Wall clock time and date at job start Tue Mar 31 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47021 * 2 1 4 4 H 1.08999 * 109.46910 * 303.39577 * 3 2 1 5 5 C 1.50699 * 109.46885 * 183.39960 * 3 2 1 6 6 H 1.08001 * 120.00276 * 239.99629 * 5 3 2 7 7 C 1.37881 * 120.00151 * 59.99618 * 5 3 2 8 8 N 1.31507 * 119.99885 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99810 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47465 * 90.00236 * 9 7 5 11 11 H 1.48506 * 109.47051 * 210.00166 * 9 7 5 12 12 H 1.48502 * 109.47441 * 329.99798 * 9 7 5 13 13 N 1.46497 * 109.47590 * 63.39950 * 3 2 1 14 14 S 1.65602 * 120.00048 * 215.86004 * 13 3 2 15 15 O 1.42098 * 106.39922 * 179.00019 * 14 13 3 16 16 O 1.42101 * 106.39728 * 311.91563 * 14 13 3 17 17 C 1.76198 * 107.22087 * 65.45616 * 14 13 3 18 18 C 1.33633 * 126.03577 * 93.48684 * 17 14 13 19 19 N 1.31781 * 114.49921 * 179.97438 * 18 17 14 20 20 C 1.29036 * 117.12421 * 0.02562 * 19 18 17 21 21 C 1.50696 * 124.91303 * 179.97438 * 20 19 18 22 22 S 1.70969 * 110.16473 * 359.72275 * 20 19 18 23 23 H 1.09004 * 109.47045 * 54.88694 * 1 2 3 24 24 H 1.08999 * 109.46852 * 294.89239 * 1 2 3 25 25 H 1.08995 * 109.47387 * 174.88961 * 1 2 3 26 26 H 1.09000 * 109.47054 * 119.99212 * 2 1 3 27 27 H 1.08998 * 109.47114 * 239.99591 * 2 1 3 28 28 H 0.97005 * 120.00002 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99693 * 35.85293 * 13 3 2 30 30 H 1.08003 * 122.75160 * 0.02562 * 18 17 14 31 31 H 1.09004 * 109.47259 * 89.97519 * 21 20 19 32 32 H 1.09000 * 109.47111 * 209.97365 * 21 20 19 33 33 H 1.08994 * 109.47617 * 329.97570 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 -0.8580 5 6 3.5446 1.4433 -0.0843 6 1 4.1294 1.8952 0.7033 7 6 4.1748 0.8672 -1.1668 8 7 3.4628 0.3173 -2.1261 9 14 6.0399 0.8676 -1.2708 10 1 6.5721 -0.3586 -0.6238 11 1 6.4562 0.8956 -2.6961 12 1 6.5743 2.0660 -0.5755 13 7 1.6197 2.1092 1.2349 14 16 1.2028 3.7117 1.2103 15 8 0.8258 4.0486 2.5383 16 8 2.2345 4.3837 0.5010 17 6 -0.2526 3.8569 0.2278 18 6 -1.5104 3.8420 0.6789 19 7 -2.4285 3.9684 -0.2579 20 6 -2.0151 4.0887 -1.4744 21 6 -2.9090 4.2427 -2.6778 22 16 -0.3064 4.0549 -1.5222 23 1 -0.3633 0.5911 -0.8407 24 1 -0.3633 0.4326 0.9322 25 1 -0.3634 -1.0235 -0.0915 26 1 1.8933 -0.5137 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.9062 -0.0877 -2.8879 29 1 1.5856 1.6119 2.0671 30 1 -1.7545 3.7359 1.7256 31 1 -3.0973 5.3012 -2.8574 32 1 -2.4219 3.8072 -3.5503 33 1 -3.8542 3.7312 -2.4963 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231031630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:17 Heat of formation + Delta-G solvation = -64.104703 kcal Electronic energy + Delta-G solvation = -19568.240372 eV Core-core repulsion = 16460.720824 eV Total energy + Delta-G solvation = -3107.519548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79551 -38.30619 -37.70609 -36.91833 -34.14643 -33.40146 -32.27069 -29.57408 -28.53102 -25.25189 -24.87603 -22.19174 -21.88368 -20.10016 -19.52542 -18.74651 -18.37613 -17.70704 -17.07349 -16.43259 -16.02180 -15.75210 -15.34254 -14.87074 -14.72978 -14.60771 -13.62427 -13.61113 -13.50523 -13.38242 -13.24253 -13.10774 -13.03625 -12.79813 -12.75124 -12.59316 -12.52397 -12.09174 -11.69160 -11.60597 -11.48415 -10.85317 -10.80487 -10.44469 -10.13115 -10.00854 -8.08973 -6.20798 -0.88409 -0.53059 0.12773 0.52444 1.42913 1.45668 1.47995 1.55510 2.20528 2.47050 2.72733 3.03958 3.17929 3.54473 3.92335 4.19772 4.44254 4.55270 4.57861 4.61083 4.67587 4.82105 4.85228 5.09687 5.11244 5.32273 5.37658 5.68858 5.79560 6.01870 6.27767 6.38303 6.43425 6.84682 7.47159 8.93521 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.006595 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.875336 B = 4244.940351 C = 4649.973105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.284 3.716 4 H 0.029 0.971 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.280 1.280 13 N -1.094 6.094 14 S 2.734 3.266 15 O -0.983 6.983 16 O -0.982 6.982 17 C -0.852 4.852 18 C 0.184 3.816 19 N -0.509 5.509 20 C 0.081 3.919 21 C -0.088 4.088 22 S 0.231 5.769 23 H 0.035 0.965 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.265 0.735 29 H 0.419 0.581 30 H 0.206 0.794 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 3.923 -0.756 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.047 0.953 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.856 5.856 14 S 2.820 3.180 15 O -0.973 6.973 16 O -0.972 6.972 17 C -1.058 5.058 18 C 0.025 3.975 19 N -0.226 5.226 20 C -0.194 4.194 21 C -0.147 4.147 22 S 0.489 5.511 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.254 0.746 30 H 0.222 0.778 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.797 4.708 -1.501 12.791 hybrid contribution 0.542 -0.603 0.810 1.146 sum -11.255 4.105 -0.691 12.001 Atomic orbital electron populations 1.21732 0.96361 1.00898 1.00637 1.21716 0.94205 0.97793 1.02336 1.18385 0.92851 0.91004 0.79913 0.95324 1.21812 0.93004 1.36989 1.06356 0.93139 1.25481 1.01899 0.94916 0.95285 1.69918 1.36237 1.38463 1.10018 0.85767 0.81488 0.78325 0.77345 1.19689 1.20567 1.20504 1.55298 1.81915 1.29887 1.18508 1.00448 0.72464 0.72934 0.72178 1.93505 1.84631 1.83441 1.35742 1.93571 1.54615 1.73734 1.75312 1.37073 1.23595 1.32411 1.12759 1.21911 0.84752 0.89485 1.01390 1.66540 1.37021 1.19257 0.99739 1.28539 0.97433 0.95272 0.98107 1.20873 0.98142 1.05981 0.89748 1.84360 1.05038 1.62838 0.98886 0.94570 0.92678 0.92570 0.93503 0.90209 0.92566 0.74572 0.77758 0.86615 0.87767 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.72 71.98 0.70 -4.05 16 2 C -0.12 -5.09 5.37 30.60 0.16 -4.93 16 3 C 0.28 13.06 2.17 44.25 0.10 13.15 16 4 H 0.03 1.41 7.51 -2.39 -0.02 1.39 16 5 C -0.54 -28.89 8.84 25.60 0.23 -28.67 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.02 1.30 5.30 84.66 0.45 1.75 16 8 N -0.91 -48.59 11.30 21.45 0.24 -48.34 16 9 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 N -1.09 -42.76 4.93 -172.53 -0.85 -43.61 16 14 S 2.73 106.35 5.80 -56.49 -0.33 106.03 16 15 O -0.98 -38.28 17.81 -128.00 -2.28 -40.56 16 16 O -0.98 -46.14 17.73 -128.00 -2.27 -48.41 16 17 C -0.85 -28.67 6.53 66.77 0.44 -28.23 16 18 C 0.18 5.41 11.04 83.66 0.92 6.34 16 19 N -0.51 -14.21 10.54 -191.45 -2.02 -16.23 16 20 C 0.08 2.02 7.39 88.52 0.65 2.67 16 21 C -0.09 -1.26 10.46 71.23 0.75 -0.51 16 22 S 0.23 7.15 22.77 -56.49 -1.29 5.87 16 23 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.05 1.68 7.85 -2.39 -0.02 1.66 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 3.84 5.99 -2.39 -0.01 3.83 16 28 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 29 H 0.42 14.09 8.85 -96.74 -0.86 13.23 16 30 H 0.21 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -66.78 311.79 -2.09 -68.87 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.28 Total: 13.76 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 4.39 Total: -42.49 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -2.63 Total: -108.18 kcal Atomic # 8 Polarization: -84.41 SS G_CDS: -4.55 Total: -88.96 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 113.51 SS G_CDS: -1.61 Total: 111.89 kcal Total: -66.78 -2.09 -68.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231031630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.766 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds