Wall clock time and date at job start Tue Mar 31 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99990 * 2 1 4 4 O 1.20828 * 120.00182 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00080 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47224 * 179.97438 * 5 3 2 7 7 C 1.36932 * 120.00457 * 96.09416 * 6 5 3 8 8 H 1.07999 * 120.00454 * 163.11911 * 7 6 5 9 9 C 1.38816 * 119.99565 * 342.83728 * 7 6 5 10 10 N 1.31613 * 120.00378 * 336.49835 * 9 7 6 11 11 Si 1.86805 * 119.99843 * 156.49315 * 9 7 6 12 12 H 1.48500 * 109.46721 * 90.00219 * 11 9 7 13 13 H 1.48492 * 109.47086 * 210.00354 * 11 9 7 14 14 H 1.48500 * 109.47137 * 330.00461 * 11 9 7 15 15 C 1.46505 * 119.99760 * 276.08728 * 6 5 3 16 16 C 1.50700 * 109.47375 * 270.00201 * 15 6 5 17 17 C 1.33567 * 126.02204 * 90.00161 * 16 15 6 18 18 N 1.31862 * 114.51406 * 180.02562 * 17 16 15 19 19 C 1.29136 * 117.07733 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 124.92543 * 180.02562 * 19 18 17 21 21 S 1.70980 * 110.15394 * 359.72652 * 19 18 17 22 22 H 1.09000 * 109.46891 * 60.00532 * 1 2 3 23 23 H 1.08997 * 109.46659 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47022 * 300.00185 * 1 2 3 25 25 H 1.09002 * 109.47497 * 59.99189 * 5 3 2 26 26 H 1.09006 * 109.47191 * 299.99108 * 5 3 2 27 27 H 0.96999 * 120.00616 * 179.97438 * 10 9 7 28 28 H 1.09000 * 109.46571 * 30.00119 * 15 6 5 29 29 H 1.09000 * 109.47195 * 150.00095 * 15 6 5 30 30 H 1.08002 * 122.73972 * 359.96071 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2970 3.3010 1.1778 8 1 4.8543 4.2260 1.1685 9 6 3.8952 2.7448 2.3845 10 7 2.8641 1.9276 2.4216 11 14 4.8180 3.1560 3.9557 12 1 4.2082 4.3528 4.5890 13 1 4.7387 2.0060 4.8918 14 1 6.2407 3.4363 3.6353 15 6 4.0599 3.4200 -1.2629 16 6 5.4414 3.2732 -1.8468 17 6 5.8411 2.3156 -2.6878 18 7 7.1038 2.4040 -3.0572 19 6 7.7905 3.3848 -2.5735 20 17 9.4627 3.6945 -2.9221 21 16 6.8119 4.3390 -1.5463 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9558 0.7808 -0.8907 26 1 3.9564 0.7807 0.8893 27 1 2.5836 1.5387 3.2647 28 1 3.3253 3.0225 -1.9633 29 1 3.8533 4.4743 -1.0791 30 1 5.1840 1.5324 -3.0359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175449381.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:52 Heat of formation + Delta-G solvation = -31.326502 kcal Electronic energy + Delta-G solvation = -18791.380672 eV Core-core repulsion = 15547.405692 eV Total energy + Delta-G solvation = -3243.974980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87859 -40.56873 -38.05627 -37.73061 -36.49140 -33.89536 -31.69385 -29.80463 -27.81220 -27.58453 -25.63594 -23.64452 -21.61534 -21.17506 -19.30877 -18.84612 -18.11876 -17.36125 -16.98121 -16.68426 -16.59261 -15.94207 -15.42261 -15.27918 -15.16630 -14.69506 -13.95980 -13.90694 -13.49005 -13.06359 -12.88931 -12.72252 -12.67951 -12.48058 -12.42258 -12.11549 -12.01740 -11.91515 -11.38351 -11.16941 -10.76911 -10.56075 -10.26443 -9.75055 -9.07784 -7.99226 -5.33296 -0.39954 -0.17214 0.72379 0.94352 1.46877 1.51422 1.59322 1.73623 1.96965 2.32335 2.53743 3.22510 3.54739 3.69783 4.10132 4.24356 4.39816 4.46603 4.51980 4.67520 4.76589 4.86291 5.00776 5.08650 5.09375 5.61754 5.93092 6.15657 6.52086 6.96225 7.46153 7.71808 8.09047 9.09256 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.016736 B = 0.005644 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.668862 B = 4959.875430 C = 6199.561983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.467 3.533 4 O -0.539 6.539 5 C 0.188 3.812 6 N -0.568 5.568 7 C -0.265 4.265 8 H 0.083 0.917 9 C -0.038 4.038 10 N -0.921 5.921 11 Si 0.959 3.041 12 H -0.292 1.292 13 H -0.294 1.294 14 H -0.267 1.267 15 C 0.217 3.783 16 C -0.204 4.204 17 C 0.033 3.967 18 N -0.479 5.479 19 C 0.039 3.961 20 Cl 0.026 6.974 21 S 0.216 5.784 22 H 0.055 0.945 23 H 0.125 0.875 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.250 0.750 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 0.076 -9.030 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.303 6.303 3 C 0.309 3.691 4 O -0.427 6.427 5 C 0.059 3.941 6 N -0.286 5.286 7 C -0.394 4.394 8 H 0.100 0.900 9 C -0.235 4.235 10 N -0.566 5.566 11 Si 0.788 3.212 12 H -0.219 1.219 13 H -0.221 1.221 14 H -0.191 1.191 15 C 0.088 3.912 16 C -0.329 4.329 17 C -0.118 4.118 18 N -0.197 5.197 19 C -0.263 4.263 20 Cl 0.053 6.947 21 S 0.465 5.535 22 H 0.074 0.926 23 H 0.143 0.857 24 H 0.054 0.946 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.743 0.869 -8.707 10.467 hybrid contribution -0.511 -0.461 0.900 1.133 sum 5.232 0.408 -7.807 9.407 Atomic orbital electron populations 1.23176 0.77312 1.04197 1.00875 1.86495 1.23357 1.35281 1.85145 1.25571 0.93902 0.80281 0.69383 1.90451 1.67529 1.37643 1.47051 1.20267 0.85074 0.86446 1.02320 1.44052 1.74627 1.07531 1.02403 1.19449 1.28308 1.08056 0.83599 0.89969 1.25451 0.96981 1.00621 1.00407 1.70034 1.24131 1.36529 1.25920 0.85409 0.79369 0.76593 0.79862 1.21919 1.22066 1.19150 1.19258 0.87422 0.97331 0.87199 1.27453 1.02883 0.99822 1.02715 1.21686 0.90180 1.00815 0.99087 1.65981 1.07190 1.21013 1.25480 1.27143 0.95001 0.99967 1.04175 1.98394 1.08450 1.93795 1.94029 1.84088 1.00655 1.27215 1.41532 0.92626 0.85700 0.94644 0.89214 0.89184 0.94032 0.90159 0.91622 0.78666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.56 113.37 1.20 2.44 16 2 O -0.39 -15.57 10.57 -51.38 -0.54 -16.11 16 3 C 0.47 21.32 6.17 71.24 0.44 21.76 16 4 O -0.54 -28.03 15.80 21.96 0.35 -27.69 16 5 C 0.19 8.08 5.49 85.63 0.47 8.55 16 6 N -0.57 -25.08 2.01 -710.68 -1.43 -26.51 16 7 C -0.26 -13.10 9.64 84.04 0.81 -12.29 16 8 H 0.08 3.94 7.93 -2.91 -0.02 3.92 16 9 C -0.04 -1.99 4.81 84.86 0.41 -1.58 16 10 N -0.92 -50.54 9.38 21.65 0.20 -50.34 16 11 Si 0.96 42.58 29.62 68.60 2.03 44.61 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 15 C 0.22 7.81 6.16 85.63 0.53 8.34 16 16 C -0.20 -6.46 6.18 24.63 0.15 -6.31 16 17 C 0.03 0.98 11.25 83.63 0.94 1.92 16 18 N -0.48 -15.06 10.55 -194.44 -2.05 -17.11 16 19 C 0.04 1.14 8.03 130.64 1.05 2.19 16 20 Cl 0.03 0.63 29.33 -2.72 -0.08 0.55 16 21 S 0.22 6.26 23.22 -56.49 -1.31 4.95 16 22 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 23 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 24 H 0.03 1.27 8.13 -2.38 -0.02 1.25 16 25 H 0.09 3.15 8.12 -2.39 -0.02 3.13 16 26 H 0.09 4.31 6.46 -2.38 -0.02 4.29 16 27 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 29 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 30 H 0.20 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -62.51 299.48 4.33 -58.18 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.17 Total: 4.45 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 5.99 Total: 25.02 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.28 Total: -93.96 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.20 Total: -43.80 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.31 Total: 4.95 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -0.08 Total: 0.55 kcal Total: -62.51 4.33 -58.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175449381.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.854 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds