Wall clock time and date at job start Tue Mar 31 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48501 * 109.47425 * 240.00756 * 3 2 1 5 5 H 1.48506 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46814 * 120.00546 * 3 2 1 7 7 C 1.38645 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00201 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00492 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00487 * 174.59710 * 9 7 2 11 11 C 1.38957 * 120.03631 * 173.81715 * 10 9 7 12 12 C 1.38126 * 120.07651 * 179.72143 * 11 10 9 13 13 C 1.38195 * 120.13813 * 0.55522 * 12 11 10 14 14 C 1.38936 * 120.06938 * 359.71765 * 13 12 11 15 15 N 1.39836 * 120.04275 * 180.02562 * 14 13 12 16 16 C 1.34784 * 119.99907 * 326.27972 * 15 14 13 17 17 O 1.21696 * 119.99662 * 354.78545 * 16 15 14 18 18 C 1.46645 * 119.99987 * 174.78563 * 16 15 14 19 19 C 1.35678 * 126.13153 * 179.70964 * 18 16 15 20 20 N 1.30938 * 114.18958 * 179.85234 * 19 18 16 21 21 C 1.29430 * 117.36285 * 0.45534 * 20 19 18 22 22 S 1.70950 * 110.39643 * 359.75083 * 21 20 19 23 23 C 1.38728 * 120.02982 * 354.09190 * 10 9 7 24 24 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.95969 * 359.97438 * 11 10 9 26 26 H 1.08002 * 119.92835 * 180.27371 * 12 11 10 27 27 H 1.08008 * 119.96631 * 179.74815 * 13 12 11 28 28 H 0.96995 * 120.00479 * 146.27493 * 15 14 13 29 29 H 1.08004 * 122.90828 * 0.02562 * 19 18 16 30 30 H 1.08003 * 124.80398 * 179.77957 * 21 20 19 31 31 H 1.07995 * 120.07434 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6962 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0692 -3.5042 -0.1150 11 6 1.4553 -4.7448 0.0068 12 6 2.2010 -5.9011 -0.1152 13 6 3.5613 -5.8282 -0.3472 14 6 4.1823 -4.5909 -0.4643 15 7 5.5587 -4.5178 -0.6996 16 6 6.3825 -5.4463 -0.1742 17 8 5.9422 -6.2923 0.5817 18 6 7.8091 -5.4369 -0.5133 19 6 8.7463 -6.3041 -0.0545 20 7 9.9527 -6.0821 -0.5123 21 6 10.1079 -5.0827 -1.3200 22 16 8.6152 -4.2925 -1.5838 23 6 3.4347 -3.4274 -0.3479 24 1 -0.4849 0.8401 0.0004 25 1 0.3932 -4.8051 0.1929 26 1 1.7206 -6.8642 -0.0246 27 1 4.1424 -6.7342 -0.4381 28 1 5.9208 -3.7990 -1.2410 29 1 8.5165 -7.1097 0.6272 30 1 11.0475 -4.7897 -1.7648 31 1 3.9150 -2.4644 -0.4380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224715965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:27 Heat of formation + Delta-G solvation = -3.125877 kcal Electronic energy + Delta-G solvation = -19281.082232 eV Core-core repulsion = 16040.762972 eV Total energy + Delta-G solvation = -3240.319259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.78512 -40.78649 -40.10260 -38.13008 -35.81685 -34.24958 -32.18748 -30.93797 -30.12211 -27.45174 -27.04353 -24.37975 -23.56129 -22.22483 -21.19997 -20.29333 -19.59005 -19.26185 -17.86049 -17.23391 -16.92428 -16.66609 -16.39240 -15.92742 -15.79186 -15.52227 -15.13763 -15.04340 -14.95223 -14.60284 -14.19161 -13.57700 -13.32489 -12.83986 -12.71844 -12.65804 -12.43149 -12.13984 -11.64936 -11.36876 -11.24893 -10.84022 -10.73535 -10.68104 -10.14786 -9.42023 -8.93345 -8.46559 -6.15806 -0.89134 0.10086 0.37205 0.51370 0.66522 1.35296 1.36578 1.47329 1.52869 1.78325 1.98793 2.18387 2.81582 3.14819 3.24899 3.47056 3.57671 4.03691 4.11588 4.28828 4.30512 4.39826 4.59788 4.61308 4.95159 4.99366 5.09539 5.31542 5.36912 5.61940 5.64173 6.00513 6.09491 6.21537 6.48715 6.82637 6.97548 7.76012 8.76074 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.004129 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.185289 B = 6780.064716 C = 8164.404900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.020 4.020 3 Si 1.017 2.983 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.224 6.224 10 C 0.136 3.864 11 C -0.209 4.209 12 C -0.050 4.050 13 C -0.198 4.198 14 C 0.183 3.817 15 N -0.656 5.656 16 C 0.597 3.403 17 O -0.540 6.540 18 C -0.323 4.323 19 C 0.124 3.876 20 N -0.503 5.503 21 C 0.052 3.948 22 S 0.220 5.780 23 C -0.258 4.258 24 H 0.273 0.727 25 H 0.122 0.878 26 H 0.157 0.843 27 H 0.131 0.869 28 H 0.418 0.582 29 H 0.187 0.813 30 H 0.249 0.751 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.267 -6.839 -5.744 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.217 4.217 3 Si 0.836 3.164 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.130 6.130 10 C 0.084 3.916 11 C -0.229 4.229 12 C -0.068 4.068 13 C -0.218 4.218 14 C 0.089 3.911 15 N -0.301 5.301 16 C 0.385 3.615 17 O -0.418 6.418 18 C -0.447 4.447 19 C -0.035 4.035 20 N -0.217 5.217 21 C -0.241 4.241 22 S 0.475 5.525 23 C -0.279 4.279 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.175 0.825 27 H 0.149 0.851 28 H 0.256 0.744 29 H 0.204 0.796 30 H 0.265 0.735 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.813 -6.678 -5.717 21.676 hybrid contribution -0.117 0.408 0.484 0.644 sum 19.696 -6.270 -5.233 21.322 Atomic orbital electron populations 1.70177 1.08059 1.28953 1.48433 1.26573 0.96803 1.02696 0.95677 0.84678 0.77465 0.74279 0.80011 1.17645 1.19781 1.18404 1.21759 0.92490 0.81367 1.53560 0.88052 1.83986 1.35481 1.12475 1.81062 1.19584 0.90662 0.88085 0.93244 1.20526 1.00822 0.89980 1.11548 1.20934 0.92784 0.97748 0.95333 1.20866 0.95061 0.96090 1.09832 1.17386 0.82144 0.93478 0.98081 1.43267 1.04892 1.29851 1.52110 1.17078 0.84340 0.80853 0.79247 1.90843 1.76842 1.38378 1.35722 1.25478 0.98055 1.07893 1.13282 1.22373 0.85391 0.98347 0.97437 1.66368 1.22746 1.19331 1.13235 1.29647 1.04456 0.93073 0.96953 1.83960 1.01574 1.27737 1.39216 1.20838 0.94185 0.98053 1.14849 0.91771 0.85989 0.82529 0.85081 0.74440 0.79569 0.73499 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.30 13.67 21.61 0.30 -55.00 16 2 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 3 Si 1.02 41.28 29.55 68.60 2.03 43.30 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.42 -23.54 9.44 67.92 0.64 -22.89 16 8 H 0.10 5.20 5.30 -2.91 -0.02 5.19 16 9 O -0.22 -13.19 9.76 -22.70 -0.22 -13.41 16 10 C 0.14 6.68 6.64 22.56 0.15 6.83 16 11 C -0.21 -8.90 9.99 22.42 0.22 -8.68 16 12 C -0.05 -1.76 10.03 22.23 0.22 -1.53 16 13 C -0.20 -7.17 8.65 22.43 0.19 -6.98 16 14 C 0.18 6.79 6.27 38.16 0.24 7.03 16 15 N -0.66 -19.23 5.33 -307.15 -1.64 -20.87 16 16 C 0.60 17.37 7.52 86.44 0.65 18.02 16 17 O -0.54 -19.25 14.57 -4.34 -0.06 -19.31 16 18 C -0.32 -7.00 6.48 23.87 0.15 -6.85 16 19 C 0.12 2.57 11.09 84.23 0.93 3.51 16 20 N -0.50 -9.09 10.51 -202.55 -2.13 -11.22 16 21 C 0.05 0.57 12.22 130.60 1.60 2.17 16 22 S 0.22 2.84 22.36 -56.49 -1.26 1.57 16 23 C -0.26 -11.10 9.05 22.52 0.20 -10.89 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 26 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.13 4.53 6.43 -2.91 -0.02 4.51 16 28 H 0.42 9.73 8.01 -92.71 -0.74 8.98 16 29 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 30 H 0.25 0.39 8.06 -2.91 -0.02 0.36 16 31 H 0.13 5.49 5.71 -2.91 -0.02 5.47 16 Total: -1.00 -75.11 295.94 3.15 -71.96 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.46 Total: 23.86 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 5.68 Total: -20.89 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -3.47 Total: -87.09 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.28 Total: -32.72 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.26 Total: 1.57 kcal Total: -75.11 3.15 -71.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224715965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.836 kcal (2) G-P(sol) polarization free energy of solvation -75.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds