Wall clock time and date at job start Tue Mar 31 2020 06:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47690 * 270.00301 * 3 2 1 5 5 H 1.48503 * 109.46816 * 30.00336 * 3 2 1 6 6 H 1.48502 * 109.47104 * 149.99737 * 3 2 1 7 7 C 1.37878 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99698 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47147 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47302 * 180.02562 * 10 9 7 12 12 C 1.81395 * 102.99873 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47086 * 180.02562 * 12 11 10 14 14 C 1.38258 * 119.99991 * 270.21358 * 13 12 11 15 15 C 1.38211 * 119.99779 * 180.25721 * 14 13 12 16 16 C 1.38256 * 120.00062 * 359.50247 * 15 14 13 17 17 C 1.38215 * 120.00141 * 0.28711 * 16 15 14 18 18 C 1.50700 * 120.00244 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.46773 * 359.97438 * 18 17 16 20 20 F 1.39897 * 109.47450 * 119.99670 * 18 17 16 21 21 F 1.39898 * 109.46871 * 239.99865 * 18 17 16 22 22 C 1.38211 * 119.99838 * 89.99706 * 13 12 11 23 23 H 0.97003 * 120.00261 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46995 * 60.00661 * 9 7 2 25 25 H 1.08999 * 109.47415 * 300.00370 * 9 7 2 26 26 H 1.09008 * 109.46602 * 60.00459 * 10 9 7 27 27 H 1.08999 * 109.47297 * 300.00482 * 10 9 7 28 28 H 1.08997 * 109.47596 * 59.99988 * 12 11 10 29 29 H 1.09001 * 109.47383 * 299.99564 * 12 11 10 30 30 H 1.07998 * 119.99837 * 0.03764 * 14 13 12 31 31 H 1.08002 * 120.00200 * 179.78851 * 15 14 13 32 32 H 1.07999 * 120.00077 * 180.25932 * 16 15 14 33 33 H 1.08001 * 120.00363 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0026 12 6 2.6649 -6.4701 -0.0033 13 6 2.0633 -7.8519 -0.0046 14 6 1.7829 -8.4850 1.1921 15 6 1.2361 -9.7543 1.1909 16 6 0.9600 -10.3869 -0.0070 17 6 1.2362 -9.7523 -1.2034 18 6 0.9358 -10.4421 -2.5092 19 9 0.3871 -11.7036 -2.2547 20 9 0.0236 -9.6756 -3.2424 21 9 2.1182 -10.5876 -3.2426 22 6 1.7877 -8.4845 -1.2022 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8725 -3.6047 0.8878 27 1 2.8713 -3.6039 -0.8922 28 1 3.2811 -6.3427 0.8867 29 1 3.2810 -6.3418 -0.8933 30 1 1.9945 -7.9890 2.1279 31 1 1.0203 -10.2503 2.1257 32 1 0.5288 -11.3771 -0.0080 33 1 2.0038 -7.9887 -2.1370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190869665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:36 Heat of formation + Delta-G solvation = -161.254462 kcal Electronic energy + Delta-G solvation = -19498.334277 eV Core-core repulsion = 15812.841651 eV Total energy + Delta-G solvation = -3685.492626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.21176 -48.72945 -48.68006 -40.48907 -35.77623 -34.28120 -32.90496 -32.75201 -28.46013 -27.24114 -27.07367 -23.55911 -23.20370 -22.27279 -19.53327 -19.41094 -19.18382 -18.67216 -17.30670 -17.01693 -16.52113 -16.51496 -15.65757 -15.61558 -15.56245 -15.39181 -15.14607 -15.11799 -14.90760 -14.84041 -14.44996 -14.07688 -13.83099 -13.69990 -13.60166 -13.34462 -12.92177 -12.55457 -12.30956 -12.25172 -12.12352 -11.68219 -11.40736 -10.85992 -10.61056 -10.22011 -9.84096 -8.65100 -8.23331 -6.37099 -0.17897 0.04784 0.97943 1.41461 1.42799 1.53999 1.61450 1.74545 2.40352 2.54549 2.67249 2.97127 3.10038 3.38156 3.54854 3.77752 3.95863 4.13147 4.21024 4.27434 4.38410 4.41961 4.53286 4.68358 4.85455 4.88855 5.10891 5.27099 5.38211 5.39596 5.49588 5.73647 5.74036 6.10657 6.77671 7.32647 8.88392 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.002801 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.116691 B = 9993.574497 C =10393.863373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.044 3.956 10 C -0.050 4.050 11 S -0.310 6.310 12 C -0.037 4.037 13 C -0.079 4.079 14 C -0.072 4.072 15 C -0.114 4.114 16 C -0.072 4.072 17 C -0.196 4.196 18 C 0.511 3.489 19 F -0.175 7.175 20 F -0.184 7.184 21 F -0.181 7.181 22 C -0.065 4.065 23 H 0.265 0.735 24 H -0.006 1.006 25 H -0.003 1.003 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -24.178 0.629 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.005 3.995 10 C -0.198 4.198 11 S -0.080 6.080 12 C -0.184 4.184 13 C -0.081 4.081 14 C -0.092 4.092 15 C -0.131 4.131 16 C -0.090 4.090 17 C -0.197 4.197 18 C 0.457 3.543 19 F -0.156 7.156 20 F -0.166 7.166 21 F -0.162 7.162 22 C -0.086 4.086 23 H 0.074 0.926 24 H 0.012 0.988 25 H 0.015 0.985 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.168 0.832 31 H 0.186 0.814 32 H 0.175 0.825 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.267 -24.212 0.589 24.592 hybrid contribution 1.162 1.222 -0.554 1.775 sum 5.429 -22.990 0.036 23.623 Atomic orbital electron populations 1.70116 1.08007 1.28057 1.50997 1.26033 0.95776 1.03582 0.94383 0.85347 0.78652 0.77889 0.78551 1.19740 1.20793 1.18319 1.21562 0.93746 0.91359 1.51511 0.91347 1.18677 0.93738 0.91547 0.95507 1.23345 1.00100 0.92269 1.04079 1.87295 1.19339 1.03193 1.98186 1.22290 0.97492 0.91426 1.07204 1.19266 1.01106 0.94026 0.93682 1.21627 0.94598 0.94950 0.98037 1.21510 0.98101 0.94514 0.98983 1.21346 0.96158 1.00832 0.90704 1.19973 1.09633 0.97511 0.92609 1.18321 0.74101 0.76673 0.85176 1.93157 1.86056 1.42326 1.94056 1.93222 1.68059 1.75616 1.79689 1.93207 1.47622 1.95745 1.79636 1.20842 0.95618 0.92978 0.99125 0.92582 0.98781 0.98508 0.90154 0.90527 0.87226 0.88309 0.83198 0.81369 0.82455 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.04 2.32 4.98 29.85 0.15 2.47 16 10 C -0.05 -2.04 5.88 71.98 0.42 -1.61 16 11 S -0.31 -10.99 21.72 -56.49 -1.23 -12.22 16 12 C -0.04 -0.89 6.07 71.24 0.43 -0.45 16 13 C -0.08 -1.72 5.14 -19.86 -0.10 -1.82 16 14 C -0.07 -1.26 9.70 22.27 0.22 -1.04 16 15 C -0.11 -1.57 10.05 22.27 0.22 -1.34 16 16 C -0.07 -1.12 9.43 22.27 0.21 -0.91 16 17 C -0.20 -3.93 5.37 -19.86 -0.11 -4.04 16 18 C 0.51 10.58 3.32 71.24 0.24 10.82 16 19 F -0.17 -3.31 15.97 44.97 0.72 -2.59 16 20 F -0.18 -4.41 17.24 44.97 0.78 -3.64 16 21 F -0.18 -3.88 17.24 44.97 0.78 -3.10 16 22 C -0.07 -1.45 9.25 22.27 0.21 -1.24 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 24 H -0.01 -0.37 8.14 -2.38 -0.02 -0.38 16 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.11 2.21 8.09 -2.39 -0.02 2.19 16 29 H 0.10 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.16 1.77 7.16 -2.91 -0.02 1.75 16 33 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -65.97 316.19 7.06 -58.91 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.12 Total: 2.54 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 2.58 Total: -28.84 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 2.27 Total: -9.33 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -10.99 SS G_CDS: -1.23 Total: -12.22 kcal Total: -65.97 7.06 -58.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190869665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.343 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds