Wall clock time and date at job start Tue Mar 31 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48501 * 109.47425 * 240.00756 * 3 2 1 5 5 H 1.48506 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46814 * 120.00546 * 3 2 1 7 7 C 1.38645 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00201 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00492 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00487 * 174.59710 * 9 7 2 11 11 C 1.38957 * 120.03631 * 173.81715 * 10 9 7 12 12 C 1.38126 * 120.07651 * 179.72143 * 11 10 9 13 13 C 1.38195 * 120.13813 * 0.55522 * 12 11 10 14 14 C 1.38936 * 120.06938 * 359.71765 * 13 12 11 15 15 N 1.39836 * 120.04275 * 180.02562 * 14 13 12 16 16 C 1.34784 * 119.99907 * 326.27972 * 15 14 13 17 17 O 1.21696 * 119.99662 * 354.78545 * 16 15 14 18 18 C 1.46645 * 119.99987 * 174.78563 * 16 15 14 19 19 C 1.35678 * 126.13153 * 179.70964 * 18 16 15 20 20 N 1.30938 * 114.18958 * 179.85234 * 19 18 16 21 21 C 1.29430 * 117.36285 * 0.45534 * 20 19 18 22 22 S 1.70950 * 110.39643 * 359.75083 * 21 20 19 23 23 C 1.38728 * 120.02982 * 354.09190 * 10 9 7 24 24 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.95969 * 359.97438 * 11 10 9 26 26 H 1.08002 * 119.92835 * 180.27371 * 12 11 10 27 27 H 1.08008 * 119.96631 * 179.74815 * 13 12 11 28 28 H 0.96995 * 120.00479 * 146.27493 * 15 14 13 29 29 H 1.08004 * 122.90828 * 0.02562 * 19 18 16 30 30 H 1.08003 * 124.80398 * 179.77957 * 21 20 19 31 31 H 1.07995 * 120.07434 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6962 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0692 -3.5042 -0.1150 11 6 1.4553 -4.7448 0.0068 12 6 2.2010 -5.9011 -0.1152 13 6 3.5613 -5.8282 -0.3472 14 6 4.1823 -4.5909 -0.4643 15 7 5.5587 -4.5178 -0.6996 16 6 6.3825 -5.4463 -0.1742 17 8 5.9422 -6.2923 0.5817 18 6 7.8091 -5.4369 -0.5133 19 6 8.7463 -6.3041 -0.0545 20 7 9.9527 -6.0821 -0.5123 21 6 10.1079 -5.0827 -1.3200 22 16 8.6152 -4.2925 -1.5838 23 6 3.4347 -3.4274 -0.3479 24 1 -0.4849 0.8401 0.0004 25 1 0.3932 -4.8051 0.1929 26 1 1.7206 -6.8642 -0.0246 27 1 4.1424 -6.7342 -0.4381 28 1 5.9208 -3.7990 -1.2410 29 1 8.5165 -7.1097 0.6272 30 1 11.0475 -4.7897 -1.7648 31 1 3.9150 -2.4644 -0.4380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224715965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:28 Heat of formation + Delta-G solvation = 20.054279 kcal Electronic energy + Delta-G solvation = -19280.077065 eV Core-core repulsion = 16040.762972 eV Total energy + Delta-G solvation = -3239.314092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57642 -39.67475 -38.59250 -36.48111 -34.39368 -32.29778 -31.18218 -29.39039 -28.58630 -26.35920 -25.34214 -23.16613 -21.91017 -20.85196 -20.23498 -19.15014 -17.98057 -17.73305 -16.65785 -15.93067 -15.52641 -15.27298 -15.00961 -14.52541 -14.33982 -14.26613 -13.98120 -13.89205 -13.58798 -13.04577 -12.42689 -11.95467 -11.81823 -11.66204 -11.22237 -11.07958 -10.81455 -10.49512 -10.33338 -10.08788 -9.89312 -9.74019 -9.53375 -9.43676 -8.84713 -7.82693 -7.22941 -6.48899 -4.09004 -0.10231 0.82294 1.21039 1.88078 2.25341 2.36444 2.98853 3.06523 3.09233 3.12668 3.13418 3.91395 3.92495 4.50036 4.61546 4.78186 4.97451 5.06480 5.21981 5.64015 5.71835 5.91522 5.95747 6.13898 6.20009 6.55035 6.84785 6.88718 7.05279 7.19907 7.24073 7.35866 7.51920 7.71212 7.94589 8.06312 8.96189 9.65633 10.68916 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.004129 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.185289 B = 6780.064716 C = 8164.404900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.090 0.910 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.196 4.196 12 C -0.062 4.062 13 C -0.204 4.204 14 C 0.177 3.823 15 N -0.661 5.661 16 C 0.593 3.407 17 O -0.502 6.502 18 C -0.285 4.285 19 C 0.116 3.884 20 N -0.476 5.476 21 C 0.031 3.969 22 S 0.171 5.829 23 C -0.254 4.254 24 H 0.271 0.729 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.404 0.596 29 H 0.191 0.809 30 H 0.206 0.794 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.931 -6.679 -4.746 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.107 0.893 9 O -0.077 6.077 10 C 0.114 3.886 11 C -0.216 4.216 12 C -0.081 4.081 13 C -0.225 4.225 14 C 0.085 3.915 15 N -0.305 5.305 16 C 0.378 3.622 17 O -0.378 6.378 18 C -0.409 4.409 19 C -0.042 4.042 20 N -0.189 5.189 21 C -0.264 4.264 22 S 0.425 5.575 23 C -0.275 4.275 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.239 0.761 29 H 0.207 0.793 30 H 0.223 0.777 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.421 -6.495 -4.686 18.270 hybrid contribution 0.702 0.627 0.229 0.969 sum 17.123 -5.867 -4.457 18.641 Atomic orbital electron populations 1.70026 1.05946 1.27841 1.45757 1.25273 0.95831 0.98787 0.96474 0.85804 0.78757 0.79867 0.79138 1.19517 1.20205 1.19507 1.21226 0.91643 0.80882 1.53273 0.89301 1.84020 1.33881 1.11364 1.78465 1.19069 0.89429 0.88168 0.91941 1.20284 1.00237 0.89966 1.11117 1.20533 0.92993 0.97047 0.97536 1.20536 0.94740 0.95703 1.11497 1.17351 0.80465 0.94224 0.99472 1.43323 1.06309 1.29015 1.51839 1.16704 0.83139 0.82004 0.80345 1.90876 1.75710 1.37108 1.34128 1.25839 0.99780 1.05112 1.10168 1.22288 0.85033 0.98783 0.98076 1.66281 1.23318 1.17702 1.11594 1.28848 1.03127 0.95029 0.99364 1.84101 1.02395 1.29726 1.41293 1.20811 0.94845 0.97126 1.14764 0.91899 0.86226 0.86422 0.86281 0.76054 0.79258 0.77697 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.76 9.44 30.88 0.29 -10.47 16 8 H 0.09 2.23 5.30 -52.49 -0.28 1.95 16 9 O -0.17 -4.88 9.76 0.06 0.00 -4.87 16 10 C 0.17 4.01 6.64 -39.13 -0.26 3.75 16 11 C -0.20 -4.13 9.99 -39.36 -0.39 -4.53 16 12 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 13 C -0.20 -3.85 8.65 -39.34 -0.34 -4.19 16 14 C 0.18 3.36 6.27 -83.75 -0.52 2.84 16 15 N -0.66 -10.13 5.33 -11.07 -0.06 -10.19 16 16 C 0.59 8.99 7.52 -12.86 -0.10 8.89 16 17 O -0.50 -9.15 14.57 5.19 0.08 -9.07 16 18 C -0.28 -3.35 6.48 -37.11 -0.24 -3.59 16 19 C 0.12 1.30 11.09 -18.85 -0.21 1.09 16 20 N -0.48 -4.96 10.51 -15.37 -0.16 -5.12 16 21 C 0.03 0.23 12.22 51.75 0.63 0.87 16 22 S 0.17 1.39 22.36 -107.50 -2.40 -1.02 16 23 C -0.25 -5.41 9.05 -39.20 -0.35 -5.77 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 26 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.12 2.18 6.43 -52.48 -0.34 1.84 16 28 H 0.40 5.05 8.01 -40.82 -0.33 4.73 16 29 H 0.19 1.98 8.06 -52.48 -0.42 1.56 16 30 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.13 2.71 5.71 -52.49 -0.30 2.41 16 LS Contribution 295.94 15.07 4.46 4.46 Total: -1.00 -32.85 295.94 -6.41 -39.26 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -2.07 Total: 7.33 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.99 Total: -11.65 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.54 Total: -39.38 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.95 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.40 Total: -1.02 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.85 -6.41 -39.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224715965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.313 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds