Wall clock time and date at job start Tue Mar 31 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47568 * 2 1 4 4 C 1.50700 * 109.47167 * 120.00427 * 2 1 3 5 5 H 1.07994 * 120.00311 * 119.99303 * 4 2 1 6 6 C 1.37876 * 119.99668 * 299.99836 * 4 2 1 7 7 N 1.31514 * 120.00148 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00161 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47246 * 89.99922 * 8 6 4 10 10 H 1.48501 * 109.47119 * 210.00472 * 8 6 4 11 11 H 1.48499 * 109.46964 * 329.99967 * 8 6 4 12 12 N 1.46505 * 109.46911 * 240.00050 * 2 1 3 13 13 C 1.34770 * 120.00315 * 84.72760 * 12 2 1 14 14 O 1.21723 * 119.99678 * 354.35508 * 13 12 2 15 15 C 1.46535 * 120.00640 * 174.34978 * 13 12 2 16 16 C 1.37967 * 126.22002 * 4.25091 * 15 13 12 17 17 C 1.39786 * 107.12980 * 179.97438 * 16 15 13 18 18 Cl 1.73596 * 126.06249 * 179.97438 * 17 16 15 19 19 C 1.35729 * 107.87447 * 359.97438 * 17 16 15 20 20 Cl 1.73600 * 125.58100 * 180.02562 * 19 17 16 21 21 N 1.35657 * 108.82931 * 359.73353 * 19 17 16 22 22 C 1.46499 * 125.69680 * 180.30262 * 21 19 17 23 23 H 1.09002 * 109.47024 * 59.99755 * 1 2 3 24 24 H 1.09000 * 109.47244 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46797 * 300.00208 * 1 2 3 26 26 H 0.96995 * 120.00233 * 179.97438 * 7 6 4 27 27 H 0.97004 * 120.00116 * 265.00216 * 12 2 1 28 28 H 1.08000 * 126.43289 * 0.02562 * 16 15 13 29 29 H 1.08994 * 109.47305 * 264.44747 * 22 21 19 30 30 H 1.09004 * 109.47072 * 24.44465 * 22 21 19 31 31 H 1.09002 * 109.47716 * 144.44385 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6248 1.2789 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1418 -0.0197 -2.3585 14 8 1.7520 1.1304 -2.4417 15 6 2.7455 -0.6746 -3.5221 16 6 3.1535 -1.9905 -3.5965 17 6 3.6675 -2.1902 -4.8810 18 17 4.3191 -3.6747 -5.5016 19 6 3.5667 -1.0175 -5.5570 20 17 4.0704 -0.7503 -7.1967 21 7 3.0021 -0.0903 -4.7435 22 6 2.7161 1.3010 -5.1023 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.9032 -0.5281 4.4375 27 1 2.2490 -1.6318 -1.1527 28 1 3.0874 -2.7279 -2.8102 29 1 3.5362 1.9377 -4.7705 30 1 2.6076 1.3823 -6.1839 31 1 1.7917 1.6181 -4.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194712132.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:38 Heat of formation + Delta-G solvation = -16.793982 kcal Electronic energy + Delta-G solvation = -18460.631333 eV Core-core repulsion = 15215.242824 eV Total energy + Delta-G solvation = -3245.388509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.69410 -40.25718 -37.91048 -37.53773 -36.86749 -34.63087 -33.87036 -32.14618 -29.85843 -27.65921 -27.20374 -24.62121 -22.61218 -21.65758 -21.02575 -19.55394 -18.46096 -17.43885 -17.26075 -17.04474 -16.31138 -15.67794 -15.46792 -15.25355 -14.86775 -14.73296 -14.45912 -14.14999 -14.09746 -13.69917 -13.31716 -13.22760 -12.94853 -12.76032 -12.48745 -12.43426 -12.12495 -11.98497 -11.60222 -11.27909 -11.01335 -10.85081 -10.03425 -9.91174 -9.32858 -8.35302 -6.41876 0.10185 0.31232 0.99183 1.08934 1.31070 1.38901 1.47542 1.74370 2.20878 2.28605 2.46405 3.01083 3.58582 3.69640 3.91177 4.24712 4.36981 4.45889 4.52532 4.58288 4.65090 4.71711 4.98749 5.07927 5.32517 5.41970 5.43103 5.56587 5.59826 6.13502 6.59318 6.75143 7.14548 7.30433 8.79771 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.004076 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.698512 B = 6867.252932 C = 7649.435269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.247 3.753 3 H 0.029 0.971 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.933 5.933 8 Si 0.938 3.062 9 H -0.260 1.260 10 H -0.294 1.294 11 H -0.259 1.259 12 N -0.683 5.683 13 C 0.582 3.418 14 O -0.582 6.582 15 C -0.028 4.028 16 C -0.113 4.113 17 C -0.108 4.108 18 Cl -0.023 7.023 19 C 0.091 3.909 20 Cl 0.019 6.981 21 N -0.398 5.398 22 C 0.061 3.939 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.270 0.730 27 H 0.410 0.590 28 H 0.180 0.820 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -0.807 -21.150 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.143 3.857 3 H 0.047 0.953 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.572 5.572 8 Si 0.765 3.235 9 H -0.186 1.186 10 H -0.222 1.222 11 H -0.183 1.183 12 N -0.331 5.331 13 C 0.369 3.631 14 O -0.465 6.465 15 C -0.142 4.142 16 C -0.139 4.139 17 C -0.142 4.142 18 Cl 0.005 6.995 19 C -0.054 4.054 20 Cl 0.047 6.953 21 N -0.073 5.073 22 C -0.078 4.078 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.246 0.754 28 H 0.197 0.803 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.712 0.283 -21.254 21.325 hybrid contribution -0.107 0.084 0.391 0.414 sum 1.605 0.367 -20.863 20.928 Atomic orbital electron populations 1.22359 0.97567 1.01876 0.99666 1.18839 0.91387 0.93190 0.82303 0.95312 1.21225 1.32496 1.13755 0.89740 0.92244 1.25528 0.96777 0.99301 0.95294 1.69971 1.46613 1.41883 0.98684 0.86024 0.79781 0.80393 0.77289 1.18600 1.22190 1.18335 1.45705 1.64678 1.14499 1.08228 1.17029 0.78440 0.85323 0.82319 1.90746 1.52466 1.18817 1.84475 1.19938 1.12952 0.93714 0.87646 1.21477 1.01203 0.94459 0.96810 1.19619 1.11269 0.88358 0.94987 1.98339 1.84533 1.29921 1.86657 1.20732 1.07129 0.89599 0.87916 1.98403 1.88695 1.96539 1.11631 1.43896 1.43620 1.11117 1.08675 1.22540 1.04798 0.76628 1.03880 0.93239 0.91589 0.93941 0.92049 0.75378 0.80296 0.89136 0.86916 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.50 8.96 71.98 0.65 -5.85 16 2 C 0.25 11.18 2.11 44.25 0.09 11.27 16 3 H 0.03 1.44 6.73 -2.39 -0.02 1.42 16 4 C -0.53 -28.06 9.31 25.60 0.24 -27.82 16 5 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 6 C 0.03 1.70 5.45 84.65 0.46 2.16 16 7 N -0.93 -54.72 13.96 21.45 0.30 -54.42 16 8 Si 0.94 43.18 24.37 68.60 1.67 44.85 16 9 H -0.26 -11.28 6.87 99.48 0.68 -10.60 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.26 -11.68 6.53 99.48 0.65 -11.03 16 12 N -0.68 -25.67 5.05 -450.19 -2.27 -27.95 16 13 C 0.58 20.89 7.73 86.41 0.67 21.55 16 14 O -0.58 -23.72 14.41 -4.42 -0.06 -23.79 16 15 C -0.03 -0.82 6.89 40.30 0.28 -0.55 16 16 C -0.11 -2.88 10.34 22.58 0.23 -2.65 16 17 C -0.11 -2.59 6.66 22.06 0.15 -2.45 16 18 Cl -0.02 -0.49 29.12 -2.72 -0.08 -0.57 16 19 C 0.09 2.12 7.39 83.52 0.62 2.74 16 20 Cl 0.02 0.34 28.38 -2.72 -0.08 0.27 16 21 N -0.40 -10.12 3.17 -522.95 -1.66 -11.77 16 22 C 0.06 1.27 10.34 127.77 1.32 2.59 16 23 H 0.05 1.92 8.04 -2.39 -0.02 1.91 16 24 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.04 1.80 3.27 -2.39 -0.01 1.80 16 26 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.41 13.52 7.43 -92.71 -0.69 12.83 16 28 H 0.18 3.87 7.44 -2.91 -0.02 3.85 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 1.66 7.58 -2.38 -0.02 1.64 16 31 H 0.10 2.36 6.57 -2.39 -0.02 2.35 16 Total: -1.00 -62.23 293.78 2.94 -59.29 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.42 Total: 13.10 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 4.70 Total: 0.99 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -3.63 Total: -94.14 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.79 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.67 Total: 44.85 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.30 kcal Total: -62.23 2.94 -59.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194712132.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.494 kcal (2) G-P(sol) polarization free energy of solvation -62.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds