Wall clock time and date at job start Tue Mar 31 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47401 * 2 1 4 4 H 1.08999 * 109.47294 * 178.47767 * 3 2 1 5 5 C 1.50695 * 109.47460 * 298.48075 * 3 2 1 6 6 H 1.08002 * 120.00416 * 119.99315 * 5 3 2 7 7 C 1.37882 * 119.99557 * 300.00067 * 5 3 2 8 8 N 1.31506 * 120.00062 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99688 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47385 * 59.99924 * 9 7 5 11 11 H 1.48507 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47240 * 299.99461 * 9 7 5 13 13 N 1.46504 * 109.47157 * 58.47792 * 3 2 1 14 14 S 1.65603 * 119.99959 * 96.28999 * 13 3 2 15 15 O 1.42098 * 106.40343 * 178.62117 * 14 13 3 16 16 O 1.42097 * 106.40358 * 311.54466 * 14 13 3 17 17 C 1.76204 * 107.21632 * 65.08520 * 14 13 3 18 18 C 1.33634 * 126.04010 * 90.00009 * 17 14 13 19 19 N 1.31777 * 114.50178 * 179.97438 * 18 17 14 20 20 C 1.29025 * 117.12343 * 0.02562 * 19 18 17 21 21 C 1.50705 * 124.91607 * 179.97438 * 20 19 18 22 22 S 1.70975 * 110.16896 * 359.71998 * 20 19 18 23 23 H 1.08992 * 109.47463 * 175.77266 * 1 2 3 24 24 H 1.09009 * 109.46761 * 55.77302 * 1 2 3 25 25 H 1.09002 * 109.47251 * 295.78022 * 1 2 3 26 26 H 1.09000 * 109.46815 * 120.00093 * 2 1 3 27 27 H 1.08997 * 109.47573 * 239.99887 * 2 1 3 28 28 H 0.97000 * 120.00103 * 179.97438 * 8 7 5 29 29 H 0.96999 * 119.99945 * 276.29654 * 13 3 2 30 30 H 1.07997 * 122.74882 * 359.97438 * 18 17 14 31 31 H 1.08996 * 109.47189 * 89.96881 * 21 20 19 32 32 H 1.08999 * 109.47134 * 209.97324 * 21 20 19 33 33 H 1.09004 * 109.46876 * 329.97594 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1297 1.4425 0.0273 5 6 1.5688 2.1420 -1.2488 6 1 0.9457 3.0208 -1.1731 7 6 1.9331 1.6598 -2.4882 8 7 2.6921 0.5899 -2.5804 9 14 1.3484 2.5265 -4.0362 10 1 1.8429 3.9267 -4.0364 11 1 1.8730 1.8155 -5.2297 12 1 -0.1362 2.5258 -4.0732 13 7 1.5220 2.1436 1.1774 14 16 2.4501 2.2653 2.5436 15 8 1.6904 3.0182 3.4790 16 8 2.9411 0.9593 2.8128 17 6 3.8531 3.2499 2.1349 18 6 3.9384 4.5793 2.2406 19 7 5.0985 5.0836 1.8714 20 6 5.9964 4.2536 1.4597 21 6 7.3784 4.6373 0.9969 22 16 5.3940 2.6547 1.5217 23 1 -0.3634 -1.0248 -0.0757 24 1 -0.3633 0.5781 -0.8498 25 1 -0.3634 0.4470 0.9254 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.9481 0.2505 -3.4523 29 1 0.6354 2.5365 1.1568 30 1 3.1233 5.1904 2.5993 31 1 8.0608 4.6315 1.8467 32 1 7.7227 3.9227 0.2494 33 1 7.3511 5.6356 0.5598 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231031626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:14 Heat of formation + Delta-G solvation = -63.874040 kcal Electronic energy + Delta-G solvation = -19478.986410 eV Core-core repulsion = 16371.476864 eV Total energy + Delta-G solvation = -3107.509546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80290 -38.39548 -37.75266 -36.98076 -34.11658 -33.41627 -32.06112 -29.58782 -28.27012 -25.43187 -25.23712 -22.11890 -21.87632 -19.94891 -19.60006 -18.94201 -18.04974 -17.79262 -17.02436 -16.39208 -16.03319 -15.72353 -15.34693 -14.94666 -14.66574 -14.51983 -14.06211 -13.64561 -13.53505 -13.46534 -13.29173 -13.18189 -12.82715 -12.80686 -12.69026 -12.55705 -12.41975 -12.20099 -11.83536 -11.50660 -11.04758 -10.88154 -10.84475 -10.51852 -10.13673 -10.00064 -8.09177 -6.21685 -0.89521 -0.54235 0.12324 0.49227 1.45771 1.47201 1.48132 1.53618 2.12576 2.46798 2.68273 3.03136 3.20389 3.47906 3.90876 4.17671 4.47020 4.53468 4.59770 4.68931 4.80158 4.80372 4.87739 5.08152 5.25427 5.47642 5.58598 5.72066 5.73626 6.09417 6.13088 6.38041 6.43030 6.86351 7.46102 8.95180 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.007603 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.553287 B = 3681.858418 C = 4776.042357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C 0.283 3.717 4 H 0.025 0.975 5 C -0.529 4.529 6 H 0.066 0.934 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.272 1.272 13 N -1.092 6.092 14 S 2.737 3.263 15 O -0.980 6.980 16 O -0.982 6.982 17 C -0.854 4.854 18 C 0.180 3.820 19 N -0.513 5.513 20 C 0.078 3.922 21 C -0.087 4.087 22 S 0.237 5.763 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.077 0.923 28 H 0.264 0.736 29 H 0.420 0.580 30 H 0.204 0.796 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.352 5.648 5.480 10.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.176 4.176 3 C 0.178 3.822 4 H 0.042 0.958 5 C -0.568 4.568 6 H 0.084 0.916 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.854 5.854 14 S 2.822 3.178 15 O -0.971 6.971 16 O -0.972 6.972 17 C -1.059 5.059 18 C 0.021 3.979 19 N -0.230 5.230 20 C -0.197 4.197 21 C -0.147 4.147 22 S 0.495 5.505 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.256 0.744 30 H 0.221 0.779 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.096 4.629 5.894 10.321 hybrid contribution -1.032 1.306 -1.065 1.976 sum 6.064 5.935 4.828 9.763 Atomic orbital electron populations 1.21503 0.95851 0.99891 1.01034 1.21908 0.96726 0.98552 1.00448 1.18357 0.92933 0.89013 0.81940 0.95774 1.21432 1.32484 1.12351 0.90574 0.91599 1.25498 0.95098 0.95473 1.01338 1.69960 1.36418 1.23140 1.25173 0.85748 0.78846 0.78545 0.79283 1.20184 1.21248 1.19672 1.55350 1.28594 1.70289 1.31206 1.00430 0.72235 0.72768 0.72342 1.93514 1.69599 1.73354 1.60592 1.93547 1.81777 1.37701 1.84139 1.37141 1.24369 1.13739 1.30656 1.21884 0.95365 0.89907 0.90790 1.66500 1.01719 1.37843 1.16894 1.28526 1.02086 0.93179 0.95893 1.20871 0.85183 1.04948 1.03670 1.84046 1.01212 1.09955 1.55320 0.93928 0.93002 0.93363 0.95225 0.90463 0.92615 0.74442 0.77938 0.86331 0.87783 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.51 71.98 0.68 -4.36 16 2 C -0.14 -6.29 5.69 30.59 0.17 -6.11 16 3 C 0.28 13.00 2.46 44.24 0.11 13.11 16 4 H 0.02 1.20 7.73 -2.39 -0.02 1.18 16 5 C -0.53 -25.84 7.51 25.60 0.19 -25.65 16 6 H 0.07 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.03 1.34 5.30 84.66 0.45 1.79 16 8 N -0.91 -47.70 11.31 21.45 0.24 -47.46 16 9 Si 0.95 40.37 29.54 68.60 2.03 42.39 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 13 N -1.09 -42.48 4.75 -172.52 -0.82 -43.30 16 14 S 2.74 102.72 5.80 -56.49 -0.33 102.39 16 15 O -0.98 -37.43 17.84 -128.00 -2.28 -39.71 16 16 O -0.98 -41.71 17.37 -128.00 -2.22 -43.94 16 17 C -0.85 -29.71 6.51 66.77 0.43 -29.28 16 18 C 0.18 5.73 11.07 83.66 0.93 6.66 16 19 N -0.51 -15.70 10.54 -191.45 -2.02 -17.72 16 20 C 0.08 2.10 7.39 88.52 0.65 2.75 16 21 C -0.09 -1.40 10.46 71.24 0.75 -0.65 16 22 S 0.24 7.49 22.98 -56.49 -1.30 6.19 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 2.18 7.12 -2.38 -0.02 2.16 16 25 H 0.05 1.74 7.59 -2.39 -0.02 1.72 16 26 H 0.03 1.34 7.80 -2.39 -0.02 1.32 16 27 H 0.08 3.94 6.03 -2.39 -0.01 3.92 16 28 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 29 H 0.42 14.58 8.68 -96.74 -0.84 13.74 16 30 H 0.20 5.45 8.06 -2.91 -0.02 5.42 16 31 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -62.97 309.05 -2.03 -65.00 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.30 Total: 17.90 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 4.37 Total: -41.75 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -2.60 Total: -108.48 kcal Atomic # 8 Polarization: -79.15 SS G_CDS: -4.51 Total: -83.65 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 110.21 SS G_CDS: -1.63 Total: 108.59 kcal Total: -62.97 -2.03 -65.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231031626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.127 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds