Wall clock time and date at job start Tue Mar 31 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00317 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99527 * 3 2 1 5 5 H 1.48499 * 109.46882 * 29.99345 * 3 2 1 6 6 H 1.48498 * 109.47267 * 149.99581 * 3 2 1 7 7 C 1.37877 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00363 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99807 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47053 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99923 * 179.97438 * 12 11 10 14 14 O 1.21711 * 120.00213 * 0.02562 * 13 12 11 15 15 C 1.46547 * 119.99880 * 180.02562 * 13 12 11 16 16 C 1.37965 * 126.21913 * 180.33166 * 15 13 12 17 17 C 1.39794 * 107.12632 * 180.10979 * 16 15 13 18 18 Cl 1.73599 * 126.06513 * 179.87892 * 17 16 15 19 19 C 1.35725 * 107.87482 * 359.61273 * 17 16 15 20 20 Cl 1.73601 * 125.58661 * 180.26342 * 19 17 16 21 21 N 1.35669 * 108.83080 * 0.24024 * 19 17 16 22 22 H 0.97001 * 125.69464 * 179.97438 * 21 19 17 23 23 H 0.97009 * 119.99619 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47209 * 60.00238 * 9 7 2 25 25 H 1.08997 * 109.46832 * 299.99483 * 9 7 2 26 26 H 1.09003 * 109.47241 * 59.99638 * 10 9 7 27 27 H 1.09003 * 109.47046 * 299.99784 * 10 9 7 28 28 H 1.09003 * 109.47191 * 59.99854 * 11 10 9 29 29 H 1.09003 * 109.47220 * 299.99924 * 11 10 9 30 30 H 0.97000 * 120.00330 * 0.02562 * 12 11 10 31 31 H 1.07992 * 126.44267 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 7 6.0397 -4.0179 0.0014 13 6 7.3647 -4.2642 0.0010 14 8 8.1557 -3.3392 0.0006 15 6 7.8532 -5.6459 0.0009 16 6 9.1742 -6.0436 0.0069 17 6 9.1834 -7.4415 0.0018 18 17 10.5934 -8.4542 0.0030 19 6 7.8945 -7.8665 0.0017 20 17 7.3772 -9.5237 0.0027 21 7 7.0764 -6.7842 0.0012 22 1 6.1067 -6.8077 0.0006 23 1 -0.4850 0.8402 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6806 -0.8889 26 1 3.6584 -3.1503 -0.8892 27 1 3.6578 -3.1507 0.8908 28 1 5.9148 -2.1229 0.8910 29 1 5.9148 -2.1228 -0.8890 30 1 5.4093 -4.7552 0.0014 31 1 10.0389 -5.3966 0.0121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171593769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:06 Heat of formation + Delta-G solvation = -41.242776 kcal Electronic energy + Delta-G solvation = -17395.841752 eV Core-core repulsion = 14149.393064 eV Total energy + Delta-G solvation = -3246.448688 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.66775 -40.36168 -37.93064 -37.53058 -37.08266 -35.23209 -33.45428 -32.29579 -30.67429 -28.76271 -25.24375 -23.54355 -22.29054 -21.97162 -21.51010 -20.15994 -18.92451 -17.48651 -16.98765 -16.97463 -16.23047 -16.20472 -15.84537 -15.25350 -15.18633 -14.80678 -14.63860 -14.43115 -13.82357 -13.67703 -13.01244 -12.90132 -12.75662 -12.70336 -12.50504 -12.03117 -11.95942 -11.80459 -11.60539 -11.34939 -11.27882 -10.75978 -10.32287 -10.16175 -9.41180 -8.29325 -6.33258 -0.00293 0.30327 1.00792 1.03458 1.37860 1.39797 1.50981 1.86453 2.09161 2.19758 2.36704 3.06985 3.60553 3.70795 4.04243 4.19547 4.20653 4.44501 4.48359 4.86139 4.88153 4.98580 5.04003 5.18467 5.26944 5.47356 5.55859 5.65285 5.84800 6.26992 6.36130 6.75316 6.96833 7.31917 8.87009 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.034506 B = 0.002663 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.267535 B =10511.151821 C =11296.669380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.102 4.102 11 C 0.126 3.874 12 N -0.711 5.711 13 C 0.590 3.410 14 O -0.560 6.560 15 C -0.021 4.021 16 C -0.091 4.091 17 C -0.111 4.111 18 Cl -0.024 7.024 19 C 0.106 3.894 20 Cl 0.019 6.981 21 N -0.507 5.507 22 H 0.442 0.558 23 H 0.266 0.734 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.410 0.590 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.120 -19.563 0.025 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.362 5.362 13 C 0.377 3.623 14 O -0.439 6.439 15 C -0.135 4.135 16 C -0.118 4.118 17 C -0.146 4.146 18 Cl 0.004 6.996 19 C -0.039 4.039 20 Cl 0.048 6.952 21 N -0.109 5.109 22 H 0.284 0.716 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.246 0.754 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 19.397 -18.972 0.029 27.133 hybrid contribution -1.008 0.181 -0.022 1.024 sum 18.389 -18.791 0.007 26.292 Atomic orbital electron populations 1.70062 1.08278 1.28114 1.52760 1.25991 0.95567 1.03482 0.94268 0.85706 0.79600 0.78493 0.79166 1.19297 1.21289 1.16858 1.21474 0.91985 0.93198 1.50160 0.94392 1.19473 0.93967 0.94696 0.96978 1.21499 0.91883 0.98244 1.02329 1.21421 0.94453 0.81630 1.02207 1.45830 1.06173 1.10037 1.74166 1.16995 0.82527 0.86337 0.76441 1.90872 1.56234 1.44867 1.51934 1.20107 0.90974 0.85355 1.17089 1.21284 0.95921 0.92464 1.02109 1.19676 0.87160 0.91720 1.16054 1.98354 1.36908 1.66833 1.97459 1.20675 0.89065 0.83477 1.10731 1.98449 1.90829 1.08967 1.96965 1.41829 1.10058 1.03165 1.55871 0.71552 0.92557 0.95938 0.96064 0.91545 0.91554 0.91653 0.91578 0.75360 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.95 43.23 27.47 68.60 1.88 45.12 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 7 C -0.53 -29.07 9.66 25.60 0.25 -28.82 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.32 5.27 30.59 0.16 -3.16 16 11 C 0.13 3.52 5.67 86.38 0.49 4.01 16 12 N -0.71 -15.57 5.55 -467.21 -2.59 -18.16 16 13 C 0.59 14.52 7.78 86.41 0.67 15.19 16 14 O -0.56 -18.26 16.88 -4.38 -0.07 -18.34 16 15 C -0.02 -0.41 7.06 40.31 0.28 -0.12 16 16 C -0.09 -1.78 10.64 22.58 0.24 -1.54 16 17 C -0.11 -1.98 6.66 22.06 0.15 -1.83 16 18 Cl -0.02 -0.40 29.12 -2.72 -0.08 -0.48 16 19 C 0.11 1.64 7.75 83.52 0.65 2.28 16 20 Cl 0.02 0.25 29.13 -2.72 -0.08 0.17 16 21 N -0.51 -6.98 6.01 -174.50 -1.05 -8.03 16 22 H 0.44 3.53 8.19 -92.71 -0.76 2.77 16 23 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 24 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 25 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.41 6.30 7.60 -92.71 -0.70 5.59 16 31 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -68.12 306.35 1.45 -66.67 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -0.33 Total: 4.97 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 3.47 Total: -13.75 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -3.34 Total: -84.36 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.07 Total: -18.34 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.12 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.31 kcal Total: -68.12 1.45 -66.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.424 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds