Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00381 * 2 1 4 4 H 1.48498 * 109.46893 * 239.99675 * 3 2 1 5 5 H 1.48506 * 109.46697 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47168 * 119.99647 * 3 2 1 7 7 C 1.38736 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00172 * 185.12368 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25992 * 10 9 7 12 12 C 1.38136 * 120.20695 * 179.71907 * 11 10 9 13 13 C 1.38080 * 120.24701 * 0.55062 * 12 11 10 14 14 C 1.39655 * 120.03436 * 359.72814 * 13 12 11 15 15 C 1.47821 * 120.10405 * 179.97438 * 14 13 12 16 16 O 1.21554 * 120.00011 * 180.02562 * 15 14 13 17 17 N 1.34774 * 120.00053 * 0.02562 * 15 14 13 18 18 C 1.39418 * 120.00256 * 180.02562 * 17 15 14 19 19 C 1.42038 * 126.89479 * 359.70307 * 18 17 15 20 20 C 1.35241 * 103.95780 * 179.91302 * 19 18 17 21 21 O 1.34093 * 106.61177 * 0.34876 * 20 19 18 22 22 N 1.20917 * 111.74879 * 359.76650 * 21 20 19 23 23 C 1.38830 * 120.02245 * 85.52970 * 10 9 7 24 24 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.89579 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.88297 * 180.28206 * 12 11 10 27 27 H 1.08002 * 119.98454 * 179.70023 * 13 12 11 28 28 H 0.97000 * 119.99642 * 359.97438 * 17 15 14 29 29 H 1.07999 * 128.01929 * 0.04130 * 19 18 17 30 30 H 1.07999 * 126.69722 * 180.11405 * 20 19 18 31 31 H 1.08005 * 120.11891 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0099 -1.2015 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1563 11 6 3.0330 -4.4331 -0.9802 12 6 4.0903 -5.3144 -0.8630 13 6 4.5910 -5.6382 0.3824 14 6 4.0327 -5.0703 1.5296 15 6 4.5672 -5.4163 2.8637 16 8 4.0795 -4.9212 3.8609 17 7 5.5953 -6.2807 2.9742 18 6 6.0991 -6.6075 4.2325 19 6 5.6475 -6.1153 5.4860 20 6 6.4487 -6.7299 6.3856 21 8 7.2911 -7.5021 5.6840 22 7 7.0858 -7.4239 4.4950 23 6 2.9692 -4.1761 1.4127 24 1 -0.4850 0.8401 -0.0004 25 1 2.6427 -4.1875 -1.9568 26 1 4.5241 -5.7551 -1.7484 27 1 5.4146 -6.3314 0.4695 28 1 5.9842 -6.6761 2.1784 29 1 4.8480 -5.4146 5.6766 30 1 6.4188 -6.6175 7.4593 31 1 2.5337 -3.7333 2.2963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183725174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = 39.297916 kcal Electronic energy + Delta-G solvation = -19089.025358 eV Core-core repulsion = 15850.545732 eV Total energy + Delta-G solvation = -3238.479626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.93059 -41.61588 -39.41007 -36.84319 -34.65946 -33.89986 -32.66590 -32.07103 -31.74258 -27.74833 -25.96068 -24.41897 -23.85120 -22.89080 -21.88724 -20.03263 -19.43982 -18.92241 -18.65812 -17.73379 -17.20986 -16.93601 -16.74214 -16.38866 -15.87464 -15.61289 -15.01675 -14.70537 -14.64822 -14.15659 -13.95509 -13.29804 -13.17256 -12.96628 -12.93241 -12.69896 -12.57178 -12.42128 -11.78611 -11.40997 -11.21638 -10.81326 -10.72453 -10.17758 -9.91037 -9.74872 -8.81810 -8.39952 -6.20192 -0.38994 0.18630 0.50741 1.05901 1.27169 1.32566 1.38701 1.45323 1.65488 1.79915 2.23088 2.40860 2.70971 2.93516 3.21611 3.40154 3.45082 3.84165 3.88999 3.94636 4.22920 4.29840 4.39845 4.56630 4.65782 4.86215 4.87162 5.10901 5.22437 5.26149 5.37552 5.44680 5.76748 5.98227 6.14882 6.71125 7.00726 7.25069 8.66886 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.003633 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.846587 B = 7704.885237 C = 8404.159229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.069 0.931 9 S -0.090 6.090 10 C -0.129 4.129 11 C -0.055 4.055 12 C -0.119 4.119 13 C -0.062 4.062 14 C -0.155 4.155 15 C 0.577 3.423 16 O -0.541 6.541 17 N -0.617 5.617 18 C 0.227 3.773 19 C -0.264 4.264 20 C -0.012 4.012 21 O 0.097 5.903 22 N -0.406 5.406 23 C -0.035 4.035 24 H 0.274 0.726 25 H 0.138 0.862 26 H 0.178 0.822 27 H 0.171 0.829 28 H 0.431 0.569 29 H 0.177 0.823 30 H 0.272 0.728 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.549 -14.645 5.869 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.686 4.686 8 H 0.087 0.913 9 S 0.145 5.855 10 C -0.240 4.240 11 C -0.076 4.076 12 C -0.138 4.138 13 C -0.081 4.081 14 C -0.160 4.160 15 C 0.367 3.633 16 O -0.417 6.417 17 N -0.270 5.270 18 C -0.022 4.022 19 C -0.287 4.287 20 C -0.093 4.093 21 O 0.037 5.963 22 N -0.122 5.122 23 C -0.057 4.057 24 H 0.083 0.917 25 H 0.156 0.844 26 H 0.195 0.805 27 H 0.188 0.812 28 H 0.272 0.728 29 H 0.194 0.806 30 H 0.287 0.713 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.638 -15.077 5.733 21.122 hybrid contribution 0.634 1.831 0.118 1.941 sum 14.271 -13.246 5.851 20.331 Atomic orbital electron populations 1.70093 1.07502 1.28899 1.47675 1.25978 0.96014 1.02797 0.93579 0.85127 0.78074 0.76316 0.79321 1.18581 1.19628 1.19503 1.23054 0.94717 0.91647 1.59212 0.91321 1.83528 1.08254 0.98391 1.95330 1.22519 1.03131 1.02803 0.95576 1.22150 0.94019 0.93549 0.97881 1.21555 0.95798 0.97565 0.98904 1.21733 0.98449 0.97122 0.90782 1.19575 1.00475 1.03634 0.92348 1.18426 0.78216 0.77219 0.89423 1.90719 1.59175 1.52617 1.39154 1.42203 1.33724 1.44968 1.06135 1.20908 0.95093 0.97493 0.88722 1.23155 1.07186 1.08322 0.90018 1.26771 0.89336 0.91350 1.01837 1.84774 1.47518 1.52682 1.11289 1.74051 1.18853 1.22430 0.96840 1.21651 0.93452 0.93608 0.97014 0.91662 0.84383 0.80509 0.81196 0.72798 0.80617 0.71283 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.86 13.22 21.64 0.29 -53.57 16 2 C 0.02 1.23 5.49 84.84 0.47 1.70 16 3 Si 0.99 43.87 29.55 68.60 2.03 45.89 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -30.98 9.46 67.94 0.64 -30.34 16 8 H 0.07 3.88 7.79 -2.91 -0.02 3.86 16 9 S -0.09 -4.77 21.40 -56.49 -1.21 -5.98 16 10 C -0.13 -5.44 5.45 22.65 0.12 -5.31 16 11 C -0.06 -1.81 9.79 22.48 0.22 -1.59 16 12 C -0.12 -2.69 10.02 22.21 0.22 -2.46 16 13 C -0.06 -1.35 9.54 22.57 0.22 -1.14 16 14 C -0.16 -4.75 5.87 -20.11 -0.12 -4.87 16 15 C 0.58 17.50 7.74 86.78 0.67 18.17 16 16 O -0.54 -19.97 13.62 -3.89 -0.05 -20.03 16 17 N -0.62 -14.58 5.37 -312.15 -1.68 -16.25 16 18 C 0.23 5.69 8.17 134.14 1.10 6.78 16 19 C -0.26 -6.09 9.86 22.52 0.22 -5.86 16 20 C -0.01 -0.17 12.28 67.13 0.82 0.65 16 21 O 0.10 1.83 11.19 71.14 0.80 2.63 16 22 N -0.41 -9.52 12.10 -56.34 -0.68 -10.20 16 23 C -0.04 -1.41 9.34 22.70 0.21 -1.20 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 25 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 26 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 27 H 0.17 1.97 6.40 -2.91 -0.02 1.95 16 28 H 0.43 7.12 6.85 -92.71 -0.63 6.49 16 29 H 0.18 4.68 6.22 -2.91 -0.02 4.66 16 30 H 0.27 0.73 8.06 -2.91 -0.02 0.71 16 31 H 0.11 5.00 7.65 -2.91 -0.02 4.97 16 Total: -1.00 -76.28 298.18 4.85 -71.43 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.56 Total: 11.56 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.80 Total: -25.47 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.07 Total: -80.03 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.74 Total: -17.40 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -1.21 Total: -5.98 kcal Total: -76.28 4.85 -71.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183725174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.727 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds