Wall clock time and date at job start Tue Mar 31 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36696 * 120.00268 * 2 1 4 4 H 1.07995 * 119.99890 * 146.02439 * 3 2 1 5 5 C 1.39166 * 119.99776 * 326.02477 * 3 2 1 6 6 N 1.31284 * 119.99937 * 347.80081 * 5 3 2 7 7 Si 1.86796 * 120.00110 * 167.80434 * 5 3 2 8 8 H 1.48496 * 109.47647 * 89.99842 * 7 5 3 9 9 H 1.48503 * 109.47307 * 209.99977 * 7 5 3 10 10 H 1.48506 * 109.46809 * 329.99196 * 7 5 3 11 11 C 1.34777 * 119.99797 * 180.27150 * 2 1 3 12 12 O 1.21566 * 120.00064 * 185.06137 * 11 2 1 13 13 C 1.48067 * 120.00116 * 5.06562 * 11 2 1 14 14 C 1.40362 * 119.24905 * 184.73080 * 13 11 2 15 15 C 1.36464 * 119.81088 * 179.73716 * 14 13 11 16 16 C 1.40795 * 118.26853 * 0.54047 * 15 14 13 17 17 C 1.40401 * 121.23771 * 179.67964 * 16 15 14 18 18 C 1.36129 * 119.67066 * 180.02562 * 17 16 15 19 19 C 1.39544 * 120.89340 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 119.47662 * 180.02562 * 19 18 17 21 21 C 1.36134 * 121.05051 * 359.97438 * 19 18 17 22 22 C 1.40777 * 119.73092 * 0.04169 * 21 19 18 23 23 N 1.31997 * 119.24800 * 4.99681 * 13 11 2 24 24 H 1.08999 * 109.47305 * 354.20230 * 1 2 3 25 25 H 1.09000 * 109.47357 * 114.20296 * 1 2 3 26 26 H 1.09004 * 109.47052 * 234.20229 * 1 2 3 27 27 H 0.97005 * 119.99644 * 180.02562 * 6 5 3 28 28 H 1.07994 * 120.09401 * 0.02562 * 14 13 11 29 29 H 1.08001 * 120.86570 * 180.27154 * 15 14 13 30 30 H 1.08002 * 120.16781 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.55417 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.13590 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1838 0.0000 4 1 3.0902 1.2636 0.5227 5 6 1.6309 2.2861 -0.6735 6 7 0.6227 2.1359 -1.5009 7 14 2.3706 3.9795 -0.4004 8 1 3.4632 4.2064 -1.3801 9 1 1.3203 5.0136 -0.5819 10 1 2.9161 4.0648 0.9782 11 6 2.1388 -1.1672 -0.0055 12 8 3.3509 -1.1698 0.0873 13 6 1.4028 -2.4464 -0.1248 14 6 2.1091 -3.6556 -0.0285 15 6 1.4414 -4.8413 -0.1314 16 6 0.0502 -4.8068 -0.3449 17 6 -0.6972 -5.9891 -0.4668 18 6 -2.0409 -5.9185 -0.6733 19 6 -2.6879 -4.6856 -0.7653 20 17 -4.4032 -4.6385 -1.0285 21 6 -1.9956 -3.5190 -0.6509 22 6 -0.6045 -3.5508 -0.4372 23 7 0.0982 -2.4237 -0.3246 24 1 -0.3634 1.0224 0.1038 25 1 -0.3634 -0.4213 -0.9373 26 1 -0.3633 -0.6011 0.8336 27 1 0.2622 2.9042 -1.9707 28 1 3.1771 -3.6476 0.1313 29 1 1.9672 -5.7816 -0.0555 30 1 -0.2086 -6.9497 -0.3971 31 1 -2.6140 -6.8291 -0.7673 32 1 -2.5113 -2.5730 -0.7248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177459602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:11 Heat of formation + Delta-G solvation = 34.402925 kcal Electronic energy + Delta-G solvation = -19939.438816 eV Core-core repulsion = 16698.703221 eV Total energy + Delta-G solvation = -3240.735595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72432 -38.53007 -37.12752 -35.91639 -34.82766 -33.35984 -31.79234 -30.29955 -29.87109 -26.37613 -25.42947 -23.93345 -23.29167 -22.10958 -20.12102 -17.89600 -17.42077 -16.98834 -16.51834 -15.39769 -15.01720 -14.84971 -14.55721 -14.32438 -14.00008 -13.71243 -13.39495 -13.20941 -12.71658 -12.55025 -12.06246 -11.81526 -11.59481 -11.35596 -11.33765 -11.05120 -11.03297 -10.87731 -10.46104 -10.44096 -10.28004 -9.35884 -8.93231 -8.53457 -8.45103 -8.22811 -7.61368 -6.51077 -4.04493 0.35698 0.75114 2.01079 2.05502 2.67220 3.12905 3.18385 3.23454 3.82187 4.00530 4.36076 4.50602 4.55476 4.73912 4.86829 4.92306 5.03213 5.10757 5.20665 5.41258 5.67907 5.78128 5.91469 5.99411 6.12343 6.17758 6.40524 6.49264 6.74302 6.85140 6.94379 7.34661 7.40966 8.02846 8.12255 8.39383 9.02459 9.22868 9.87834 10.51836 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.004480 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.344566 B = 6248.309292 C = 7476.327188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.398 5.398 3 C -0.303 4.303 4 H 0.101 0.899 5 C 0.037 3.963 6 N -0.853 5.853 7 Si 0.931 3.069 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.266 1.266 11 C 0.470 3.530 12 O -0.588 6.588 13 C 0.150 3.850 14 C -0.121 4.121 15 C -0.074 4.074 16 C -0.108 4.108 17 C -0.079 4.079 18 C -0.123 4.123 19 C -0.023 4.023 20 Cl -0.072 7.072 21 C -0.077 4.077 22 C 0.136 3.864 23 N -0.446 5.446 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.274 0.726 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -13.769 1.392 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.113 5.113 3 C -0.433 4.433 4 H 0.119 0.881 5 C -0.171 4.171 6 N -0.489 5.489 7 Si 0.756 3.244 8 H -0.199 1.199 9 H -0.205 1.205 10 H -0.190 1.190 11 C 0.259 3.741 12 O -0.474 6.474 13 C -0.002 4.002 14 C -0.142 4.142 15 C -0.099 4.099 16 C -0.111 4.111 17 C -0.098 4.098 18 C -0.142 4.142 19 C -0.051 4.051 20 Cl -0.044 7.044 21 C -0.097 4.097 22 C 0.012 3.988 23 N -0.160 5.160 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.603 -12.805 1.219 14.942 hybrid contribution 0.350 -0.043 -0.080 0.362 sum -7.253 -12.849 1.138 14.798 Atomic orbital electron populations 1.21733 0.79956 1.01166 0.99888 1.43533 1.06496 1.04378 1.56850 1.19754 1.06705 0.86098 1.30699 0.88145 1.25591 0.96509 1.00855 0.94103 1.69929 1.23897 1.31951 1.23129 0.85864 0.78720 0.80387 0.79406 1.19927 1.20541 1.19014 1.17753 0.86672 0.82681 0.87039 1.90611 1.12878 1.86062 1.57851 1.22067 0.89123 0.95583 0.93438 1.21854 1.02444 0.91672 0.98205 1.21338 0.92487 0.98748 0.97353 1.18962 0.94810 0.94338 1.02960 1.20872 0.93221 0.97350 0.98360 1.20670 0.94813 0.96283 1.02399 1.20479 0.85003 0.94813 1.04809 1.98368 1.12115 1.98905 1.94969 1.20713 0.91936 0.98071 0.98951 1.18828 0.93482 0.88547 0.97901 1.68758 1.07500 1.27564 1.12128 0.90834 0.91909 0.94814 0.91590 0.83452 0.84232 0.84686 0.84939 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.74 7.67 59.85 0.46 3.20 16 2 N -0.40 -10.54 2.95 -123.21 -0.36 -10.91 16 3 C -0.30 -8.38 9.05 -15.04 -0.14 -8.51 16 4 H 0.10 2.84 7.60 -52.49 -0.40 2.44 16 5 C 0.04 0.95 4.96 -17.44 -0.09 0.86 16 6 N -0.85 -22.54 11.28 55.51 0.63 -21.92 16 7 Si 0.93 19.99 29.57 -169.99 -5.03 14.97 16 8 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 C 0.47 12.07 7.60 -12.23 -0.09 11.98 16 12 O -0.59 -16.44 16.09 5.31 0.09 -16.35 16 13 C 0.15 3.19 6.65 -82.97 -0.55 2.64 16 14 C -0.12 -2.10 9.54 -39.42 -0.38 -2.48 16 15 C -0.07 -1.02 9.88 -39.26 -0.39 -1.40 16 16 C -0.11 -1.55 5.75 -106.70 -0.61 -2.17 16 17 C -0.08 -0.88 9.76 -39.53 -0.39 -1.26 16 18 C -0.12 -1.33 9.73 -39.85 -0.39 -1.72 16 19 C -0.02 -0.29 6.27 -39.85 -0.25 -0.54 16 20 Cl -0.07 -0.82 28.91 -51.86 -1.50 -2.32 16 21 C -0.08 -1.14 9.73 -39.38 -0.38 -1.52 16 22 C 0.14 2.30 6.61 -84.85 -0.56 1.74 16 23 N -0.45 -8.94 5.96 -7.56 -0.05 -8.98 16 24 H 0.07 1.80 6.24 -51.93 -0.32 1.48 16 25 H 0.06 1.50 6.95 -51.93 -0.36 1.14 16 26 H 0.03 0.73 7.19 -51.93 -0.37 0.36 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.15 2.47 7.61 -52.49 -0.40 2.07 16 29 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 295.41 15.07 4.45 4.45 Total: -1.00 -30.38 295.41 -8.21 -38.58 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -2.68 Total: 1.66 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.75 Total: 0.82 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.22 Total: -41.81 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.09 Total: -16.35 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.97 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.38 -8.21 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177459602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.986 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds