Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48495 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00066 * 3 2 1 6 6 H 1.48500 * 109.47389 * 60.00047 * 3 2 1 7 7 C 1.37870 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99717 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47353 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47445 * 179.97438 * 10 9 7 12 12 O 1.42096 * 108.57743 * 294.48510 * 11 10 9 13 13 O 1.42105 * 108.57596 * 65.51091 * 11 10 9 14 14 C 1.81393 * 101.92117 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.47286 * 180.02562 * 14 11 10 16 16 C 1.38261 * 119.96104 * 269.72429 * 15 14 11 17 17 C 1.38215 * 120.06664 * 179.76277 * 16 15 14 18 18 C 1.38415 * 120.00265 * 0.50706 * 17 16 15 19 19 F 1.35094 * 120.03470 * 179.71912 * 18 17 16 20 20 C 1.38650 * 119.92710 * 359.74796 * 18 17 16 21 21 F 1.35105 * 120.03430 * 180.02562 * 20 18 17 22 22 C 1.38210 * 119.96511 * 89.99395 * 15 14 11 23 23 H 0.96999 * 120.00397 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47328 * 60.00039 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99849 * 9 7 2 26 26 H 1.09001 * 109.46962 * 59.99704 * 10 9 7 27 27 H 1.09004 * 109.46832 * 299.99868 * 10 9 7 28 28 H 1.09000 * 109.47386 * 299.99782 * 14 11 10 29 29 H 1.09002 * 109.47608 * 60.00113 * 14 11 10 30 30 H 1.07997 * 119.96478 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.00095 * 180.25415 * 17 16 15 32 32 H 1.08001 * 120.00200 * 359.96352 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 16 1.3385 -5.2330 0.0026 12 8 0.6282 -5.3451 1.2282 13 8 0.6291 -5.3468 -1.2235 14 6 2.6883 -6.4449 0.0033 15 6 2.1129 -7.8377 0.0033 16 6 1.8542 -8.4779 1.2012 17 6 1.3219 -9.7534 1.2038 18 6 1.0571 -10.3953 0.0065 19 9 0.5422 -11.6443 0.0083 20 6 1.3215 -9.7554 -1.1948 21 9 1.0634 -10.3797 -2.3647 22 6 1.8496 -8.4759 -1.1940 23 1 -0.4851 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8903 26 1 2.8714 -3.6038 0.8923 27 1 2.8727 -3.6046 -0.8878 28 1 3.3019 -6.3058 -0.8868 29 1 3.3019 -6.3049 0.8932 30 1 2.0643 -7.9790 2.1357 31 1 1.1164 -10.2509 2.1401 32 1 2.0557 -7.9762 -2.1290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190898046.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -145.890556 kcal Electronic energy + Delta-G solvation = -20150.657241 eV Core-core repulsion = 16453.458054 eV Total energy + Delta-G solvation = -3697.199187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.70514 -48.77857 -39.45460 -36.58432 -35.62237 -33.93692 -33.02501 -31.24208 -31.13398 -27.60421 -25.61525 -23.61160 -22.46769 -21.39756 -18.58635 -18.19600 -17.50995 -17.30704 -17.07104 -16.54619 -15.92503 -15.74340 -15.47501 -15.18435 -14.77294 -14.64169 -14.54438 -14.24149 -13.73036 -13.45931 -12.79684 -12.56443 -12.51884 -12.36996 -11.81220 -11.68959 -11.62075 -11.57824 -11.12647 -10.99083 -10.89483 -10.42769 -10.40260 -9.76997 -9.39996 -9.23421 -8.82935 -8.53565 -6.15401 -4.21651 0.06740 0.65352 0.74389 2.99865 3.10764 3.23144 3.30614 3.33410 3.44453 3.76542 3.99952 4.12145 4.24854 4.34168 4.36878 4.65589 4.75122 4.89004 5.13784 5.19856 5.40871 5.49787 5.54118 5.57117 5.60612 5.66297 5.92049 6.39182 6.40943 7.29412 7.34419 7.77151 8.12985 8.82224 9.43366 10.95438 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.044857 B = 0.003233 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.054132 B = 8658.354046 C = 8798.715030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.570 4.570 11 S 2.394 3.606 12 O -0.936 6.936 13 O -0.936 6.936 14 C -0.587 4.587 15 C -0.062 4.062 16 C -0.086 4.086 17 C -0.122 4.122 18 C 0.069 3.931 19 F -0.128 7.128 20 C 0.071 3.929 21 F -0.126 7.126 22 C -0.113 4.113 23 H 0.265 0.735 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 -18.296 1.294 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.703 4.703 11 S 2.578 3.422 12 O -0.933 6.933 13 O -0.933 6.933 14 C -0.711 4.711 15 C -0.064 4.064 16 C -0.105 4.105 17 C -0.141 4.141 18 C 0.049 3.951 19 F -0.106 7.106 20 C 0.051 3.949 21 F -0.104 7.104 22 C -0.132 4.132 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.033 -18.470 1.243 19.470 hybrid contribution 1.211 0.651 -0.264 1.400 sum 7.244 -17.818 0.979 19.260 Atomic orbital electron populations 1.69966 1.06116 1.27138 1.49433 1.25071 0.94977 0.99555 0.94877 0.86412 0.79893 0.83158 0.77801 1.19637 1.20785 1.20777 1.21044 0.93101 0.89702 1.52335 0.91942 1.19011 0.92720 0.90101 0.99293 1.30225 1.13389 1.16474 1.10165 1.09077 0.78456 0.78909 0.75719 1.93549 1.68519 1.85773 1.45485 1.93557 1.68586 1.85740 1.45463 1.29631 1.20403 1.08303 1.12721 1.18891 1.00093 0.94352 0.93022 1.21159 0.97038 0.93717 0.98553 1.21096 1.00395 0.95697 0.96903 1.17748 1.02054 0.81781 0.93546 1.91533 1.84365 1.37446 1.97268 1.17565 1.04085 0.92698 0.80568 1.91547 1.91916 1.81938 1.45003 1.21110 0.99368 0.92588 1.00150 0.92536 0.94564 0.94560 0.85988 0.85997 0.83734 0.83584 0.83161 0.83005 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.98 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.57 -9.72 5.74 37.16 0.21 -9.50 16 11 S 2.39 37.51 4.70 -107.50 -0.51 37.00 16 12 O -0.94 -17.51 18.10 -57.83 -1.05 -18.56 16 13 O -0.94 -17.89 18.10 -57.83 -1.05 -18.93 16 14 C -0.59 -5.73 5.93 36.01 0.21 -5.51 16 15 C -0.06 -0.69 5.14 -104.62 -0.54 -1.23 16 16 C -0.09 -0.85 9.70 -39.58 -0.38 -1.23 16 17 C -0.12 -1.16 10.02 -39.52 -0.40 -1.55 16 18 C 0.07 0.79 7.31 -39.36 -0.29 0.50 16 19 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 20 C 0.07 0.86 7.31 -39.36 -0.29 0.57 16 21 F -0.13 -1.61 17.18 2.25 0.04 -1.57 16 22 C -0.11 -1.29 9.68 -39.52 -0.38 -1.67 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.12 1.76 8.14 -51.92 -0.42 1.34 16 27 H 0.12 1.77 8.14 -51.92 -0.42 1.35 16 28 H 0.14 1.01 8.08 -51.92 -0.42 0.59 16 29 H 0.15 0.96 8.08 -51.92 -0.42 0.54 16 30 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -34.79 308.74 -7.89 -42.68 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -3.34 Total: -2.33 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -2.40 Total: -31.88 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.74 Total: -25.29 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -2.09 Total: -37.49 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 37.51 SS G_CDS: -0.51 Total: 37.00 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.79 -7.89 -42.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190898046.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.207 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds