Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29025 * 124.92000 * 2 1 4 4 C 1.31777 * 117.12702 * 180.02562 * 3 2 1 5 5 C 1.33635 * 114.50339 * 359.97438 * 4 3 2 6 6 S 1.76199 * 126.04153 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40184 * 336.46364 * 6 5 4 8 8 O 1.42098 * 106.40353 * 203.53753 * 6 5 4 9 9 N 1.65601 * 107.21580 * 89.99998 * 6 5 4 10 10 C 1.46505 * 120.00076 * 270.00279 * 9 6 5 11 11 C 1.46506 * 120.00051 * 89.99958 * 9 6 5 12 12 H 1.08996 * 109.46660 * 0.02562 * 11 9 6 13 13 C 1.52997 * 109.47289 * 239.99945 * 11 9 6 14 14 C 1.50699 * 109.46928 * 120.00016 * 11 9 6 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99500 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46921 * 60.00425 * 18 16 14 20 20 H 1.48496 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46946 * 300.00108 * 18 16 14 22 22 S 1.70986 * 124.91525 * 180.31434 * 2 1 3 23 23 H 1.08994 * 109.47407 * 89.97605 * 1 2 3 24 24 H 1.09002 * 109.47270 * 209.97983 * 1 2 3 25 25 H 1.08996 * 109.47076 * 329.97512 * 1 2 3 26 26 H 1.07997 * 122.75042 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.46723 * 270.00194 * 10 9 6 28 28 H 1.08997 * 109.46979 * 29.99898 * 10 9 6 29 29 H 1.09005 * 109.46961 * 150.00249 * 10 9 6 30 30 H 1.09002 * 109.47153 * 179.97438 * 13 11 9 31 31 H 1.09001 * 109.46832 * 60.00146 * 13 11 9 32 32 H 1.09004 * 109.47261 * 300.00128 * 13 11 9 33 33 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 3.9354 -0.4007 -0.0004 6 16 5.5981 -0.9839 -0.0017 7 8 6.3899 0.0624 -0.5471 8 8 5.5626 -2.2962 -0.5456 9 7 6.0619 -1.1457 1.5798 10 6 6.6870 -0.0200 2.2786 11 6 5.8471 -2.4145 2.2801 12 1 5.3749 -3.1271 1.6040 13 6 4.9410 -2.1818 3.4907 14 6 7.1721 -2.9635 2.7425 15 1 8.0831 -2.4214 2.5358 16 6 7.2215 -4.1580 3.4294 17 7 6.1123 -4.8183 3.6806 18 14 8.8641 -4.8390 4.0020 19 1 9.5082 -3.8686 4.9232 20 1 8.6464 -6.1256 4.7109 21 1 9.7432 -5.0645 2.8267 22 16 2.4856 -1.4021 -0.0077 23 1 -0.3634 0.0004 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 4.2532 1.6999 -0.0010 27 1 7.7681 -0.0658 2.1470 28 1 6.3105 0.9169 1.8680 29 1 6.4477 -0.0736 3.3407 30 1 4.7808 -3.1258 4.0115 31 1 3.9826 -1.7846 3.1562 32 1 5.4137 -1.4691 4.1667 33 1 6.1470 -5.6585 4.1643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226418050.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -26.845998 kcal Electronic energy + Delta-G solvation = -19488.948175 eV Core-core repulsion = 16383.044286 eV Total energy + Delta-G solvation = -3105.903890 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71189 -36.74787 -36.24933 -35.34351 -32.63509 -32.46882 -29.15355 -28.57051 -25.66831 -25.18369 -24.20995 -21.04091 -20.52977 -18.53272 -17.99775 -16.97092 -16.80027 -16.17704 -15.33899 -15.06342 -14.68320 -14.42787 -13.73172 -13.56100 -13.24966 -12.96102 -12.81417 -12.74547 -12.06693 -11.85783 -11.70417 -11.56990 -11.41308 -11.29302 -11.23031 -11.00177 -10.82863 -10.53455 -10.32650 -10.06323 -9.72661 -9.71238 -9.31092 -9.01777 -8.48438 -8.05745 -6.10282 -4.17174 0.23532 0.84717 1.26259 1.60548 2.57740 3.29542 3.33899 3.37045 3.59645 3.94512 4.21559 4.38268 4.80981 4.86081 5.14417 5.17421 5.21247 5.42128 5.53097 5.56422 5.95287 6.09779 6.29910 6.56415 6.70951 6.74732 6.95354 7.35779 7.47409 7.57497 7.73663 7.98994 8.22159 8.84620 9.48664 10.95558 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.005698 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.431141 B = 4912.656898 C = 5396.722492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.056 3.944 3 N -0.494 5.494 4 C 0.169 3.831 5 C -0.829 4.829 6 S 2.708 3.292 7 O -0.964 6.964 8 O -0.945 6.945 9 N -0.975 5.975 10 C 0.106 3.894 11 C 0.266 3.734 12 H 0.061 0.939 13 C -0.150 4.150 14 C -0.520 4.520 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 S 0.256 5.744 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.187 0.813 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.009 0.991 32 H 0.035 0.965 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 8.473 -4.164 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.219 4.219 3 N -0.210 5.210 4 C 0.010 3.990 5 C -1.030 5.030 6 S 2.792 3.208 7 O -0.955 6.955 8 O -0.935 6.935 9 N -0.816 5.816 10 C -0.040 4.040 11 C 0.163 3.837 12 H 0.079 0.921 13 C -0.210 4.210 14 C -0.560 4.560 15 H 0.082 0.918 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 S 0.512 5.488 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.203 0.797 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.007 7.540 -4.820 13.424 hybrid contribution 0.847 0.631 0.742 1.290 sum -9.160 8.170 -4.078 12.934 Atomic orbital electron populations 1.20550 0.84790 1.04741 1.04250 1.27702 1.02470 0.92924 0.98837 1.66401 1.04756 1.31865 1.18027 1.21523 0.91237 0.94514 0.91712 1.37865 1.30014 1.06611 1.28552 1.01753 0.72165 0.73316 0.73608 1.93524 1.65540 1.58880 1.77510 1.93592 1.86240 1.36753 1.76907 1.57458 1.71905 1.21434 1.30825 1.21236 0.97902 0.86147 0.98683 1.18840 0.96466 0.77632 0.90747 0.92114 1.22150 0.95787 1.02925 1.00110 1.21261 0.92541 1.06036 1.36151 0.91797 1.24902 0.96832 0.96399 0.95659 1.69846 1.26413 1.15863 1.40760 0.86528 0.83682 0.78156 0.78885 1.20196 1.21199 1.20086 1.84030 0.92775 1.08869 1.63089 0.89075 0.89557 0.88927 0.79651 0.92667 0.93060 0.90680 0.88621 0.97188 0.94561 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.46 36.00 0.38 -0.30 16 2 C 0.06 0.72 7.39 -13.46 -0.10 0.62 16 3 N -0.49 -7.28 10.54 -11.86 -0.13 -7.41 16 4 C 0.17 2.57 11.07 -19.19 -0.21 2.36 16 5 C -0.83 -13.97 6.66 29.12 0.19 -13.78 16 6 S 2.71 53.71 5.79 -107.50 -0.62 53.09 16 7 O -0.96 -19.55 16.91 -57.17 -0.97 -20.52 16 8 O -0.94 -21.66 16.52 -57.17 -0.94 -22.60 16 9 N -0.97 -20.07 3.06 -115.85 -0.35 -20.43 16 10 C 0.11 1.85 9.53 59.85 0.57 2.42 16 11 C 0.27 6.38 2.62 -69.08 -0.18 6.20 16 12 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 13 C -0.15 -3.35 8.95 37.16 0.33 -3.02 16 14 C -0.52 -13.73 8.37 -34.44 -0.29 -14.01 16 15 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 18 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 S 0.26 3.79 23.11 -107.50 -2.48 1.30 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 29 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 30 H 0.10 2.35 6.07 -51.93 -0.32 2.04 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.76 6.66 -51.93 -0.35 0.41 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -31.62 307.05 -8.50 -40.11 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.83 Total: -2.39 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 0.60 Total: -17.89 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.15 Total: -51.50 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.91 Total: -43.12 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 57.50 SS G_CDS: -3.11 Total: 54.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.62 -8.50 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226418050.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.268 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds