Wall clock time and date at job start Tue Mar 31 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47021 * 2 1 4 4 H 1.08999 * 109.46910 * 303.39577 * 3 2 1 5 5 C 1.50699 * 109.46885 * 183.39960 * 3 2 1 6 6 H 1.08001 * 120.00276 * 239.99629 * 5 3 2 7 7 C 1.37881 * 120.00151 * 59.99618 * 5 3 2 8 8 N 1.31507 * 119.99885 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99810 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47465 * 90.00236 * 9 7 5 11 11 H 1.48506 * 109.47051 * 210.00166 * 9 7 5 12 12 H 1.48502 * 109.47441 * 329.99798 * 9 7 5 13 13 N 1.46497 * 109.47590 * 63.39950 * 3 2 1 14 14 S 1.65602 * 120.00048 * 215.86004 * 13 3 2 15 15 O 1.42098 * 106.39922 * 179.00019 * 14 13 3 16 16 O 1.42101 * 106.39728 * 311.91563 * 14 13 3 17 17 C 1.76198 * 107.22087 * 65.45616 * 14 13 3 18 18 C 1.33633 * 126.03577 * 93.48684 * 17 14 13 19 19 N 1.31781 * 114.49921 * 179.97438 * 18 17 14 20 20 C 1.29036 * 117.12421 * 0.02562 * 19 18 17 21 21 C 1.50696 * 124.91303 * 179.97438 * 20 19 18 22 22 S 1.70969 * 110.16473 * 359.72275 * 20 19 18 23 23 H 1.09004 * 109.47045 * 54.88694 * 1 2 3 24 24 H 1.08999 * 109.46852 * 294.89239 * 1 2 3 25 25 H 1.08995 * 109.47387 * 174.88961 * 1 2 3 26 26 H 1.09000 * 109.47054 * 119.99212 * 2 1 3 27 27 H 1.08998 * 109.47114 * 239.99591 * 2 1 3 28 28 H 0.97005 * 120.00002 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99693 * 35.85293 * 13 3 2 30 30 H 1.08003 * 122.75160 * 0.02562 * 18 17 14 31 31 H 1.09004 * 109.47259 * 89.97519 * 21 20 19 32 32 H 1.09000 * 109.47111 * 209.97365 * 21 20 19 33 33 H 1.08994 * 109.47617 * 329.97570 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 -0.8580 5 6 3.5446 1.4433 -0.0843 6 1 4.1294 1.8952 0.7033 7 6 4.1748 0.8672 -1.1668 8 7 3.4628 0.3173 -2.1261 9 14 6.0399 0.8676 -1.2708 10 1 6.5721 -0.3586 -0.6238 11 1 6.4562 0.8956 -2.6961 12 1 6.5743 2.0660 -0.5755 13 7 1.6197 2.1092 1.2349 14 16 1.2028 3.7117 1.2103 15 8 0.8258 4.0486 2.5383 16 8 2.2345 4.3837 0.5010 17 6 -0.2526 3.8569 0.2278 18 6 -1.5104 3.8420 0.6789 19 7 -2.4285 3.9684 -0.2579 20 6 -2.0151 4.0887 -1.4744 21 6 -2.9090 4.2427 -2.6778 22 16 -0.3064 4.0549 -1.5222 23 1 -0.3633 0.5911 -0.8407 24 1 -0.3633 0.4326 0.9322 25 1 -0.3634 -1.0235 -0.0915 26 1 1.8933 -0.5137 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.9062 -0.0877 -2.8879 29 1 1.5856 1.6119 2.0671 30 1 -1.7545 3.7359 1.7256 31 1 -3.0973 5.3012 -2.8574 32 1 -2.4219 3.8072 -3.5503 33 1 -3.8542 3.7312 -2.4963 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231031630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:17 Heat of formation + Delta-G solvation = -40.807151 kcal Electronic energy + Delta-G solvation = -19567.230115 eV Core-core repulsion = 16460.720824 eV Total energy + Delta-G solvation = -3106.509291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.61478 -36.67865 -35.99345 -35.27781 -32.39110 -32.20730 -30.68656 -28.48729 -26.67219 -24.14123 -23.09537 -20.85289 -20.23784 -18.64822 -18.27530 -17.01296 -16.80048 -16.12128 -15.38211 -14.95312 -14.73525 -14.36891 -13.77569 -13.55978 -13.19468 -13.04634 -12.79553 -12.67393 -11.95340 -11.73027 -11.62917 -11.50660 -11.42514 -11.25201 -11.15379 -10.98843 -10.78954 -10.25924 -9.92361 -9.88311 -9.86712 -9.62079 -9.52566 -8.90862 -8.45798 -8.30396 -6.10278 -4.16525 0.32978 0.95018 1.36293 1.71146 2.66937 3.29044 3.35873 3.42546 3.72671 4.04192 4.24368 4.41031 4.90018 4.99423 5.19684 5.22792 5.26315 5.54925 5.64441 6.02811 6.04662 6.08786 6.24464 6.43021 6.72215 6.86182 7.03861 7.50588 7.56765 7.59540 7.84203 8.03672 8.19394 8.86457 9.49652 10.94347 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.006595 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.875336 B = 4244.940351 C = 4649.973105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.279 3.721 4 H 0.042 0.958 5 C -0.520 4.520 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 N -1.095 6.095 14 S 2.716 3.284 15 O -0.977 6.977 16 O -0.940 6.940 17 C -0.829 4.829 18 C 0.170 3.830 19 N -0.495 5.495 20 C 0.052 3.948 21 C -0.083 4.083 22 S 0.269 5.731 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.107 0.893 28 H 0.263 0.737 29 H 0.408 0.592 30 H 0.186 0.814 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 4.052 -0.493 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.059 0.941 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.857 5.857 14 S 2.798 3.202 15 O -0.967 6.967 16 O -0.929 6.929 17 C -1.031 5.031 18 C 0.011 3.989 19 N -0.211 5.211 20 C -0.223 4.223 21 C -0.143 4.143 22 S 0.527 5.473 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.125 0.875 28 H 0.073 0.927 29 H 0.242 0.758 30 H 0.203 0.797 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.028 4.853 -1.272 11.213 hybrid contribution 0.120 -0.699 0.765 1.043 sum -9.908 4.154 -0.508 10.756 Atomic orbital electron populations 1.21837 0.99101 0.99646 0.99929 1.21890 0.91777 0.99374 1.03568 1.18625 0.94662 0.89992 0.79205 0.94066 1.21506 0.90926 1.37008 1.06547 0.91672 1.24889 0.98663 0.94919 0.95314 1.69831 1.35244 1.38215 1.09847 0.86502 0.85207 0.78533 0.77295 1.20669 1.21134 1.19622 1.55532 1.81412 1.29942 1.18842 1.01408 0.72567 0.73641 0.72600 1.93524 1.84427 1.83472 1.35266 1.93626 1.52002 1.72801 1.74493 1.37636 1.24299 1.28833 1.12341 1.21502 0.85350 0.91805 1.00261 1.66412 1.37537 1.17900 0.99299 1.27720 0.98476 0.98920 0.97212 1.20542 0.98477 1.03973 0.91344 1.84209 1.02433 1.61468 0.99231 0.94085 0.94381 0.94355 0.93791 0.87510 0.92675 0.75817 0.79710 0.89165 0.89558 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.72 37.16 0.36 -2.29 16 2 C -0.13 -2.68 5.37 -26.73 -0.14 -2.83 16 3 C 0.28 6.37 2.17 -69.08 -0.15 6.22 16 4 H 0.04 0.99 7.51 -51.93 -0.39 0.60 16 5 C -0.52 -13.62 8.84 -34.44 -0.30 -13.93 16 6 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -23.69 11.30 55.43 0.63 -23.07 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -1.10 -21.39 4.93 -5.88 -0.03 -21.42 16 14 S 2.72 52.61 5.80 -107.50 -0.62 51.98 16 15 O -0.98 -19.26 17.81 -57.17 -1.02 -20.28 16 16 O -0.94 -21.47 17.73 -57.17 -1.01 -22.48 16 17 C -0.83 -14.24 6.53 29.12 0.19 -14.05 16 18 C 0.17 2.65 11.04 -19.19 -0.21 2.44 16 19 N -0.50 -7.55 10.54 -11.87 -0.13 -7.67 16 20 C 0.05 0.70 7.39 -13.45 -0.10 0.61 16 21 C -0.08 -0.75 10.46 36.00 0.38 -0.37 16 22 S 0.27 4.25 22.77 -107.50 -2.45 1.81 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.62 7.85 -51.93 -0.41 0.21 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.11 2.56 5.99 -51.93 -0.31 2.24 16 28 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.41 6.94 8.85 -34.47 -0.30 6.64 16 30 H 0.19 2.47 8.06 -52.48 -0.42 2.05 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -31.23 311.79 -8.95 -40.17 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.92 Total: 3.01 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -0.08 Total: -22.60 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.47 Total: -52.16 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -2.03 Total: -42.76 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -3.07 Total: 53.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.23 -8.95 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231031630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.632 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds