Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47288 * 2 1 4 4 H 1.09003 * 109.47477 * 54.99873 * 3 2 1 5 5 C 1.50696 * 109.47338 * 175.00133 * 3 2 1 6 6 H 1.08002 * 120.00292 * 119.99727 * 5 3 2 7 7 C 1.37876 * 119.99908 * 299.99935 * 5 3 2 8 8 N 1.31510 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00086 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47176 * 89.99972 * 9 7 5 11 11 H 1.48503 * 109.47463 * 209.99806 * 9 7 5 12 12 H 1.48504 * 109.47385 * 330.00178 * 9 7 5 13 13 N 1.46502 * 109.46938 * 295.00422 * 3 2 1 14 14 C 1.34773 * 120.00591 * 84.99916 * 13 3 2 15 15 O 1.21719 * 119.99731 * 359.97438 * 14 13 3 16 16 C 1.46545 * 120.00257 * 179.97438 * 14 13 3 17 17 C 1.37955 * 126.22117 * 179.97438 * 16 14 13 18 18 C 1.39796 * 107.12496 * 179.97438 * 17 16 14 19 19 Cl 1.73601 * 126.05940 * 179.97438 * 18 17 16 20 20 C 1.35721 * 107.87696 * 0.02562 * 18 17 16 21 21 Cl 1.73599 * 125.58240 * 179.97438 * 20 18 17 22 22 N 1.35667 * 108.82942 * 0.26039 * 20 18 17 23 23 H 0.96995 * 125.69078 * 179.73883 * 22 20 18 24 24 H 1.09004 * 109.47344 * 300.00239 * 1 2 3 25 25 H 1.08997 * 109.47306 * 59.99763 * 1 2 3 26 26 H 1.09001 * 109.47172 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46925 * 240.00041 * 2 1 3 28 28 H 1.09004 * 109.46981 * 120.00088 * 2 1 3 29 29 H 0.97008 * 120.00417 * 179.97438 * 8 7 5 30 30 H 0.97004 * 119.99308 * 264.99634 * 13 3 2 31 31 H 1.08001 * 126.43486 * 359.93075 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8800 1.3811 10 1 6.4428 2.1129 2.0836 11 1 6.4391 -0.3111 2.1546 12 1 6.6131 0.8394 0.0269 13 7 1.6523 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3424 2.6318 -0.4310 16 6 0.0476 3.3200 -2.6190 17 6 -1.1589 3.9374 -2.8764 18 6 -1.1008 4.4251 -4.1852 19 17 -2.3608 5.2875 -5.0113 20 6 0.1150 4.1040 -4.6959 21 17 0.6734 4.4897 -6.2937 22 7 0.8199 3.4266 -3.7553 23 1 1.7186 3.0781 -3.8636 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0610 2.9500 30 1 2.2719 2.1231 -1.9978 31 1 -1.9921 4.0265 -2.1950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183914479.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = -32.050214 kcal Electronic energy + Delta-G solvation = -18440.593180 eV Core-core repulsion = 15194.543111 eV Total energy + Delta-G solvation = -3246.050069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.59540 -40.32888 -37.90449 -37.50487 -36.98599 -34.41607 -33.00679 -32.19399 -30.35055 -28.77326 -25.29508 -23.98368 -22.19040 -21.62883 -21.25754 -20.44436 -18.39025 -17.33127 -17.09446 -16.68583 -16.16467 -15.83228 -15.69937 -15.05178 -14.79700 -14.55682 -14.38323 -13.90339 -13.51861 -13.17701 -12.98450 -12.91871 -12.81866 -12.69323 -12.47387 -12.18687 -12.08599 -11.94313 -11.58972 -11.08973 -11.04065 -10.54261 -10.14931 -9.81006 -9.32685 -8.16753 -6.34209 0.11758 0.33314 1.03563 1.10653 1.45544 1.46484 1.56030 2.05632 2.28911 2.34539 2.54513 3.13595 3.74054 3.83089 4.29065 4.50223 4.50892 4.58244 4.76026 5.02591 5.07707 5.24081 5.31661 5.42658 5.47491 5.57896 5.76423 5.85585 5.94367 6.14985 6.71081 6.82987 7.26379 7.42155 8.88477 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.003973 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.658293 B = 7046.156079 C = 7843.454183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.576 3.424 15 O -0.563 6.563 16 C -0.016 4.016 17 C -0.097 4.097 18 C -0.108 4.108 19 Cl -0.023 7.023 20 C 0.104 3.896 21 Cl 0.021 6.979 22 N -0.507 5.507 23 H 0.440 0.560 24 H 0.029 0.971 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.265 0.735 30 H 0.399 0.601 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 6.613 -16.736 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.363 3.637 15 O -0.443 6.443 16 C -0.130 4.130 17 C -0.124 4.124 18 C -0.143 4.143 19 Cl 0.006 6.994 20 C -0.042 4.042 21 Cl 0.049 6.951 22 N -0.109 5.109 23 H 0.282 0.718 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.234 0.766 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.043 6.497 -16.070 18.052 hybrid contribution 1.456 -0.138 -0.062 1.464 sum -3.587 6.359 -16.132 17.707 Atomic orbital electron populations 1.21706 0.96920 0.99340 1.00404 1.21798 0.93787 0.98951 1.01514 1.18462 0.93837 0.89276 0.80811 0.97636 1.21538 0.91225 1.39190 1.06844 0.90897 1.25708 1.03056 0.94337 0.95048 1.70033 1.37035 1.38133 1.09811 0.85413 0.79368 0.77348 0.78599 1.20576 1.21126 1.18431 1.46158 1.14720 1.55727 1.18003 1.17148 0.82463 0.78476 0.85650 1.90842 1.52429 1.61177 1.39836 1.20317 0.94029 1.10786 0.87918 1.21228 0.97175 0.99209 0.94781 1.19596 0.91277 1.08778 0.94615 1.98338 1.49133 1.74680 1.77259 1.20631 0.92309 1.04095 0.87124 1.98430 1.89258 1.92098 1.15307 1.41851 1.16603 1.43048 1.09445 0.71789 0.95221 0.93779 0.93549 0.93927 0.90800 0.92546 0.76613 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.52 16 3 C 0.28 13.47 2.24 44.24 0.10 13.57 16 4 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 5 C -0.55 -27.45 8.73 25.60 0.22 -27.22 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.99 5.29 84.65 0.45 1.43 16 8 N -0.91 -50.25 11.29 21.45 0.24 -50.01 16 9 Si 0.97 40.35 29.54 68.60 2.03 42.38 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 13 N -0.70 -26.45 5.02 -450.19 -2.26 -28.71 16 14 C 0.58 21.54 6.35 86.41 0.55 22.09 16 15 O -0.56 -25.45 14.01 -4.41 -0.06 -25.51 16 16 C -0.02 -0.46 7.06 40.30 0.28 -0.17 16 17 C -0.10 -2.65 10.64 22.58 0.24 -2.41 16 18 C -0.11 -2.55 6.66 22.06 0.15 -2.40 16 19 Cl -0.02 -0.47 29.12 -2.72 -0.08 -0.55 16 20 C 0.10 2.21 7.75 83.52 0.65 2.86 16 21 Cl 0.02 0.35 29.13 -2.72 -0.08 0.27 16 22 N -0.51 -11.02 6.01 -174.51 -1.05 -12.07 16 23 H 0.44 7.25 8.19 -92.71 -0.76 6.49 16 24 H 0.03 1.37 7.84 -2.38 -0.02 1.36 16 25 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 3.90 5.95 -2.38 -0.01 3.89 16 29 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 30 H 0.40 12.27 7.67 -92.71 -0.71 11.56 16 31 H 0.17 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -60.41 297.37 1.89 -58.52 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.27 Total: 18.29 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 3.42 Total: -2.61 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -3.06 Total: -90.78 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.06 Total: -25.51 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.28 kcal Total: -60.41 1.89 -58.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183914479.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.472 kcal (2) G-P(sol) polarization free energy of solvation -60.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds