -4.2642 0.0010 14 8 8.1557 -3.3392 0.0006 15 6 7.8532 -5.6459 0.0009 16 6 9.1742 -6.0436 0.0069 17 6 9.1834 -7.4415 0.0018 18 17 10.5934 -8.4542 0.0030 19 6 7.8945 -7.8665 0.0017 20 17 7.3772 -9.5237 0.0027 21 7 7.0764 -6.7842 0.0012 22 1 6.1067 -6.8077 0.0006 23 1 -0.4850 0.8402 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6806 -0.8889 26 1 3.6584 -3.1503 -0.8892 27 1 3.6578 -3.1507 0.8908 28 1 5.9148 -2.1229 0.8910 29 1 5.9148 -2.1228 -0.8890 30 1 5.4093 -4.7552 0.0014 31 1 10.0389 -5.3966 0.0121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171593769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:06 Heat of formation + Delta-G solvation = -19.898420 kcal Electronic energy + Delta-G solvation = -17394.916191 eV Core-core repulsion = 14149.393064 eV Total energy + Delta-G solvation = -3245.523127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89177 -39.31622 -37.25986 -36.81991 -35.76261 -33.51080 -31.85275 -31.40193 -29.67871 -27.23532 -23.86973 -22.39040 -21.18929 -20.89863 -20.52526 -19.13453 -16.92580 -16.55777 -15.98886 -15.80986 -15.19698 -15.13230 -14.35342 -14.20798 -14.02556 -13.77215 -13.59569 -12.77390 -12.32955 -12.31851 -12.07981 -12.01499 -11.86052 -11.27760 -11.20577 -10.97428 -10.53014 -10.12706 -9.92260 -9.76344 -9.46104 -9.30968 -9.18319 -8.64825 -8.61802 -6.12590 -4.12035 0.81390 1.01011 1.71524 1.81484 2.71395 3.04781 3.05051 3.26770 3.34842 3.38121 4.38607 4.38778 4.49817 4.95928 5.21388 5.21463 5.36990 5.50475 5.76779 5.85807 5.98271 6.08956 6.30318 6.44213 6.52589 6.65491 7.12712 7.26438 7.30560 7.68537 7.95372 8.42737 8.90411 9.49343 11.00534 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.034506 B = 0.002663 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.267535 B =10511.151821 C =11296.669380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.722 5.722 13 C 0.585 3.415 14 O -0.520 6.520 15 C -0.011 4.011 16 C -0.089 4.089 17 C -0.099 4.099 18 Cl -0.028 7.028 19 C 0.097 3.903 20 Cl 0.004 6.996 21 N -0.522 5.522 22 H 0.429 0.571 23 H 0.264 0.736 24 H 0.020 0.980 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.394 0.606 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.730 -18.902 0.035 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.008 4.008 12 N -0.372 5.372 13 C 0.370 3.630 14 O -0.396 6.396 15 C -0.126 4.126 16 C -0.115 4.115 17 C -0.134 4.134 18 Cl 0.000 7.000 19 C -0.047 4.047 20 Cl 0.033 6.967 21 N -0.123 5.123 22 H 0.269 0.731 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.227 0.773 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 18.029 -18.268 0.040 25.666 hybrid contribution -0.535 0.137 -0.024 0.552 sum 17.494 -18.131 0.015 25.195 Atomic orbital electron populations 1.69911 1.06344 1.27049 1.50761 1.25031 0.94757 0.99286 0.94373 0.86771 0.80398 0.83474 0.78634 1.20199 1.21324 1.18861 1.21070 0.89236 0.94516 1.51419 0.91048 1.19500 0.97346 0.91228 0.96790 1.21730 0.90343 1.01377 1.01770 1.21771 0.96366 0.80159 1.02544 1.46078 1.05965 1.10559 1.74602 1.16832 0.82870 0.85821 0.77459 1.90891 1.55286 1.43427 1.49981 1.20599 0.90690 0.85950 1.15314 1.21163 0.95777 0.91963 1.02610 1.19614 0.86548 0.91845 1.15365 1.98353 1.37079 1.67111 1.97443 1.20588 0.89161 0.82800 1.12198 1.98435 1.90999 1.10157 1.97117 1.41926 1.09464 1.04085 1.56815 0.73109 0.92624 0.96197 0.96640 0.92064 0.92033 0.91178 0.91177 0.77263 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16 8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -1.96 5.27 -26.73 -0.14 -2.10 16 11 C 0.11 1.69 5.67 -4.05 -0.02 1.67 16 12 N -0.72 -8.61 5.55 -61.66 -0.34 -8.95 16 13 C 0.58 7.62 7.78 -12.91 -0.10 7.52 16 14 O -0.52 -8.68 16.88 5.18 0.09 -8.59 16 15 C -0.01 -0.12 7.06 -81.93 -0.58 -0.70 16 16 C -0.09 -0.92 10.64 -39.10 -0.42 -1.34 16 17 C -0.10 -0.96 6.66 -39.90 -0.27 -1.23 16 18 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 19 C 0.10 0.85 7.75 -16.75 -0.13 0.72 16 20 Cl 0.00 0.03 29.13 -51.86 -1.51 -1.48 16 21 N -0.52 -4.17 6.01 -6.51 -0.04 -4.21 16 22 H 0.43 2.28 8.19 -40.82 -0.33 1.95 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 25 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.39 3.51 7.60 -40.82 -0.31 3.20 16 31 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -31.70 306.35 -7.90 -39.60 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -3.11 Total: -0.68 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.20 Total: -8.65 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.39 Total: -39.60 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -3.02 Total: -3.24 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.70 -7.90 -39.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.703 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds