Wall clock time and date at job start Tue Mar 31 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47690 * 270.00301 * 3 2 1 5 5 H 1.48503 * 109.46816 * 30.00336 * 3 2 1 6 6 H 1.48502 * 109.47104 * 149.99737 * 3 2 1 7 7 C 1.37878 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99698 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47147 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47302 * 180.02562 * 10 9 7 12 12 C 1.81395 * 102.99873 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47086 * 180.02562 * 12 11 10 14 14 C 1.38258 * 119.99991 * 270.21358 * 13 12 11 15 15 C 1.38211 * 119.99779 * 180.25721 * 14 13 12 16 16 C 1.38256 * 120.00062 * 359.50247 * 15 14 13 17 17 C 1.38215 * 120.00141 * 0.28711 * 16 15 14 18 18 C 1.50700 * 120.00244 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.46773 * 359.97438 * 18 17 16 20 20 F 1.39897 * 109.47450 * 119.99670 * 18 17 16 21 21 F 1.39898 * 109.46871 * 239.99865 * 18 17 16 22 22 C 1.38211 * 119.99838 * 89.99706 * 13 12 11 23 23 H 0.97003 * 120.00261 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46995 * 60.00661 * 9 7 2 25 25 H 1.08999 * 109.47415 * 300.00370 * 9 7 2 26 26 H 1.09008 * 109.46602 * 60.00459 * 10 9 7 27 27 H 1.08999 * 109.47297 * 300.00482 * 10 9 7 28 28 H 1.08997 * 109.47596 * 59.99988 * 12 11 10 29 29 H 1.09001 * 109.47383 * 299.99564 * 12 11 10 30 30 H 1.07998 * 119.99837 * 0.03764 * 14 13 12 31 31 H 1.08002 * 120.00200 * 179.78851 * 15 14 13 32 32 H 1.07999 * 120.00077 * 180.25932 * 16 15 14 33 33 H 1.08001 * 120.00363 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0026 12 6 2.6649 -6.4701 -0.0033 13 6 2.0633 -7.8519 -0.0046 14 6 1.7829 -8.4850 1.1921 15 6 1.2361 -9.7543 1.1909 16 6 0.9600 -10.3869 -0.0070 17 6 1.2362 -9.7523 -1.2034 18 6 0.9358 -10.4421 -2.5092 19 9 0.3871 -11.7036 -2.2547 20 9 0.0236 -9.6756 -3.2424 21 9 2.1182 -10.5876 -3.2426 22 6 1.7877 -8.4845 -1.2022 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8725 -3.6047 0.8878 27 1 2.8713 -3.6039 -0.8922 28 1 3.2811 -6.3427 0.8867 29 1 3.2810 -6.3418 -0.8933 30 1 1.9945 -7.9890 2.1279 31 1 1.0203 -10.2503 2.1257 32 1 0.5288 -11.3771 -0.0080 33 1 2.0038 -7.9887 -2.1370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190869665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:37 Heat of formation + Delta-G solvation = -147.076420 kcal Electronic energy + Delta-G solvation = -19497.719471 eV Core-core repulsion = 15812.841651 eV Total energy + Delta-G solvation = -3684.877820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.065 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.34607 -47.88120 -47.78512 -39.70796 -33.72212 -33.42316 -31.98868 -30.90178 -27.48572 -26.26629 -25.24789 -22.68805 -21.82125 -20.95323 -18.65982 -18.55855 -18.33100 -16.55421 -16.53241 -15.70645 -15.63544 -14.80460 -14.69409 -14.60106 -14.52269 -14.24835 -14.07117 -13.96078 -13.88331 -13.84333 -13.38680 -12.83615 -12.77807 -12.74588 -12.11947 -11.59339 -11.50122 -11.44802 -11.04980 -10.64617 -10.23584 -9.81666 -9.69791 -9.44880 -9.11622 -8.91235 -8.44937 -7.23407 -6.08658 -4.13639 0.64867 0.88399 2.16676 2.45677 3.12023 3.27299 3.33887 3.35417 3.36689 3.50548 3.80650 4.23697 4.39207 4.41687 4.54566 4.73583 4.91847 4.98504 5.17433 5.26907 5.38902 5.51425 5.64773 5.86813 5.93740 6.00624 6.12233 6.19303 6.47873 6.67797 7.53046 7.61227 7.87160 8.24007 8.91341 9.50492 11.02072 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.002801 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.116691 B = 9993.574497 C =10393.863373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.061 4.061 11 S -0.273 6.273 12 C -0.058 4.058 13 C -0.060 4.060 14 C -0.071 4.071 15 C -0.120 4.120 16 C -0.076 4.076 17 C -0.184 4.184 18 C 0.509 3.491 19 F -0.179 7.179 20 F -0.174 7.174 21 F -0.178 7.178 22 C -0.054 4.054 23 H 0.263 0.737 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -23.040 -0.276 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.209 4.209 11 S -0.043 6.043 12 C -0.205 4.205 13 C -0.062 4.062 14 C -0.091 4.091 15 C -0.138 4.138 16 C -0.095 4.095 17 C -0.185 4.185 18 C 0.455 3.545 19 F -0.161 7.161 20 F -0.155 7.155 21 F -0.159 7.159 22 C -0.074 4.074 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.824 -23.073 -0.314 23.248 hybrid contribution 1.643 1.056 -0.277 1.973 sum 4.467 -22.017 -0.591 22.473 Atomic orbital electron populations 1.69969 1.06085 1.26923 1.49871 1.25015 0.94900 0.99328 0.95007 0.86516 0.79745 0.83083 0.78202 1.20527 1.21080 1.19815 1.21086 0.92993 0.90232 1.51928 0.92441 1.18906 0.93403 0.89220 0.98586 1.23738 1.01484 0.92430 1.03232 1.87243 1.16235 1.02742 1.98038 1.22267 0.99542 0.92933 1.05763 1.19295 0.99479 0.94488 0.92896 1.21343 0.95273 0.94333 0.98108 1.21133 0.99581 0.95166 0.97890 1.20997 0.97266 1.00082 0.91130 1.19897 1.08975 0.97531 0.92143 1.18291 0.74399 0.76607 0.85179 1.93153 1.86129 1.42668 1.94114 1.93244 1.67654 1.75266 1.79357 1.93215 1.47486 1.95727 1.79487 1.20780 0.95088 0.92398 0.99089 0.92734 0.95511 0.95514 0.91276 0.91274 0.89118 0.89256 0.84669 0.84635 0.84537 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 10 C -0.06 -1.24 5.88 37.16 0.22 -1.02 16 11 S -0.27 -4.83 21.72 -107.50 -2.33 -7.17 16 12 C -0.06 -0.73 6.07 36.01 0.22 -0.52 16 13 C -0.06 -0.70 5.14 -104.62 -0.54 -1.24 16 14 C -0.07 -0.71 9.70 -39.58 -0.38 -1.09 16 15 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 16 C -0.08 -0.70 9.43 -39.58 -0.37 -1.07 16 17 C -0.18 -1.98 5.37 -104.62 -0.56 -2.54 16 18 C 0.51 5.51 3.32 36.01 0.12 5.63 16 19 F -0.18 -1.84 15.97 2.25 0.04 -1.80 16 20 F -0.17 -2.10 17.24 2.25 0.04 -2.07 16 21 F -0.18 -1.97 17.24 2.25 0.04 -1.93 16 22 C -0.05 -0.62 9.25 -39.58 -0.37 -0.98 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 28 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.09 1.05 8.08 -51.92 -0.42 0.63 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.14 0.99 7.16 -52.49 -0.38 0.62 16 33 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 316.19 15.07 4.76 4.76 Total: -1.00 -29.97 316.19 -8.07 -38.04 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -3.72 Total: -3.66 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.61 Total: -16.62 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.75 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.33 Total: -7.17 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.97 -8.07 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190869665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.037 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds