Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00074 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00171 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47010 * 90.00165 * 9 7 5 11 11 H 1.48496 * 109.47338 * 210.00715 * 9 7 5 12 12 H 1.48504 * 109.46968 * 330.00328 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.33631 * 126.03742 * 90.00088 * 16 13 3 18 18 N 1.31787 * 114.50114 * 179.97438 * 17 16 13 19 19 C 1.29029 * 117.12004 * 0.02562 * 18 17 16 20 20 C 1.50704 * 124.91200 * 179.97438 * 19 18 17 21 21 S 1.70975 * 110.17083 * 359.72303 * 19 18 17 22 22 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 23 23 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 24 24 H 1.08991 * 109.47557 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 26 26 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 27 27 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 28 28 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 29 29 H 0.97000 * 120.00214 * 179.97438 * 8 7 5 30 30 H 1.08004 * 122.75197 * 0.02562 * 17 16 13 31 31 H 1.09001 * 109.47055 * 89.97717 * 20 19 18 32 32 H 1.08999 * 109.46771 * 209.97232 * 20 19 18 33 33 H 1.08996 * 109.47017 * 329.97528 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 5.0191 2.0818 3.6243 9 14 2.6808 3.5322 3.9473 10 1 1.7954 2.7646 4.8595 11 1 3.4601 4.5233 4.7318 12 1 1.8553 4.2402 2.9360 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 4.6069 0.7623 -2.4120 18 7 5.9213 0.7480 -2.5066 19 6 6.5618 1.7190 -1.9482 20 6 8.0606 1.8765 -1.9480 21 16 5.4636 2.8049 -1.2145 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0923 3.1802 1.0756 28 1 1.3617 1.8097 1.9453 29 1 5.2709 2.4843 4.4702 30 1 3.9817 -0.0043 -2.8455 31 1 8.3654 2.4534 -2.8211 32 1 8.3710 2.3971 -1.0421 33 1 8.5292 0.8930 -1.9806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226418025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = -30.551450 kcal Electronic energy + Delta-G solvation = -19624.955470 eV Core-core repulsion = 16518.890900 eV Total energy + Delta-G solvation = -3106.064570 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.43181 -36.81433 -36.26783 -35.41626 -32.69725 -32.21507 -30.30231 -28.33648 -27.21586 -23.97452 -22.97287 -21.65581 -20.53637 -18.40497 -17.87977 -17.05078 -17.00077 -16.39267 -15.55858 -14.80155 -14.54340 -14.31129 -13.98100 -13.49831 -13.40860 -12.83184 -12.70346 -12.52583 -12.49718 -12.17517 -11.93906 -11.70954 -11.55965 -11.37831 -11.21832 -11.15370 -11.03515 -10.63264 -10.39477 -10.18412 -9.68612 -9.45867 -9.43590 -8.71076 -8.65865 -8.21411 -6.20208 -4.21251 0.48551 0.92331 1.54945 1.90449 2.82280 3.21455 3.29778 3.34893 3.50613 4.13603 4.24009 4.31150 4.87865 5.06567 5.12309 5.29241 5.38865 5.39284 5.56754 5.66379 5.70712 5.80699 5.96749 6.19086 6.21566 6.45194 6.56148 6.78189 7.03278 7.29018 7.47490 7.74471 8.35473 8.82508 9.39987 10.92042 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.009044 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.727955 B = 3095.382886 C = 4386.332740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.972 5.972 4 C 0.211 3.789 5 C -0.543 4.543 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.864 3.136 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.259 1.259 13 S 2.721 3.279 14 O -0.965 6.965 15 O -0.955 6.955 16 C -0.828 4.828 17 C 0.166 3.834 18 N -0.497 5.497 19 C 0.047 3.953 20 C -0.082 4.082 21 S 0.297 5.703 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.182 0.818 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -1.090 -8.807 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.811 5.811 4 C 0.087 3.913 5 C -0.582 4.582 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.690 3.310 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.183 1.183 13 S 2.805 3.195 14 O -0.956 6.956 15 O -0.946 6.946 16 C -1.033 5.033 17 C 0.005 3.995 18 N -0.214 5.214 19 C -0.227 4.227 20 C -0.142 4.142 21 S 0.555 5.445 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.199 0.801 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.260 0.016 -8.841 8.845 hybrid contribution -0.304 -0.565 0.543 0.841 sum -0.044 -0.549 -8.299 8.317 Atomic orbital electron populations 1.22220 0.96524 1.01809 1.02431 1.21107 0.93777 0.82167 1.02986 1.57206 1.77774 1.23446 1.22723 1.19697 0.98283 0.92517 0.80759 1.21414 1.00963 1.29296 1.06531 0.90263 1.24815 0.94985 0.95891 0.96749 1.69885 1.20538 1.43689 1.18800 0.87017 0.81706 0.81709 0.80528 1.19943 1.20837 1.18320 1.01192 0.72140 0.73537 0.72614 1.93530 1.68915 1.75888 1.57243 1.93552 1.85750 1.29846 1.85407 1.37414 1.31198 1.12230 1.22409 1.21403 0.89921 0.95191 0.92971 1.66368 1.07694 1.24963 1.22378 1.27654 1.02796 0.95027 0.97224 1.20522 0.85396 1.04582 1.03732 1.84070 0.92305 1.22301 1.45821 0.92153 0.92384 0.91902 0.91300 0.89601 0.93236 0.94415 0.92458 0.80079 0.89374 0.89524 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.13 2.07 6.06 -4.04 -0.02 2.04 16 3 N -0.97 -19.16 2.77 -115.66 -0.32 -19.48 16 4 C 0.21 4.75 4.51 -5.19 -0.02 4.73 16 5 C -0.54 -13.99 9.94 -34.44 -0.34 -14.34 16 6 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 7 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -25.36 13.96 55.43 0.77 -24.58 16 9 Si 0.86 20.15 27.47 -169.99 -4.67 15.48 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 13 S 2.72 53.36 5.80 -107.50 -0.62 52.73 16 14 O -0.97 -18.68 16.80 -57.17 -0.96 -19.64 16 15 O -0.96 -20.98 16.50 -57.17 -0.94 -21.92 16 16 C -0.83 -15.47 6.66 29.12 0.19 -15.28 16 17 C 0.17 2.85 11.07 -19.19 -0.21 2.64 16 18 N -0.50 -8.56 10.54 -11.86 -0.13 -8.68 16 19 C 0.05 0.75 7.39 -13.45 -0.10 0.65 16 20 C -0.08 -0.92 10.46 36.01 0.38 -0.54 16 21 S 0.30 5.30 23.11 -107.50 -2.48 2.82 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.01 7.61 -51.93 -0.40 0.61 16 26 H 0.09 1.43 8.11 -51.93 -0.42 1.00 16 27 H 0.05 1.17 5.97 -51.93 -0.31 0.86 16 28 H 0.04 0.81 7.54 -51.93 -0.39 0.42 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.18 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -31.49 312.00 -8.57 -40.05 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.07 Total: -1.35 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 0.15 Total: -20.14 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.33 Total: -52.74 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.90 Total: -41.56 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 16 Polarization: 58.66 SS G_CDS: -3.11 Total: 55.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.49 -8.57 -40.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226418025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.503 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds