Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36802 * 119.99672 * 2 1 4 4 H 1.08001 * 119.99297 * 205.60565 * 3 2 1 5 5 C 1.39080 * 120.00252 * 25.60652 * 3 2 1 6 6 N 1.31335 * 119.99995 * 23.92026 * 5 3 2 7 7 Si 1.86800 * 119.99757 * 203.92624 * 5 3 2 8 8 H 1.48496 * 109.47177 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47286 * 119.99985 * 7 5 3 10 10 H 1.48501 * 109.46872 * 239.99914 * 7 5 3 11 11 C 1.34770 * 119.99837 * 179.97438 * 2 1 3 12 12 O 1.21597 * 120.00107 * 181.02348 * 11 2 1 13 13 C 1.47780 * 120.00463 * 0.75674 * 11 2 1 14 14 C 1.38490 * 119.29009 * 172.65594 * 13 11 2 15 15 C 1.40540 * 118.53911 * 179.97438 * 14 13 11 16 16 C 1.40286 * 122.08514 * 179.97438 * 15 14 13 17 17 C 1.36280 * 119.48089 * 180.02562 * 16 15 14 18 18 C 1.39296 * 120.96979 * 359.97438 * 17 16 15 19 19 C 1.36312 * 121.08749 * 0.02562 * 18 17 16 20 20 C 1.40180 * 119.58437 * 359.97438 * 19 18 17 21 21 C 1.40877 * 121.86073 * 179.97438 * 20 19 18 22 22 Cl 1.73600 * 119.89295 * 0.05006 * 21 20 19 23 23 N 1.30996 * 120.21231 * 179.74552 * 21 20 19 24 24 H 1.09006 * 109.46982 * 263.79173 * 1 2 3 25 25 H 1.08991 * 109.47590 * 23.79583 * 1 2 3 26 26 H 1.09004 * 109.47562 * 143.80139 * 1 2 3 27 27 H 0.97005 * 120.00002 * 179.97438 * 6 5 3 28 28 H 1.08005 * 120.72851 * 359.97432 * 14 13 11 29 29 H 1.07998 * 120.25756 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.51402 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.45771 * 180.02562 * 18 17 16 32 32 H 1.08011 * 120.20664 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1848 0.0000 4 1 3.1494 1.2306 -0.4042 5 6 1.5560 2.3301 0.5205 6 7 0.5925 2.2258 1.4069 7 14 2.1300 4.0167 -0.0411 8 1 3.2201 3.8621 -1.0376 9 1 0.9935 4.7459 -0.6591 10 1 2.6330 4.7828 1.1273 11 6 2.1389 -1.1672 0.0005 12 8 3.3547 -1.1673 0.0193 13 6 1.4001 -2.4470 -0.0158 14 6 2.1006 -3.6317 -0.1695 15 6 1.3823 -4.8396 -0.1822 16 6 2.0162 -6.0819 -0.3338 17 6 1.2675 -7.2206 -0.3392 18 6 -0.1171 -7.1688 -0.1958 19 6 -0.7652 -5.9789 -0.0465 20 6 -0.0287 -4.7862 -0.0361 21 6 -0.6491 -3.5304 0.1145 22 17 -2.3729 -3.4332 0.2953 23 7 0.0712 -2.4363 0.1247 24 1 -0.3633 -0.1111 1.0217 25 1 -0.3634 0.9402 -0.4146 26 1 -0.3634 -0.8293 -0.6069 27 1 0.1792 3.0247 1.7702 28 1 3.1753 -3.6274 -0.2772 29 1 3.0890 -6.1355 -0.4454 30 1 1.7549 -8.1774 -0.4554 31 1 -0.6865 -8.0864 -0.2031 32 1 -1.8395 -5.9553 0.0631 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178665805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = 37.766629 kcal Electronic energy + Delta-G solvation = -20048.203241 eV Core-core repulsion = 16807.613507 eV Total energy + Delta-G solvation = -3240.589734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74122 -38.52246 -37.05081 -36.35386 -34.78917 -32.62027 -31.97679 -31.03397 -29.48456 -26.37756 -25.20548 -24.00379 -23.46880 -22.12291 -20.16792 -17.74423 -17.60646 -16.84750 -16.44187 -15.53013 -15.13698 -14.95493 -14.69695 -14.23622 -14.03675 -13.66642 -13.62304 -13.23686 -12.53287 -12.42152 -12.00340 -11.85904 -11.52703 -11.35958 -11.29369 -11.19016 -11.00005 -10.93618 -10.44587 -10.38503 -9.90444 -9.29489 -9.06119 -8.97953 -8.39884 -7.94110 -7.67612 -6.53286 -3.92678 0.29575 0.80549 1.85228 1.88996 2.79118 3.12501 3.19378 3.26695 3.79953 4.00930 4.39349 4.45780 4.58789 4.71522 4.76713 4.98913 5.04886 5.09532 5.17902 5.35655 5.60833 5.77667 5.87242 5.93697 6.07093 6.32680 6.41170 6.60296 6.74666 6.79181 7.01762 7.31572 7.41983 7.87159 8.04953 8.37392 9.05175 9.27403 9.91892 10.49036 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.025755 B = 0.004758 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.915605 B = 5884.000152 C = 6877.316171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.398 5.398 3 C -0.307 4.307 4 H 0.105 0.895 5 C 0.039 3.961 6 N -0.841 5.841 7 Si 0.924 3.076 8 H -0.264 1.264 9 H -0.277 1.277 10 H -0.279 1.279 11 C 0.465 3.535 12 O -0.593 6.593 13 C 0.110 3.890 14 C -0.112 4.112 15 C -0.016 4.016 16 C -0.105 4.105 17 C -0.102 4.102 18 C -0.124 4.124 19 C -0.084 4.084 20 C -0.100 4.100 21 C 0.203 3.797 22 Cl -0.030 7.030 23 N -0.444 5.444 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.273 0.727 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 -15.609 -3.153 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.111 5.111 3 C -0.436 4.436 4 H 0.123 0.877 5 C -0.170 4.170 6 N -0.476 5.476 7 Si 0.749 3.251 8 H -0.188 1.188 9 H -0.202 1.202 10 H -0.204 1.204 11 C 0.254 3.746 12 O -0.480 6.480 13 C -0.016 4.016 14 C -0.134 4.134 15 C -0.021 4.021 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.143 4.143 19 C -0.104 4.104 20 C -0.104 4.104 21 C 0.023 3.977 22 Cl -0.002 7.002 23 N -0.157 5.157 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.458 -14.486 -2.906 15.750 hybrid contribution 0.129 0.156 -0.084 0.220 sum -5.329 -14.330 -2.990 15.578 Atomic orbital electron populations 1.22004 0.79884 1.00066 1.01882 1.43646 1.06515 1.04547 1.56383 1.19835 1.01998 0.83913 1.37819 0.87698 1.25488 0.96639 1.00681 0.94161 1.70070 1.24520 1.30890 1.22146 0.85921 0.79045 0.81007 0.79130 1.18759 1.20240 1.20446 1.17381 0.86815 0.82227 0.88165 1.90618 1.12449 1.85831 1.59095 1.21425 0.86886 0.95999 0.97303 1.22151 1.01909 0.90380 0.98980 1.18068 0.91608 0.94412 0.98039 1.20998 1.00285 0.90911 1.00166 1.20958 0.94060 0.98449 0.98608 1.20873 0.94625 0.97867 1.00911 1.21032 1.00126 0.91246 0.97996 1.18509 0.93538 0.93297 1.05048 1.21986 0.87557 0.89285 0.98898 1.98380 1.07926 1.98403 1.95444 1.67604 1.07553 1.28682 1.11846 0.92489 0.92926 0.91148 0.91649 0.82844 0.84728 0.85588 0.85639 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 7.60 59.85 0.46 3.00 16 2 N -0.40 -10.75 2.99 -123.31 -0.37 -11.12 16 3 C -0.31 -8.65 9.12 -15.02 -0.14 -8.79 16 4 H 0.11 3.04 7.55 -52.49 -0.40 2.64 16 5 C 0.04 1.02 4.74 -17.45 -0.08 0.94 16 6 N -0.84 -22.63 11.67 55.50 0.65 -21.98 16 7 Si 0.92 20.13 29.62 -169.99 -5.03 15.10 16 8 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 9 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 C 0.46 12.20 7.59 -12.36 -0.09 12.10 16 12 O -0.59 -16.94 16.03 5.28 0.08 -16.86 16 13 C 0.11 2.39 6.60 -83.09 -0.55 1.84 16 14 C -0.11 -2.06 9.41 -38.62 -0.36 -2.42 16 15 C -0.02 -0.25 5.74 -106.83 -0.61 -0.86 16 16 C -0.11 -1.25 9.81 -39.52 -0.39 -1.64 16 17 C -0.10 -0.99 9.95 -39.89 -0.40 -1.39 16 18 C -0.12 -1.22 9.95 -39.88 -0.40 -1.61 16 19 C -0.08 -0.99 9.45 -39.55 -0.37 -1.37 16 20 C -0.10 -1.52 5.75 -106.74 -0.61 -2.13 16 21 C 0.20 3.44 7.35 -16.91 -0.12 3.32 16 22 Cl -0.03 -0.43 27.72 -51.86 -1.44 -1.86 16 23 N -0.44 -8.99 5.92 -6.65 -0.04 -9.03 16 24 H 0.06 1.44 7.91 -51.93 -0.41 1.03 16 25 H 0.05 1.29 7.06 -51.93 -0.37 0.92 16 26 H 0.07 1.57 5.36 -51.94 -0.28 1.29 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.15 2.71 7.62 -52.48 -0.40 2.31 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.13 1.34 7.03 -52.48 -0.37 0.97 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -31.35 293.34 -8.03 -39.38 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.62 Total: 0.97 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.68 Total: 0.98 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.24 Total: -42.13 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.08 Total: -16.86 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.44 Total: -1.86 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.35 -8.03 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178665805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.143 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds