Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00381 * 2 1 4 4 H 1.48498 * 109.46893 * 239.99675 * 3 2 1 5 5 H 1.48506 * 109.46697 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47168 * 119.99647 * 3 2 1 7 7 C 1.38736 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00172 * 185.12368 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25992 * 10 9 7 12 12 C 1.38136 * 120.20695 * 179.71907 * 11 10 9 13 13 C 1.38080 * 120.24701 * 0.55062 * 12 11 10 14 14 C 1.39655 * 120.03436 * 359.72814 * 13 12 11 15 15 C 1.47821 * 120.10405 * 179.97438 * 14 13 12 16 16 O 1.21554 * 120.00011 * 180.02562 * 15 14 13 17 17 N 1.34774 * 120.00053 * 0.02562 * 15 14 13 18 18 C 1.39418 * 120.00256 * 180.02562 * 17 15 14 19 19 C 1.42038 * 126.89479 * 359.70307 * 18 17 15 20 20 C 1.35241 * 103.95780 * 179.91302 * 19 18 17 21 21 O 1.34093 * 106.61177 * 0.34876 * 20 19 18 22 22 N 1.20917 * 111.74879 * 359.76650 * 21 20 19 23 23 C 1.38830 * 120.02245 * 85.52970 * 10 9 7 24 24 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.89579 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.88297 * 180.28206 * 12 11 10 27 27 H 1.08002 * 119.98454 * 179.70023 * 13 12 11 28 28 H 0.97000 * 119.99642 * 359.97438 * 17 15 14 29 29 H 1.07999 * 128.01929 * 0.04130 * 19 18 17 30 30 H 1.07999 * 126.69722 * 180.11405 * 20 19 18 31 31 H 1.08005 * 120.11891 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0099 -1.2015 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1563 11 6 3.0330 -4.4331 -0.9802 12 6 4.0903 -5.3144 -0.8630 13 6 4.5910 -5.6382 0.3824 14 6 4.0327 -5.0703 1.5296 15 6 4.5672 -5.4163 2.8637 16 8 4.0795 -4.9212 3.8609 17 7 5.5953 -6.2807 2.9742 18 6 6.0991 -6.6075 4.2325 19 6 5.6475 -6.1153 5.4860 20 6 6.4487 -6.7299 6.3856 21 8 7.2911 -7.5021 5.6840 22 7 7.0858 -7.4239 4.4950 23 6 2.9692 -4.1761 1.4127 24 1 -0.4850 0.8401 -0.0004 25 1 2.6427 -4.1875 -1.9568 26 1 4.5241 -5.7551 -1.7484 27 1 5.4146 -6.3314 0.4695 28 1 5.9842 -6.6761 2.1784 29 1 4.8480 -5.4146 5.6766 30 1 6.4188 -6.6175 7.4593 31 1 2.5337 -3.7333 2.2963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183725174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = 59.774405 kcal Electronic energy + Delta-G solvation = -19088.137430 eV Core-core repulsion = 15850.545732 eV Total energy + Delta-G solvation = -3237.591698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.02567 -40.41525 -38.14509 -35.73969 -32.88914 -32.56254 -31.72580 -30.81349 -30.51736 -25.62698 -24.79288 -23.41664 -22.63743 -21.85269 -20.70127 -18.58031 -18.28802 -17.74681 -17.40650 -16.71329 -15.97254 -15.37556 -15.19685 -14.89933 -14.55699 -14.30726 -13.79913 -13.56377 -13.30235 -13.03456 -12.55647 -11.86342 -11.77787 -11.62449 -11.27018 -11.22794 -11.11462 -10.77975 -10.20034 -9.98087 -9.88973 -9.21804 -9.15581 -9.04566 -8.73294 -8.13806 -6.78637 -6.33952 -4.08972 0.84992 1.34767 1.52833 2.05908 2.36559 2.92387 3.14128 3.16349 3.19451 3.23178 3.37880 3.95650 4.14699 4.17910 4.49591 4.82380 4.94304 5.02479 5.03315 5.09492 5.32130 5.40424 5.58474 5.69202 5.77237 5.83598 6.09722 6.21881 6.39233 6.49749 6.77551 6.95271 7.06098 7.51866 7.83946 8.12221 8.26687 9.11845 10.72705 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.003633 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.846587 B = 7704.885237 C = 8404.159229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.076 0.924 9 S -0.031 6.031 10 C -0.107 4.107 11 C -0.049 4.049 12 C -0.138 4.138 13 C -0.088 4.088 14 C -0.155 4.155 15 C 0.576 3.424 16 O -0.508 6.508 17 N -0.633 5.633 18 C 0.250 3.750 19 C -0.226 4.226 20 C -0.052 4.052 21 O 0.093 5.907 22 N -0.395 5.395 23 C -0.013 4.013 24 H 0.271 0.729 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.418 0.582 29 H 0.192 0.808 30 H 0.220 0.780 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 -13.032 5.942 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.671 4.671 8 H 0.094 0.906 9 S 0.204 5.796 10 C -0.217 4.217 11 C -0.070 4.070 12 C -0.158 4.158 13 C -0.107 4.107 14 C -0.161 4.161 15 C 0.366 3.634 16 O -0.381 6.381 17 N -0.285 5.285 18 C 0.000 4.000 19 C -0.249 4.249 20 C -0.134 4.134 21 O 0.034 5.966 22 N -0.112 5.112 23 C -0.035 4.035 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.145 0.855 27 H 0.136 0.864 28 H 0.256 0.744 29 H 0.209 0.791 30 H 0.237 0.763 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.388 -13.422 5.832 17.946 hybrid contribution 1.515 1.531 0.005 2.154 sum 11.903 -11.892 5.837 17.809 Atomic orbital electron populations 1.69970 1.05918 1.27891 1.46672 1.25000 0.95123 0.99123 0.94206 0.86175 0.79262 0.80840 0.79049 1.19781 1.20676 1.19768 1.22800 0.94866 0.90162 1.59243 0.90616 1.83648 1.03937 0.97062 1.94959 1.22892 1.03055 1.02078 0.93703 1.22039 0.92943 0.92950 0.99033 1.21081 0.98049 0.99784 0.96908 1.21166 0.98664 0.98489 0.92365 1.19557 1.01437 1.04275 0.90786 1.18523 0.77844 0.77035 0.90046 1.90721 1.57954 1.51232 1.38230 1.42516 1.34713 1.45913 1.05391 1.20655 0.94346 0.96626 0.88362 1.23130 1.05810 1.06684 0.89253 1.25981 0.92303 0.94637 1.00447 1.84800 1.47432 1.52717 1.11684 1.74040 1.18942 1.22343 0.95840 1.21970 0.91476 0.91543 0.98463 0.91915 0.84775 0.85510 0.86387 0.74406 0.79087 0.76311 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.95 13.22 55.49 0.73 -24.22 16 2 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -14.40 9.46 30.92 0.29 -14.11 16 8 H 0.08 2.06 7.79 -52.49 -0.41 1.65 16 9 S -0.03 -0.76 21.40 -107.50 -2.30 -3.07 16 10 C -0.11 -2.17 5.45 -39.00 -0.21 -2.38 16 11 C -0.05 -0.82 9.79 -39.25 -0.38 -1.20 16 12 C -0.14 -1.85 10.02 -39.68 -0.40 -2.25 16 13 C -0.09 -1.13 9.54 -39.11 -0.37 -1.50 16 14 C -0.16 -2.45 5.87 -105.00 -0.62 -3.07 16 15 C 0.58 8.85 7.74 -12.34 -0.10 8.76 16 16 O -0.51 -9.05 13.62 5.32 0.07 -8.98 16 17 N -0.63 -8.07 5.37 -12.30 -0.07 -8.13 16 18 C 0.25 3.33 8.17 -154.89 -1.27 2.06 16 19 C -0.23 -2.73 9.86 -39.19 -0.39 -3.12 16 20 C -0.05 -0.45 12.28 29.66 0.36 -0.09 16 21 O 0.09 1.02 11.19 17.04 0.19 1.21 16 22 N -0.40 -5.09 12.10 31.18 0.38 -4.71 16 23 C -0.01 -0.24 9.34 -38.91 -0.36 -0.61 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.12 1.06 6.40 -52.49 -0.34 0.72 16 28 H 0.42 4.17 6.85 -40.82 -0.28 3.89 16 29 H 0.19 2.49 6.22 -52.49 -0.33 2.16 16 30 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 2.90 7.65 -52.48 -0.40 2.50 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -32.25 298.18 -7.21 -39.46 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -2.16 Total: 3.49 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.53 Total: -15.55 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 1.04 Total: -37.07 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.26 Total: -7.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.30 Total: -3.07 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.25 -7.21 -39.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183725174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.236 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds