Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36802 * 119.99672 * 2 1 4 4 H 1.08001 * 119.99297 * 205.60565 * 3 2 1 5 5 C 1.39080 * 120.00252 * 25.60652 * 3 2 1 6 6 N 1.31335 * 119.99995 * 23.92026 * 5 3 2 7 7 Si 1.86800 * 119.99757 * 203.92624 * 5 3 2 8 8 H 1.48496 * 109.47177 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47286 * 119.99985 * 7 5 3 10 10 H 1.48501 * 109.46872 * 239.99914 * 7 5 3 11 11 C 1.34770 * 119.99837 * 179.97438 * 2 1 3 12 12 O 1.21597 * 120.00107 * 181.02348 * 11 2 1 13 13 C 1.47780 * 120.00463 * 0.75674 * 11 2 1 14 14 C 1.38490 * 119.29009 * 172.65594 * 13 11 2 15 15 C 1.40540 * 118.53911 * 179.97438 * 14 13 11 16 16 C 1.40286 * 122.08514 * 179.97438 * 15 14 13 17 17 C 1.36280 * 119.48089 * 180.02562 * 16 15 14 18 18 C 1.39296 * 120.96979 * 359.97438 * 17 16 15 19 19 C 1.36312 * 121.08749 * 0.02562 * 18 17 16 20 20 C 1.40180 * 119.58437 * 359.97438 * 19 18 17 21 21 C 1.40877 * 121.86073 * 179.97438 * 20 19 18 22 22 Cl 1.73600 * 119.89295 * 0.05006 * 21 20 19 23 23 N 1.30996 * 120.21231 * 179.74552 * 21 20 19 24 24 H 1.09006 * 109.46982 * 263.79173 * 1 2 3 25 25 H 1.08991 * 109.47590 * 23.79583 * 1 2 3 26 26 H 1.09004 * 109.47562 * 143.80139 * 1 2 3 27 27 H 0.97005 * 120.00002 * 179.97438 * 6 5 3 28 28 H 1.08005 * 120.72851 * 359.97432 * 14 13 11 29 29 H 1.07998 * 120.25756 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.51402 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.45771 * 180.02562 * 18 17 16 32 32 H 1.08011 * 120.20664 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1848 0.0000 4 1 3.1494 1.2306 -0.4042 5 6 1.5560 2.3301 0.5205 6 7 0.5925 2.2258 1.4069 7 14 2.1300 4.0167 -0.0411 8 1 3.2201 3.8621 -1.0376 9 1 0.9935 4.7459 -0.6591 10 1 2.6330 4.7828 1.1273 11 6 2.1389 -1.1672 0.0005 12 8 3.3547 -1.1673 0.0193 13 6 1.4001 -2.4470 -0.0158 14 6 2.1006 -3.6317 -0.1695 15 6 1.3823 -4.8396 -0.1822 16 6 2.0162 -6.0819 -0.3338 17 6 1.2675 -7.2206 -0.3392 18 6 -0.1171 -7.1688 -0.1958 19 6 -0.7652 -5.9789 -0.0465 20 6 -0.0287 -4.7862 -0.0361 21 6 -0.6491 -3.5304 0.1145 22 17 -2.3729 -3.4332 0.2953 23 7 0.0712 -2.4363 0.1247 24 1 -0.3633 -0.1111 1.0217 25 1 -0.3634 0.9402 -0.4146 26 1 -0.3634 -0.8293 -0.6069 27 1 0.1792 3.0247 1.7702 28 1 3.1753 -3.6274 -0.2772 29 1 3.0890 -6.1355 -0.4454 30 1 1.7549 -8.1774 -0.4554 31 1 -0.6865 -8.0864 -0.2031 32 1 -1.8395 -5.9553 0.0631 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178665805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = 18.594722 kcal Electronic energy + Delta-G solvation = -20049.034597 eV Core-core repulsion = 16807.613507 eV Total energy + Delta-G solvation = -3241.421090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.04955 -40.25159 -38.32498 -37.65883 -36.81041 -33.94075 -33.74708 -32.28844 -30.76608 -28.30284 -27.00470 -25.24875 -24.94460 -23.23768 -21.81160 -19.28146 -18.89591 -18.70624 -17.75571 -17.19012 -16.59699 -16.35602 -16.26926 -15.97981 -15.30821 -15.18578 -14.89222 -14.67356 -14.08249 -13.79410 -13.57073 -13.33810 -13.29961 -12.91462 -12.68969 -12.60145 -12.42905 -12.30482 -12.11872 -12.04418 -11.16340 -11.06192 -10.89037 -10.23488 -10.10755 -9.76057 -9.10572 -8.49378 -6.05933 -0.90096 -0.36889 0.58076 0.77913 1.28898 1.39196 1.55187 1.56358 2.21458 2.34662 2.81261 2.88520 3.08281 3.30592 3.50796 3.65768 3.78428 3.96892 4.14663 4.28161 4.34937 4.61895 4.66514 4.80346 4.87713 5.02106 5.09895 5.28637 5.36304 5.38180 5.41044 5.45249 5.86038 5.98536 6.30421 6.54596 7.02569 7.29250 7.90525 8.54284 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.025755 B = 0.004758 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.915605 B = 5884.000152 C = 6877.316171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.422 5.422 3 C -0.359 4.359 4 H 0.080 0.920 5 C 0.006 3.994 6 N -0.874 5.874 7 Si 0.995 3.005 8 H -0.267 1.267 9 H -0.261 1.261 10 H -0.271 1.271 11 C 0.462 3.538 12 O -0.629 6.629 13 C 0.068 3.932 14 C -0.094 4.094 15 C -0.035 4.035 16 C -0.111 4.111 17 C -0.083 4.083 18 C -0.095 4.095 19 C -0.098 4.098 20 C -0.100 4.100 21 C 0.196 3.804 22 Cl -0.007 7.007 23 N -0.475 5.475 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.280 0.720 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 -19.697 -3.694 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.135 5.135 3 C -0.487 4.487 4 H 0.097 0.903 5 C -0.200 4.200 6 N -0.510 5.510 7 Si 0.817 3.183 8 H -0.191 1.191 9 H -0.185 1.185 10 H -0.197 1.197 11 C 0.252 3.748 12 O -0.519 6.519 13 C -0.057 4.057 14 C -0.116 4.116 15 C -0.040 4.040 16 C -0.129 4.129 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.103 4.103 21 C 0.016 3.984 22 Cl 0.021 6.979 23 N -0.188 5.188 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.188 0.812 31 H 0.188 0.812 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.689 -18.600 -3.445 20.064 hybrid contribution 0.425 0.802 0.083 0.912 sum -6.263 -17.798 -3.362 19.165 Atomic orbital electron populations 1.21786 0.78764 0.99949 1.00788 1.43796 1.07247 1.04601 1.57889 1.19774 1.02144 0.85711 1.41061 0.90254 1.26340 0.96504 1.03807 0.93298 1.70129 1.25746 1.32181 1.22904 0.84890 0.78825 0.75994 0.78625 1.19084 1.18532 1.19653 1.18155 0.86828 0.83789 0.86057 1.90541 1.14253 1.87110 1.59999 1.20725 0.87961 0.94573 1.02414 1.22260 1.01862 0.90748 0.96745 1.18283 0.91893 0.94614 0.99181 1.21320 1.01746 0.89980 0.99822 1.21535 0.94103 0.99369 0.95162 1.21497 0.94981 0.98604 0.96222 1.21307 1.01131 0.90604 0.98758 1.18788 0.93689 0.93804 1.04048 1.22317 0.88402 0.89409 0.98260 1.98379 1.05831 1.98393 1.95289 1.67253 1.07115 1.30835 1.13617 0.94449 0.94201 0.89385 0.91014 0.83031 0.82727 0.81154 0.81165 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.73 7.60 127.77 0.97 7.70 16 2 N -0.42 -24.52 2.99 -662.29 -1.98 -26.50 16 3 C -0.36 -21.75 9.12 84.12 0.77 -20.98 16 4 H 0.08 5.03 7.55 -2.91 -0.02 5.01 16 5 C 0.01 0.33 4.74 84.97 0.40 0.73 16 6 N -0.87 -49.26 11.67 21.68 0.25 -49.00 16 7 Si 1.00 43.04 29.62 68.60 2.03 45.07 16 8 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 9 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 C 0.46 26.03 7.59 86.77 0.66 26.69 16 12 O -0.63 -38.68 16.03 -4.02 -0.06 -38.74 16 13 C 0.07 3.09 6.60 41.45 0.27 3.36 16 14 C -0.09 -3.53 9.41 22.89 0.22 -3.31 16 15 C -0.03 -1.01 5.74 -21.30 -0.12 -1.13 16 16 C -0.11 -2.16 9.81 22.31 0.22 -1.94 16 17 C -0.08 -1.06 9.95 22.07 0.22 -0.84 16 18 C -0.10 -1.20 9.95 22.08 0.22 -0.98 16 19 C -0.10 -1.87 9.45 22.29 0.21 -1.65 16 20 C -0.10 -2.80 5.75 -21.24 -0.12 -2.92 16 21 C 0.20 6.58 7.35 85.46 0.63 7.21 16 22 Cl -0.01 -0.20 27.72 -2.72 -0.08 -0.28 16 23 N -0.47 -19.94 5.92 -174.95 -1.04 -20.98 16 24 H 0.04 2.02 7.91 -2.38 -0.02 2.00 16 25 H 0.04 2.08 7.06 -2.39 -0.02 2.06 16 26 H 0.09 4.16 5.36 -2.41 -0.01 4.15 16 27 H 0.28 14.41 8.31 -92.70 -0.77 13.64 16 28 H 0.15 5.55 7.62 -2.91 -0.02 5.52 16 29 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.15 2.33 7.03 -2.90 -0.02 2.31 16 Total: -1.00 -75.88 293.34 4.84 -71.04 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.17 Total: 7.45 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 4.54 Total: 11.94 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -2.76 Total: -96.47 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.06 Total: -38.74 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -75.88 4.84 -71.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178665805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.632 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds