Wall clock time and date at job start Tue Mar 31 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29025 * 124.92000 * 2 1 4 4 C 1.31777 * 117.12702 * 180.02562 * 3 2 1 5 5 C 1.33635 * 114.50339 * 359.97438 * 4 3 2 6 6 S 1.76199 * 126.04153 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40184 * 336.46364 * 6 5 4 8 8 O 1.42098 * 106.40353 * 203.53753 * 6 5 4 9 9 N 1.65601 * 107.21580 * 89.99998 * 6 5 4 10 10 C 1.46505 * 120.00076 * 270.00279 * 9 6 5 11 11 C 1.46506 * 120.00051 * 89.99958 * 9 6 5 12 12 H 1.08996 * 109.46660 * 0.02562 * 11 9 6 13 13 C 1.52997 * 109.47289 * 239.99945 * 11 9 6 14 14 C 1.50699 * 109.46928 * 120.00016 * 11 9 6 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99500 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46921 * 60.00425 * 18 16 14 20 20 H 1.48496 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46946 * 300.00108 * 18 16 14 22 22 S 1.70986 * 124.91525 * 180.31434 * 2 1 3 23 23 H 1.08994 * 109.47407 * 89.97605 * 1 2 3 24 24 H 1.09002 * 109.47270 * 209.97983 * 1 2 3 25 25 H 1.08996 * 109.47076 * 329.97512 * 1 2 3 26 26 H 1.07997 * 122.75042 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.46723 * 270.00194 * 10 9 6 28 28 H 1.08997 * 109.46979 * 29.99898 * 10 9 6 29 29 H 1.09005 * 109.46961 * 150.00249 * 10 9 6 30 30 H 1.09002 * 109.47153 * 179.97438 * 13 11 9 31 31 H 1.09001 * 109.46832 * 60.00146 * 13 11 9 32 32 H 1.09004 * 109.47261 * 300.00128 * 13 11 9 33 33 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 3.9354 -0.4007 -0.0004 6 16 5.5981 -0.9839 -0.0017 7 8 6.3899 0.0624 -0.5471 8 8 5.5626 -2.2962 -0.5456 9 7 6.0619 -1.1457 1.5798 10 6 6.6870 -0.0200 2.2786 11 6 5.8471 -2.4145 2.2801 12 1 5.3749 -3.1271 1.6040 13 6 4.9410 -2.1818 3.4907 14 6 7.1721 -2.9635 2.7425 15 1 8.0831 -2.4214 2.5358 16 6 7.2215 -4.1580 3.4294 17 7 6.1123 -4.8183 3.6806 18 14 8.8641 -4.8390 4.0020 19 1 9.5082 -3.8686 4.9232 20 1 8.6464 -6.1256 4.7109 21 1 9.7432 -5.0645 2.8267 22 16 2.4856 -1.4021 -0.0077 23 1 -0.3634 0.0004 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 4.2532 1.6999 -0.0010 27 1 7.7681 -0.0658 2.1470 28 1 6.3105 0.9169 1.8680 29 1 6.4477 -0.0736 3.3407 30 1 4.7808 -3.1258 4.0115 31 1 3.9826 -1.7846 3.1562 32 1 5.4137 -1.4691 4.1667 33 1 6.1470 -5.6585 4.1643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226418050.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:47 Heat of formation + Delta-G solvation = -49.765690 kcal Electronic energy + Delta-G solvation = -19489.942048 eV Core-core repulsion = 16383.044286 eV Total energy + Delta-G solvation = -3106.897762 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84553 -38.38664 -37.95259 -36.98729 -34.54658 -33.43619 -30.94787 -29.60945 -27.30990 -27.03825 -25.26973 -22.68865 -21.90876 -19.82986 -19.39842 -18.60975 -18.41381 -17.80559 -17.05693 -16.38091 -16.08717 -15.70916 -15.27026 -14.83744 -14.65494 -14.61818 -13.77238 -13.64049 -13.52402 -13.45368 -13.28957 -13.19486 -13.00469 -12.85404 -12.79293 -12.63213 -12.56995 -12.24574 -12.16396 -11.90092 -11.18930 -10.91029 -10.86386 -10.49874 -10.14703 -9.72801 -8.11238 -6.24799 -0.94412 -0.62511 0.07784 0.47297 1.42773 1.45283 1.47315 1.54114 2.08006 2.45219 2.69119 2.99920 3.17511 3.38035 3.88756 4.05165 4.12666 4.53375 4.60242 4.66395 4.78650 4.82118 4.95045 4.99872 5.08393 5.10026 5.16521 5.60404 5.68645 5.84512 6.09529 6.28149 6.34328 6.81839 7.44021 8.93210 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.005698 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.431141 B = 4912.656898 C = 5396.722492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.085 3.915 3 N -0.511 5.511 4 C 0.185 3.815 5 C -0.857 4.857 6 S 2.723 3.277 7 O -0.974 6.974 8 O -0.987 6.987 9 N -0.984 5.984 10 C 0.097 3.903 11 C 0.271 3.729 12 H 0.029 0.971 13 C -0.138 4.138 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.020 3.980 17 N -0.913 5.913 18 Si 0.956 3.044 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.279 1.279 22 S 0.231 5.769 23 H 0.116 0.884 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.206 0.794 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 9.965 -3.883 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.190 4.190 3 N -0.227 5.227 4 C 0.025 3.975 5 C -1.063 5.063 6 S 2.812 3.188 7 O -0.965 6.965 8 O -0.977 6.977 9 N -0.824 5.824 10 C -0.048 4.048 11 C 0.167 3.833 12 H 0.047 0.953 13 C -0.197 4.197 14 C -0.578 4.578 15 H 0.078 0.922 16 C -0.180 4.180 17 N -0.552 5.552 18 Si 0.782 3.218 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.204 1.204 22 S 0.488 5.512 23 H 0.134 0.866 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.222 0.778 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.167 9.029 -4.532 15.059 hybrid contribution 1.063 0.264 0.586 1.242 sum -10.105 9.293 -3.946 14.284 Atomic orbital electron populations 1.20894 0.81128 1.06450 1.06271 1.28566 1.04218 0.91265 0.94933 1.66537 1.04458 1.32157 1.19563 1.21926 0.92014 0.94333 0.89232 1.37204 1.28721 1.07695 1.32633 1.00813 0.72758 0.72353 0.72924 1.93499 1.66783 1.58632 1.77545 1.93536 1.87299 1.39132 1.77722 1.57322 1.73048 1.21221 1.30840 1.21473 0.97793 0.86410 0.99081 1.18508 0.95527 0.78579 0.90710 0.95310 1.21948 0.96541 1.01948 0.99261 1.21587 0.93501 1.06497 1.36251 0.92227 1.25622 0.99795 0.96743 0.95885 1.69961 1.27968 1.16084 1.41219 0.85645 0.80036 0.77797 0.78367 1.19103 1.20716 1.20437 1.84142 0.92718 1.10162 1.64156 0.86603 0.87467 0.87491 0.77758 0.93022 0.89860 0.90118 0.91039 0.95179 0.93594 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.46 71.24 0.75 -0.33 16 2 C 0.09 1.96 7.39 88.52 0.65 2.61 16 3 N -0.51 -13.67 10.54 -191.45 -2.02 -15.69 16 4 C 0.18 5.26 11.07 83.66 0.93 6.18 16 5 C -0.86 -28.20 6.66 66.77 0.44 -27.75 16 6 S 2.72 108.83 5.79 -56.49 -0.33 108.51 16 7 O -0.97 -39.16 16.91 -128.00 -2.16 -41.32 16 8 O -0.99 -46.86 16.52 -128.00 -2.11 -48.97 16 9 N -0.98 -40.56 3.06 -520.43 -1.59 -42.16 16 10 C 0.10 3.29 9.53 127.77 1.22 4.51 16 11 C 0.27 13.22 2.62 44.24 0.12 13.34 16 12 H 0.03 1.59 6.91 -2.39 -0.02 1.58 16 13 C -0.14 -6.13 8.95 71.98 0.64 -5.49 16 14 C -0.54 -28.83 8.37 25.60 0.21 -28.61 16 15 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 16 C 0.02 1.05 5.30 84.65 0.45 1.50 16 17 N -0.91 -50.59 11.32 21.45 0.24 -50.35 16 18 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 S 0.23 6.63 23.11 -56.49 -1.31 5.33 16 23 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.21 4.81 8.06 -2.91 -0.02 4.79 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 29 H 0.08 2.61 6.43 -2.38 -0.02 2.59 16 30 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.90 6.66 -2.38 -0.02 1.89 16 33 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -68.45 307.05 -0.72 -69.16 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.13 Total: 4.78 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 5.41 Total: -34.04 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -3.37 Total: -108.20 kcal Atomic # 8 Polarization: -86.01 SS G_CDS: -4.28 Total: -90.29 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 115.47 SS G_CDS: -1.63 Total: 113.84 kcal Total: -68.45 -0.72 -69.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226418050.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.399 kcal (2) G-P(sol) polarization free energy of solvation -68.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds