Wall clock time and date at job start Tue Mar 31 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36696 * 120.00268 * 2 1 4 4 H 1.07995 * 119.99890 * 146.02439 * 3 2 1 5 5 C 1.39166 * 119.99776 * 326.02477 * 3 2 1 6 6 N 1.31284 * 119.99937 * 347.80081 * 5 3 2 7 7 Si 1.86796 * 120.00110 * 167.80434 * 5 3 2 8 8 H 1.48496 * 109.47647 * 89.99842 * 7 5 3 9 9 H 1.48503 * 109.47307 * 209.99977 * 7 5 3 10 10 H 1.48506 * 109.46809 * 329.99196 * 7 5 3 11 11 C 1.34777 * 119.99797 * 180.27150 * 2 1 3 12 12 O 1.21566 * 120.00064 * 185.06137 * 11 2 1 13 13 C 1.48067 * 120.00116 * 5.06562 * 11 2 1 14 14 C 1.40362 * 119.24905 * 184.73080 * 13 11 2 15 15 C 1.36464 * 119.81088 * 179.73716 * 14 13 11 16 16 C 1.40795 * 118.26853 * 0.54047 * 15 14 13 17 17 C 1.40401 * 121.23771 * 179.67964 * 16 15 14 18 18 C 1.36129 * 119.67066 * 180.02562 * 17 16 15 19 19 C 1.39544 * 120.89340 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 119.47662 * 180.02562 * 19 18 17 21 21 C 1.36134 * 121.05051 * 359.97438 * 19 18 17 22 22 C 1.40777 * 119.73092 * 0.04169 * 21 19 18 23 23 N 1.31997 * 119.24800 * 4.99681 * 13 11 2 24 24 H 1.08999 * 109.47305 * 354.20230 * 1 2 3 25 25 H 1.09000 * 109.47357 * 114.20296 * 1 2 3 26 26 H 1.09004 * 109.47052 * 234.20229 * 1 2 3 27 27 H 0.97005 * 119.99644 * 180.02562 * 6 5 3 28 28 H 1.07994 * 120.09401 * 0.02562 * 14 13 11 29 29 H 1.08001 * 120.86570 * 180.27154 * 15 14 13 30 30 H 1.08002 * 120.16781 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.55417 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.13590 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1838 0.0000 4 1 3.0902 1.2636 0.5227 5 6 1.6309 2.2861 -0.6735 6 7 0.6227 2.1359 -1.5009 7 14 2.3706 3.9795 -0.4004 8 1 3.4632 4.2064 -1.3801 9 1 1.3203 5.0136 -0.5819 10 1 2.9161 4.0648 0.9782 11 6 2.1388 -1.1672 -0.0055 12 8 3.3509 -1.1698 0.0873 13 6 1.4028 -2.4464 -0.1248 14 6 2.1091 -3.6556 -0.0285 15 6 1.4414 -4.8413 -0.1314 16 6 0.0502 -4.8068 -0.3449 17 6 -0.6972 -5.9891 -0.4668 18 6 -2.0409 -5.9185 -0.6733 19 6 -2.6879 -4.6856 -0.7653 20 17 -4.4032 -4.6385 -1.0285 21 6 -1.9956 -3.5190 -0.6509 22 6 -0.6045 -3.5508 -0.4372 23 7 0.0982 -2.4237 -0.3246 24 1 -0.3634 1.0224 0.1038 25 1 -0.3634 -0.4213 -0.9373 26 1 -0.3633 -0.6011 0.8336 27 1 0.2622 2.9042 -1.9707 28 1 3.1771 -3.6476 0.1313 29 1 1.9672 -5.7816 -0.0555 30 1 -0.2086 -6.9497 -0.3971 31 1 -2.6140 -6.8291 -0.7673 32 1 -2.5113 -2.5730 -0.7248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177459602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:10 Heat of formation + Delta-G solvation = 16.357699 kcal Electronic energy + Delta-G solvation = -19940.221316 eV Core-core repulsion = 16698.703221 eV Total energy + Delta-G solvation = -3241.518094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02580 -40.25791 -38.34127 -37.05100 -36.79865 -34.64125 -33.69169 -31.58870 -31.02062 -28.28930 -27.15927 -25.45130 -24.58412 -23.22106 -21.77409 -19.19041 -19.07470 -18.53053 -18.02378 -17.14636 -16.41766 -16.33558 -16.12047 -15.67682 -15.43080 -15.20445 -14.73870 -14.33732 -14.24524 -13.86177 -13.65489 -13.45833 -13.24018 -12.98242 -12.68917 -12.65900 -12.47242 -12.11929 -12.06689 -12.00713 -11.46880 -11.15088 -10.84745 -10.16383 -9.77700 -9.59199 -9.32555 -8.45387 -6.14502 -0.82339 -0.44938 0.89350 1.00270 1.31456 1.40201 1.51337 1.54635 2.20410 2.29534 2.79028 2.93632 3.13074 3.24215 3.55361 3.75724 3.88432 3.95727 3.99955 4.17313 4.39719 4.69211 4.81787 4.82825 4.84217 4.99264 5.00470 5.11360 5.24704 5.33072 5.37856 5.47426 5.67660 6.06244 6.35986 6.74538 7.03914 7.27814 7.89851 8.58611 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.004480 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.344566 B = 6248.309292 C = 7476.327188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.141 3.859 2 N -0.423 5.423 3 C -0.353 4.353 4 H 0.078 0.922 5 C 0.003 3.997 6 N -0.883 5.883 7 Si 0.999 3.001 8 H -0.272 1.272 9 H -0.264 1.264 10 H -0.264 1.264 11 C 0.464 3.536 12 O -0.622 6.622 13 C 0.120 3.880 14 C -0.144 4.144 15 C -0.037 4.037 16 C -0.110 4.110 17 C -0.062 4.062 18 C -0.111 4.111 19 C -0.011 4.011 20 Cl -0.059 7.059 21 C -0.102 4.102 22 C 0.109 3.891 23 N -0.467 5.467 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.279 0.721 28 H 0.146 0.854 29 H 0.196 0.804 30 H 0.186 0.814 31 H 0.172 0.828 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 -17.592 1.264 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.138 5.138 3 C -0.481 4.481 4 H 0.096 0.904 5 C -0.201 4.201 6 N -0.519 5.519 7 Si 0.820 3.180 8 H -0.198 1.198 9 H -0.188 1.188 10 H -0.188 1.188 11 C 0.253 3.747 12 O -0.510 6.510 13 C -0.031 4.031 14 C -0.165 4.165 15 C -0.062 4.062 16 C -0.112 4.112 17 C -0.080 4.080 18 C -0.129 4.129 19 C -0.040 4.040 20 Cl -0.030 7.030 21 C -0.121 4.121 22 C -0.015 4.015 23 N -0.180 5.180 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.164 0.836 29 H 0.213 0.787 30 H 0.204 0.796 31 H 0.189 0.811 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.061 -16.636 1.089 18.975 hybrid contribution 0.542 0.705 -0.073 0.893 sum -8.519 -15.931 1.016 18.094 Atomic orbital electron populations 1.21473 0.78904 1.00078 0.99713 1.43697 1.07194 1.04512 1.58382 1.19733 1.07214 0.87885 1.33259 0.90401 1.26410 0.96669 1.03991 0.93054 1.70000 1.24993 1.33150 1.23804 0.84878 0.78145 0.75758 0.79184 1.19788 1.18843 1.18768 1.18541 0.86763 0.84258 0.85115 1.90537 1.14586 1.87251 1.58656 1.21515 0.89969 0.94642 0.97001 1.21841 1.02489 0.91677 1.00499 1.21877 0.92109 0.99234 0.93020 1.19329 0.95438 0.94550 1.01918 1.21373 0.93006 0.97782 0.95851 1.21178 0.95174 0.96629 0.99920 1.20714 0.85708 0.94917 1.02674 1.98384 1.10961 1.98906 1.94703 1.20688 0.91473 0.98925 1.01042 1.19148 0.94181 0.88954 0.99231 1.68478 1.07258 1.30217 1.12045 0.92361 0.92902 0.93741 0.91090 0.83620 0.78698 0.79648 0.81080 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.15 7.67 127.77 0.98 8.13 16 2 N -0.42 -24.04 2.95 -662.00 -1.96 -26.00 16 3 C -0.35 -20.89 9.05 84.16 0.76 -20.13 16 4 H 0.08 4.79 7.60 -2.91 -0.02 4.77 16 5 C 0.00 0.16 4.96 85.00 0.42 0.58 16 6 N -0.88 -48.87 11.28 21.70 0.24 -48.63 16 7 Si 1.00 42.63 29.57 68.60 2.03 44.65 16 8 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 9 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 11 C 0.46 25.49 7.60 86.85 0.66 26.15 16 12 O -0.62 -37.21 16.09 -3.92 -0.06 -37.28 16 13 C 0.12 5.32 6.65 42.25 0.28 5.60 16 14 C -0.14 -4.95 9.54 22.37 0.21 -4.73 16 15 C -0.04 -0.88 9.88 22.48 0.22 -0.66 16 16 C -0.11 -2.74 5.75 -21.21 -0.12 -2.86 16 17 C -0.06 -0.96 9.76 22.31 0.22 -0.74 16 18 C -0.11 -1.75 9.73 22.09 0.21 -1.54 16 19 C -0.01 -0.25 6.27 22.10 0.14 -0.11 16 20 Cl -0.06 -1.16 28.91 -2.72 -0.08 -1.24 16 21 C -0.10 -2.91 9.73 22.40 0.22 -2.69 16 22 C 0.11 3.58 6.61 40.46 0.27 3.84 16 23 N -0.47 -19.31 5.96 -177.83 -1.06 -20.37 16 24 H 0.06 3.05 6.24 -2.39 -0.01 3.04 16 25 H 0.05 2.71 6.95 -2.39 -0.02 2.70 16 26 H 0.04 2.07 7.19 -2.39 -0.02 2.05 16 27 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 28 H 0.15 4.94 7.61 -2.91 -0.02 4.92 16 29 H 0.20 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.19 1.18 8.06 -2.91 -0.02 1.15 16 31 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -73.59 295.41 4.75 -68.84 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.16 Total: 9.17 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 4.47 Total: 10.85 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -2.77 Total: -94.99 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.06 Total: -37.28 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -73.59 4.75 -68.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177459602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.195 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds