Wall clock time and date at job start Tue Mar 31 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47401 * 2 1 4 4 H 1.08999 * 109.47294 * 178.47767 * 3 2 1 5 5 C 1.50695 * 109.47460 * 298.48075 * 3 2 1 6 6 H 1.08002 * 120.00416 * 119.99315 * 5 3 2 7 7 C 1.37882 * 119.99557 * 300.00067 * 5 3 2 8 8 N 1.31506 * 120.00062 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99688 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47385 * 59.99924 * 9 7 5 11 11 H 1.48507 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47240 * 299.99461 * 9 7 5 13 13 N 1.46504 * 109.47157 * 58.47792 * 3 2 1 14 14 S 1.65603 * 119.99959 * 96.28999 * 13 3 2 15 15 O 1.42098 * 106.40343 * 178.62117 * 14 13 3 16 16 O 1.42097 * 106.40358 * 311.54466 * 14 13 3 17 17 C 1.76204 * 107.21632 * 65.08520 * 14 13 3 18 18 C 1.33634 * 126.04010 * 90.00009 * 17 14 13 19 19 N 1.31777 * 114.50178 * 179.97438 * 18 17 14 20 20 C 1.29025 * 117.12343 * 0.02562 * 19 18 17 21 21 C 1.50705 * 124.91607 * 179.97438 * 20 19 18 22 22 S 1.70975 * 110.16896 * 359.71998 * 20 19 18 23 23 H 1.08992 * 109.47463 * 175.77266 * 1 2 3 24 24 H 1.09009 * 109.46761 * 55.77302 * 1 2 3 25 25 H 1.09002 * 109.47251 * 295.78022 * 1 2 3 26 26 H 1.09000 * 109.46815 * 120.00093 * 2 1 3 27 27 H 1.08997 * 109.47573 * 239.99887 * 2 1 3 28 28 H 0.97000 * 120.00103 * 179.97438 * 8 7 5 29 29 H 0.96999 * 119.99945 * 276.29654 * 13 3 2 30 30 H 1.07997 * 122.74882 * 359.97438 * 18 17 14 31 31 H 1.08996 * 109.47189 * 89.96881 * 21 20 19 32 32 H 1.08999 * 109.47134 * 209.97324 * 21 20 19 33 33 H 1.09004 * 109.46876 * 329.97594 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1297 1.4425 0.0273 5 6 1.5688 2.1420 -1.2488 6 1 0.9457 3.0208 -1.1731 7 6 1.9331 1.6598 -2.4882 8 7 2.6921 0.5899 -2.5804 9 14 1.3484 2.5265 -4.0362 10 1 1.8429 3.9267 -4.0364 11 1 1.8730 1.8155 -5.2297 12 1 -0.1362 2.5258 -4.0732 13 7 1.5220 2.1436 1.1774 14 16 2.4501 2.2653 2.5436 15 8 1.6904 3.0182 3.4790 16 8 2.9411 0.9593 2.8128 17 6 3.8531 3.2499 2.1349 18 6 3.9384 4.5793 2.2406 19 7 5.0985 5.0836 1.8714 20 6 5.9964 4.2536 1.4597 21 6 7.3784 4.6373 0.9969 22 16 5.3940 2.6547 1.5217 23 1 -0.3634 -1.0248 -0.0757 24 1 -0.3633 0.5781 -0.8498 25 1 -0.3634 0.4470 0.9254 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.9481 0.2505 -3.4523 29 1 0.6354 2.5365 1.1568 30 1 3.1233 5.1904 2.5993 31 1 8.0608 4.6315 1.8467 32 1 7.7227 3.9227 0.2494 33 1 7.3511 5.6356 0.5598 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231031626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:15 Heat of formation + Delta-G solvation = -41.960883 kcal Electronic energy + Delta-G solvation = -19478.036184 eV Core-core repulsion = 16371.476864 eV Total energy + Delta-G solvation = -3106.559320 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.57270 -36.79902 -36.02447 -35.39957 -32.35625 -32.26034 -30.35223 -28.45728 -26.42726 -24.10908 -23.59741 -20.80595 -20.11192 -18.51752 -18.24599 -17.32755 -16.54059 -16.20221 -15.23818 -14.90744 -14.78453 -14.37534 -13.69866 -13.53140 -13.23127 -12.84770 -12.78312 -12.62528 -12.25208 -11.80548 -11.67639 -11.58426 -11.51644 -11.24473 -11.04943 -10.91879 -10.63617 -10.49126 -10.05687 -9.72791 -9.60172 -9.58435 -9.24105 -8.84160 -8.64840 -8.30545 -6.17967 -4.25672 0.36694 0.91654 1.38823 1.72410 2.72121 3.21562 3.27060 3.29129 3.64475 4.08060 4.19185 4.30025 4.93969 4.94186 5.13403 5.26443 5.29679 5.53917 5.68843 6.08895 6.20904 6.37857 6.50913 6.59930 6.99817 7.23420 7.39615 7.47176 7.61423 7.62952 7.74721 7.99333 8.21761 8.76031 9.39762 10.87036 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.007603 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.553287 B = 3681.858418 C = 4776.042357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.278 3.722 4 H 0.040 0.960 5 C -0.523 4.523 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -1.093 6.093 14 S 2.717 3.283 15 O -0.974 6.974 16 O -0.956 6.956 17 C -0.826 4.826 18 C 0.174 3.826 19 N -0.495 5.495 20 C 0.057 3.943 21 C -0.083 4.083 22 S 0.262 5.738 23 H 0.026 0.974 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.101 0.899 28 H 0.265 0.735 29 H 0.412 0.588 30 H 0.186 0.814 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 4.314 5.638 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C 0.174 3.826 4 H 0.058 0.942 5 C -0.562 4.562 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.855 5.855 14 S 2.799 3.201 15 O -0.964 6.964 16 O -0.945 6.945 17 C -1.029 5.029 18 C 0.015 3.985 19 N -0.211 5.211 20 C -0.218 4.218 21 C -0.143 4.143 22 S 0.520 5.480 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.246 0.754 30 H 0.203 0.797 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.726 3.307 6.039 9.625 hybrid contribution -1.014 1.651 -1.151 2.254 sum 5.712 4.958 4.887 9.005 Atomic orbital electron populations 1.21570 0.97692 0.98875 1.00690 1.21963 0.95024 0.98746 1.01805 1.18609 0.93757 0.88849 0.81367 0.94192 1.21183 1.32820 1.12362 0.89852 0.91833 1.24868 0.94853 0.94910 0.98930 1.69843 1.35447 1.22082 1.24810 0.86594 0.79219 0.79619 0.82214 1.20303 1.21164 1.20097 1.55532 1.27769 1.70164 1.32028 1.01294 0.72436 0.73369 0.72957 1.93530 1.69012 1.73358 1.60517 1.93585 1.81355 1.35844 1.83753 1.37478 1.24152 1.13352 1.27909 1.21481 0.94699 0.90124 0.92199 1.66389 1.01439 1.37723 1.15578 1.27674 1.00899 0.94610 0.98648 1.20547 0.87689 1.03991 1.02100 1.83973 1.01397 1.08176 1.54503 0.95455 0.91895 0.95035 0.94922 0.88109 0.92470 0.75375 0.79698 0.89181 0.89542 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.51 37.16 0.35 -2.33 16 2 C -0.14 -3.10 5.69 -26.73 -0.15 -3.26 16 3 C 0.28 6.38 2.46 -69.08 -0.17 6.21 16 4 H 0.04 0.97 7.73 -51.93 -0.40 0.57 16 5 C -0.52 -12.86 7.51 -34.44 -0.26 -13.12 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.88 -23.06 11.31 55.43 0.63 -22.44 16 9 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -1.09 -21.42 4.75 -5.88 -0.03 -21.45 16 14 S 2.72 51.25 5.80 -107.50 -0.62 50.62 16 15 O -0.97 -18.96 17.84 -57.17 -1.02 -19.98 16 16 O -0.96 -20.12 17.37 -57.17 -0.99 -21.12 16 17 C -0.83 -14.57 6.51 29.12 0.19 -14.38 16 18 C 0.17 2.87 11.07 -19.19 -0.21 2.66 16 19 N -0.49 -8.03 10.54 -11.87 -0.13 -8.15 16 20 C 0.06 0.82 7.39 -13.45 -0.10 0.72 16 21 C -0.08 -0.80 10.46 36.01 0.38 -0.43 16 22 S 0.26 4.21 22.98 -107.50 -2.47 1.74 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 1.35 7.12 -51.92 -0.37 0.98 16 25 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 26 H 0.03 0.73 7.80 -51.93 -0.41 0.33 16 27 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.41 7.30 8.68 -34.47 -0.30 7.00 16 30 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -30.12 309.05 -8.90 -39.03 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.84 Total: 4.51 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.31 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.47 Total: -52.04 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -2.01 Total: -41.10 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -3.09 Total: 52.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.12 -8.90 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231031626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.932 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds