Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36653 * 120.00085 * 2 1 4 4 H 1.08004 * 120.00193 * 187.84272 * 3 2 1 5 5 C 1.39190 * 119.99871 * 7.83596 * 3 2 1 6 6 N 1.31270 * 120.00261 * 7.94587 * 5 3 2 7 7 Si 1.86806 * 120.00082 * 187.94156 * 5 3 2 8 8 H 1.48498 * 109.46791 * 60.00094 * 7 5 3 9 9 H 1.48496 * 109.47237 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47041 * 300.00293 * 7 5 3 11 11 C 1.34774 * 119.99898 * 180.02562 * 2 1 3 12 12 O 1.21611 * 120.00176 * 183.78607 * 11 2 1 13 13 C 1.47692 * 120.00023 * 3.77900 * 11 2 1 14 14 C 1.38988 * 121.11396 * 306.00981 * 13 11 2 15 15 C 1.39352 * 119.55610 * 180.02562 * 14 13 11 16 16 Cl 1.73593 * 119.06860 * 180.02562 * 15 14 13 17 17 N 1.31146 * 121.85962 * 0.05053 * 15 14 13 18 18 C 1.33600 * 121.83977 * 359.90521 * 17 15 14 19 19 C 1.40686 * 120.95396 * 180.02562 * 18 17 15 20 20 C 1.36096 * 119.74533 * 180.02562 * 19 18 17 21 21 C 1.39317 * 121.03736 * 359.97438 * 20 19 18 22 22 C 1.36291 * 120.82682 * 0.02562 * 21 20 19 23 23 C 1.40043 * 119.64749 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47545 * 174.12746 * 1 2 3 25 25 H 1.09000 * 109.47388 * 294.13038 * 1 2 3 26 26 H 1.09004 * 109.47243 * 54.12863 * 1 2 3 27 27 H 0.97000 * 120.00164 * 179.97438 * 6 5 3 28 28 H 1.08006 * 120.22088 * 359.97438 * 14 13 11 29 29 H 1.07999 * 120.12361 * 0.02562 * 19 18 17 30 30 H 1.08004 * 119.47881 * 179.97438 * 20 19 18 31 31 H 1.08007 * 119.58222 * 179.74579 * 21 20 19 32 32 H 1.08003 * 120.16884 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1483 1.1834 0.0000 4 1 3.2207 1.1878 -0.1276 5 6 1.4621 2.3832 0.1643 6 7 0.1865 2.3727 0.4743 7 14 2.3563 4.0085 -0.0560 8 1 2.8990 4.0917 -1.4358 9 1 1.4095 5.1294 0.1724 10 1 3.4715 4.0963 0.9207 11 6 2.1388 -1.1672 -0.0005 12 8 3.3530 -1.1684 0.0690 13 6 1.4028 -2.4448 -0.0854 14 6 0.3847 -2.7480 0.8109 15 6 -0.2882 -3.9634 0.7013 16 17 -1.5581 -4.3289 1.8270 17 7 0.0112 -4.8391 -0.2279 18 6 0.9771 -4.6144 -1.1232 19 6 1.2824 -5.5668 -2.1126 20 6 2.2717 -5.3126 -3.0121 21 6 2.9909 -4.1202 -2.9710 22 6 2.7225 -3.1749 -2.0266 23 6 1.7117 -3.4040 -1.0847 24 1 -0.3634 -1.0222 -0.1051 25 1 -0.3634 0.4201 0.9378 26 1 -0.3634 0.6022 -0.8328 27 1 -0.2916 3.2089 0.5892 28 1 0.1174 -2.0467 1.5876 29 1 0.7339 -6.4960 -2.1582 30 1 2.5028 -6.0469 -3.7696 31 1 3.7739 -3.9446 -3.6938 32 1 3.2869 -2.2543 -2.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227422367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = 17.147884 kcal Electronic energy + Delta-G solvation = -20259.065981 eV Core-core repulsion = 17017.582151 eV Total energy + Delta-G solvation = -3241.483829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20230 -40.22488 -38.54925 -37.34151 -36.90124 -34.76728 -33.58318 -31.55744 -31.14111 -28.46924 -27.19135 -25.43947 -24.72696 -23.73034 -21.20404 -19.45659 -19.15187 -18.74872 -18.16175 -17.39797 -16.43955 -16.19765 -16.04565 -15.71073 -15.60131 -15.46012 -15.09208 -14.48778 -14.41557 -13.78797 -13.62980 -13.48314 -12.95522 -12.78187 -12.65992 -12.51905 -12.48540 -12.34460 -12.15815 -12.09218 -11.51142 -11.21928 -11.16052 -10.44587 -10.04538 -9.80033 -9.30867 -8.39241 -6.03761 -0.97304 -0.43514 0.55953 0.70797 1.35305 1.40048 1.50883 1.64123 1.91874 2.17699 2.71634 2.90796 3.01553 3.25473 3.49381 3.58030 3.61507 3.97433 4.04081 4.26459 4.31789 4.38231 4.52474 4.62187 4.90366 4.98372 5.00781 5.21576 5.30749 5.34467 5.38661 5.44330 5.78602 5.86451 6.30044 6.44354 6.97954 7.23472 7.78805 8.52240 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005704 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.768923 B = 4907.939900 C = 6276.278505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.429 5.429 3 C -0.345 4.345 4 H 0.086 0.914 5 C 0.003 3.997 6 N -0.882 5.882 7 Si 0.999 3.001 8 H -0.268 1.268 9 H -0.266 1.266 10 H -0.271 1.271 11 C 0.455 3.545 12 O -0.623 6.623 13 C -0.028 4.028 14 C -0.145 4.145 15 C 0.203 3.797 16 Cl -0.009 7.009 17 N -0.471 5.471 18 C 0.128 3.872 19 C -0.099 4.099 20 C -0.077 4.077 21 C -0.101 4.101 22 C -0.111 4.111 23 C -0.094 4.094 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.279 0.721 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.181 0.819 31 H 0.161 0.839 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -11.921 -5.129 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.143 5.143 3 C -0.473 4.473 4 H 0.104 0.896 5 C -0.201 4.201 6 N -0.520 5.520 7 Si 0.822 3.178 8 H -0.193 1.193 9 H -0.190 1.190 10 H -0.197 1.197 11 C 0.245 3.755 12 O -0.512 6.512 13 C -0.040 4.040 14 C -0.167 4.167 15 C 0.025 3.975 16 Cl 0.020 6.980 17 N -0.183 5.183 18 C 0.006 3.994 19 C -0.117 4.117 20 C -0.096 4.096 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.097 4.097 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.171 0.829 29 H 0.182 0.818 30 H 0.199 0.801 31 H 0.178 0.822 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.072 -12.563 -5.069 13.891 hybrid contribution 0.542 1.958 0.578 2.112 sum -2.530 -10.605 -4.491 11.792 Atomic orbital electron populations 1.21987 0.78653 0.98655 1.03857 1.43801 1.07289 1.04628 1.58594 1.19821 0.93836 0.83352 1.50295 0.89590 1.26226 0.96716 1.02632 0.94524 1.70103 1.09203 1.29394 1.43318 0.84906 0.77934 0.75859 0.79149 1.19296 1.18980 1.19659 1.17904 0.87117 0.83381 0.87128 1.90592 1.14532 1.86991 1.59109 1.20511 0.93979 0.94655 0.94866 1.22040 0.96076 0.97347 1.01274 1.21628 0.92653 0.90440 0.92799 1.98395 1.47886 1.94889 1.56860 1.67144 1.16096 1.31613 1.03421 1.18990 0.91992 0.93075 0.95349 1.21134 0.98924 0.98796 0.92878 1.21432 0.93067 0.96920 0.98188 1.21427 0.99926 0.93056 0.97422 1.21163 0.96102 1.00898 0.94793 1.18940 0.99098 0.94817 0.96858 0.92585 0.90313 0.93244 0.91009 0.82885 0.81797 0.80136 0.82168 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.09 8.01 127.77 1.02 6.11 16 2 N -0.43 -22.44 3.01 -662.41 -2.00 -24.43 16 3 C -0.35 -19.21 9.52 84.17 0.80 -18.40 16 4 H 0.09 5.05 7.21 -2.91 -0.02 5.03 16 5 C 0.00 0.13 5.38 85.01 0.46 0.58 16 6 N -0.88 -44.24 9.66 21.70 0.21 -44.03 16 7 Si 1.00 40.52 29.56 68.60 2.03 42.55 16 8 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 9 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 C 0.45 23.29 6.48 86.74 0.56 23.85 16 12 O -0.62 -35.83 15.41 -4.07 -0.06 -35.89 16 13 C -0.03 -1.21 4.91 -19.69 -0.10 -1.31 16 14 C -0.15 -5.40 7.26 22.72 0.16 -5.23 16 15 C 0.20 6.76 7.26 85.06 0.62 7.37 16 16 Cl -0.01 -0.24 29.08 -2.72 -0.08 -0.32 16 17 N -0.47 -15.63 10.26 -179.69 -1.84 -17.47 16 18 C 0.13 4.17 6.61 40.31 0.27 4.44 16 19 C -0.10 -2.33 9.98 22.37 0.22 -2.10 16 20 C -0.08 -1.46 9.94 22.03 0.22 -1.24 16 21 C -0.10 -2.43 9.96 22.08 0.22 -2.21 16 22 C -0.11 -3.89 9.25 22.25 0.21 -3.69 16 23 C -0.09 -3.58 5.76 -21.09 -0.12 -3.71 16 24 H 0.06 2.26 4.60 -2.39 -0.01 2.25 16 25 H 0.08 3.73 6.73 -2.39 -0.02 3.71 16 26 H 0.05 2.35 7.44 -2.39 -0.02 2.33 16 27 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 28 H 0.15 5.48 7.39 -2.91 -0.02 5.46 16 29 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.11 4.60 6.50 -2.91 -0.02 4.58 16 Total: -1.00 -65.80 290.99 3.97 -61.83 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.17 Total: 13.30 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 4.54 Total: 4.47 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -3.63 Total: -85.94 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.06 Total: -35.89 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -65.80 3.97 -61.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227422367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.975 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds