Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48495 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00066 * 3 2 1 6 6 H 1.48500 * 109.47389 * 60.00047 * 3 2 1 7 7 C 1.37870 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99717 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47353 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47445 * 179.97438 * 10 9 7 12 12 O 1.42096 * 108.57743 * 294.48510 * 11 10 9 13 13 O 1.42105 * 108.57596 * 65.51091 * 11 10 9 14 14 C 1.81393 * 101.92117 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.47286 * 180.02562 * 14 11 10 16 16 C 1.38261 * 119.96104 * 269.72429 * 15 14 11 17 17 C 1.38215 * 120.06664 * 179.76277 * 16 15 14 18 18 C 1.38415 * 120.00265 * 0.50706 * 17 16 15 19 19 F 1.35094 * 120.03470 * 179.71912 * 18 17 16 20 20 C 1.38650 * 119.92710 * 359.74796 * 18 17 16 21 21 F 1.35105 * 120.03430 * 180.02562 * 20 18 17 22 22 C 1.38210 * 119.96511 * 89.99395 * 15 14 11 23 23 H 0.96999 * 120.00397 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47328 * 60.00039 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99849 * 9 7 2 26 26 H 1.09001 * 109.46962 * 59.99704 * 10 9 7 27 27 H 1.09004 * 109.46832 * 299.99868 * 10 9 7 28 28 H 1.09000 * 109.47386 * 299.99782 * 14 11 10 29 29 H 1.09002 * 109.47608 * 60.00113 * 14 11 10 30 30 H 1.07997 * 119.96478 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.00095 * 180.25415 * 17 16 15 32 32 H 1.08001 * 120.00200 * 359.96352 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 16 1.3385 -5.2330 0.0026 12 8 0.6282 -5.3451 1.2282 13 8 0.6291 -5.3468 -1.2235 14 6 2.6883 -6.4449 0.0033 15 6 2.1129 -7.8377 0.0033 16 6 1.8542 -8.4779 1.2012 17 6 1.3219 -9.7534 1.2038 18 6 1.0571 -10.3953 0.0065 19 9 0.5422 -11.6443 0.0083 20 6 1.3215 -9.7554 -1.1948 21 9 1.0634 -10.3797 -2.3647 22 6 1.8496 -8.4759 -1.1940 23 1 -0.4851 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8903 26 1 2.8714 -3.6038 0.8923 27 1 2.8727 -3.6046 -0.8878 28 1 3.3019 -6.3058 -0.8868 29 1 3.3019 -6.3049 0.8932 30 1 2.0643 -7.9790 2.1357 31 1 1.1164 -10.2509 2.1401 32 1 2.0557 -7.9762 -2.1290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190898046.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -170.239120 kcal Electronic energy + Delta-G solvation = -20151.713074 eV Core-core repulsion = 16453.458054 eV Total energy + Delta-G solvation = -3698.255020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.60512 -49.68701 -40.25571 -37.92563 -36.95919 -35.83169 -33.86372 -33.07953 -31.93573 -28.54512 -27.42206 -24.41705 -23.74879 -22.79309 -19.82827 -19.09588 -18.81799 -18.36488 -18.17813 -17.55661 -17.25631 -16.98717 -16.79154 -16.41706 -16.10517 -15.64265 -15.49015 -15.12225 -15.05897 -14.48889 -14.41120 -13.68498 -13.61214 -13.36707 -13.19245 -13.03003 -12.96552 -12.90760 -12.70292 -12.39884 -12.17699 -12.04380 -11.97696 -11.60794 -10.96682 -10.63111 -10.18793 -9.73469 -8.23359 -6.37500 -1.09194 -0.18717 -0.08930 1.43130 1.43587 1.56793 1.93811 2.19781 2.39914 2.60741 2.76822 3.09587 3.11135 3.19554 3.29425 3.49322 3.86866 3.97242 4.07361 4.12289 4.27206 4.44874 4.64631 4.75400 4.77826 4.87313 4.92196 5.12443 5.35360 5.35782 5.59259 5.72594 6.09246 6.78388 7.33078 8.89078 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.044857 B = 0.003233 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.054132 B = 8658.354046 C = 8798.715030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.575 4.575 11 S 2.393 3.607 12 O -0.977 6.977 13 O -0.985 6.985 14 C -0.544 4.544 15 C -0.082 4.082 16 C -0.083 4.083 17 C -0.117 4.117 18 C 0.059 3.941 19 F -0.134 7.134 20 C 0.047 3.953 21 F -0.137 7.137 22 C -0.119 4.119 23 H 0.266 0.734 24 H 0.001 0.999 25 H 0.004 0.996 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.184 0.816 29 H 0.194 0.806 30 H 0.179 0.821 31 H 0.182 0.818 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.229 -18.924 2.235 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.099 0.901 9 C -0.022 4.022 10 C -0.706 4.706 11 S 2.583 3.417 12 O -0.975 6.975 13 O -0.982 6.982 14 C -0.674 4.674 15 C -0.083 4.083 16 C -0.102 4.102 17 C -0.135 4.135 18 C 0.039 3.961 19 F -0.113 7.113 20 C 0.027 3.973 21 F -0.116 7.116 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.022 0.978 26 H 0.171 0.829 27 H 0.168 0.832 28 H 0.201 0.799 29 H 0.211 0.789 30 H 0.196 0.804 31 H 0.199 0.801 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.114 -19.026 2.183 21.209 hybrid contribution 0.262 0.661 -0.538 0.892 sum 9.376 -18.365 1.645 20.685 Atomic orbital electron populations 1.70127 1.08207 1.28143 1.51206 1.26155 0.95819 1.04029 0.94562 0.85261 0.79345 0.78004 0.77602 1.17511 1.20700 1.20560 1.21630 0.94196 0.90757 1.51001 0.90089 1.18836 0.93856 0.93321 0.96140 1.30121 1.12266 1.15128 1.13115 1.08658 0.79681 0.79347 0.74011 1.93494 1.71061 1.86399 1.46510 1.93499 1.71340 1.86446 1.46910 1.29255 1.16879 1.03996 1.17249 1.19116 1.01044 0.94864 0.93308 1.21607 0.95560 0.93690 0.99309 1.21457 0.99178 0.95636 0.97276 1.18043 1.02226 0.81711 0.94151 1.91515 1.84522 1.37916 1.97329 1.17835 1.05435 0.93429 0.80578 1.91512 1.92184 1.82203 1.45654 1.21344 0.98969 0.92393 1.01122 0.92552 0.98069 0.97813 0.82875 0.83227 0.79862 0.78902 0.80392 0.80094 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.29 21.44 0.28 -56.65 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 3 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -28.84 9.11 25.60 0.23 -28.60 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.02 0.85 4.98 29.85 0.15 1.00 16 10 C -0.58 -18.76 5.74 71.98 0.41 -18.35 16 11 S 2.39 72.11 4.70 -56.49 -0.27 71.84 16 12 O -0.98 -36.33 18.10 -127.37 -2.31 -38.63 16 13 O -0.98 -38.19 18.10 -127.37 -2.30 -40.49 16 14 C -0.54 -7.99 5.93 71.24 0.42 -7.57 16 15 C -0.08 -1.52 5.14 -19.87 -0.10 -1.62 16 16 C -0.08 -1.32 9.70 22.27 0.22 -1.10 16 17 C -0.12 -1.88 10.02 22.31 0.22 -1.65 16 18 C 0.06 1.26 7.31 22.41 0.16 1.43 16 19 F -0.13 -3.06 17.18 44.97 0.77 -2.29 16 20 C 0.05 1.10 7.31 22.41 0.16 1.27 16 21 F -0.14 -3.51 17.18 44.97 0.77 -2.74 16 22 C -0.12 -2.48 9.68 22.31 0.22 -2.26 16 23 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 26 H 0.15 3.93 8.14 -2.39 -0.02 3.91 16 27 H 0.15 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.18 1.45 8.08 -2.39 -0.02 1.43 16 29 H 0.19 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -81.30 308.74 2.68 -78.62 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.14 Total: 3.31 kcal Atomic # 6 Polarization: -59.99 SS G_CDS: 2.56 Total: -57.43 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -74.51 SS G_CDS: -4.61 Total: -79.12 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 1.55 Total: -5.03 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 72.11 SS G_CDS: -0.27 Total: 71.84 kcal Total: -81.30 2.68 -78.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190898046.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.619 kcal (2) G-P(sol) polarization free energy of solvation -81.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds