Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46951 * 240.00159 * 3 2 1 5 5 H 1.48496 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46775 * 120.00116 * 3 2 1 7 7 C 1.39907 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00024 * 197.38773 * 7 2 1 9 9 C 1.41218 * 120.00361 * 17.38699 * 7 2 1 10 10 C 1.40828 * 120.18432 * 204.87397 * 9 7 2 11 11 C 1.36441 * 119.81154 * 180.02562 * 10 9 7 12 12 C 1.39288 * 120.18653 * 0.02562 * 11 10 9 13 13 O 1.35738 * 119.81072 * 179.97438 * 12 11 10 14 14 C 1.34603 * 117.00242 * 84.68467 * 13 12 11 15 15 O 1.21431 * 119.99357 * 355.23990 * 14 13 12 16 16 O 1.34544 * 119.99848 * 175.24604 * 14 13 12 17 17 C 1.45205 * 116.99348 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46584 * 179.97438 * 17 16 14 19 19 F 1.39896 * 109.47199 * 60.00021 * 18 17 16 20 20 F 1.39900 * 109.46894 * 180.02562 * 18 17 16 21 21 F 1.39897 * 109.47438 * 299.99754 * 18 17 16 22 22 C 1.39275 * 120.37002 * 0.23291 * 12 11 10 23 23 C 1.36446 * 120.18924 * 359.47950 * 22 12 11 24 24 H 0.96993 * 119.99817 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.09338 * 359.97438 * 10 9 7 26 26 H 1.08006 * 119.90854 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47028 * 299.99375 * 17 16 14 28 28 H 1.09002 * 109.47339 * 60.00174 * 17 16 14 29 29 H 1.08002 * 119.90444 * 179.72536 * 22 12 11 30 30 H 1.07999 * 120.10269 * 180.25680 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0512 -1.2332 0.2789 9 6 1.3506 -2.4066 -0.3665 10 6 1.8230 -3.6473 0.1034 11 6 1.1820 -4.7971 -0.2554 12 6 0.0639 -4.7462 -1.0844 13 8 -0.5676 -5.8949 -1.4370 14 6 -1.4849 -6.3765 -0.5777 15 8 -1.6534 -5.8358 0.4964 16 8 -2.2150 -7.4570 -0.9090 17 6 -3.1851 -7.9213 0.0666 18 6 -3.9138 -9.1491 -0.4835 19 9 -2.9871 -10.1653 -0.7399 20 9 -4.8488 -9.5962 0.4562 21 9 -4.5721 -8.8081 -1.6698 22 6 -0.4066 -3.5238 -1.5579 23 6 0.2191 -2.3641 -1.2039 24 1 -0.4849 0.8400 0.0004 25 1 2.6906 -3.6885 0.7453 26 1 1.5427 -5.7494 0.1044 27 1 -2.6722 -8.1867 0.9910 28 1 -3.9074 -7.1297 0.2660 29 1 -1.2716 -3.4935 -2.2038 30 1 -0.1494 -1.4167 -1.5685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283790389.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -255.288189 kcal Electronic energy + Delta-G solvation = -22131.348002 eV Core-core repulsion = 17863.191801 eV Total energy + Delta-G solvation = -4268.156200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.39132 -47.95073 -47.82960 -40.73810 -38.75744 -36.97473 -35.70219 -33.71986 -30.66776 -29.88128 -29.41454 -25.65850 -23.97361 -22.63335 -21.37716 -20.68060 -19.14412 -18.91788 -18.49419 -17.93321 -17.62763 -17.13879 -16.77406 -15.59816 -15.21840 -14.88162 -14.72448 -14.45246 -14.28760 -14.18591 -14.00252 -14.00080 -13.33783 -13.26508 -12.91393 -12.37799 -12.18069 -12.03429 -11.61050 -11.30535 -11.20795 -11.13893 -10.96758 -10.72112 -10.46915 -10.11043 -9.53164 -9.33581 -7.84559 -7.59496 -7.06998 -4.65104 1.29827 2.32256 2.64313 2.76180 2.87273 2.92582 2.94317 3.02742 3.38923 3.68153 3.71121 3.88690 4.30590 4.63039 4.68857 4.92708 5.42709 5.90318 5.99375 6.06809 6.66269 6.75484 6.84547 6.97996 7.08267 7.30106 7.52834 7.72495 7.73594 7.93538 8.26622 8.45905 8.54913 8.74160 9.85069 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.043844 B = 0.003004 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.467668 B = 9317.321647 C = 9520.946690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.438 4.438 8 H 0.086 0.914 9 C 0.120 3.880 10 C -0.219 4.219 11 C -0.062 4.062 12 C -0.084 4.084 13 O -0.235 6.235 14 C 0.571 3.429 15 O -0.532 6.532 16 O -0.326 6.326 17 C 0.033 3.967 18 C 0.468 3.532 19 F -0.172 7.172 20 F -0.170 7.170 21 F -0.172 7.172 22 C -0.078 4.078 23 C -0.162 4.162 24 H 0.288 0.712 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -9.839 -0.493 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.117 3.883 10 C -0.239 4.239 11 C -0.081 4.081 12 C -0.126 4.126 13 O -0.149 6.149 14 C 0.382 3.618 15 O -0.429 6.429 16 O -0.245 6.245 17 C -0.043 4.043 18 C 0.413 3.587 19 F -0.154 7.154 20 F -0.152 7.152 21 F -0.153 7.153 22 C -0.097 4.097 23 C -0.181 4.181 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.922 -9.653 -0.369 11.331 hybrid contribution -0.027 0.524 0.288 0.598 sum -5.950 -9.130 -0.081 10.898 Atomic orbital electron populations 1.69828 1.07832 1.30285 1.31551 1.26094 0.94875 1.01999 0.92032 0.86201 0.80120 0.79282 0.80336 1.18431 1.20009 1.18650 1.19772 0.98215 0.91049 1.37476 0.89555 1.17776 0.90613 0.92255 0.87668 1.20658 1.04585 0.91944 1.06710 1.20415 0.95096 0.97616 0.94955 1.18028 0.97372 0.82061 1.15129 1.84849 1.46451 1.39931 1.43688 1.22127 0.78671 0.77931 0.83051 1.91082 1.68555 1.59739 1.23531 1.86214 1.48661 1.44485 1.45157 1.24018 0.93027 0.94762 0.92480 1.19948 0.77802 0.84722 0.76210 1.93240 1.65456 1.62554 1.94131 1.93232 1.66559 1.90153 1.65219 1.93243 1.81860 1.92042 1.48199 1.20494 0.98698 0.91402 0.99066 1.20940 0.99910 0.96272 1.00971 0.90062 0.87851 0.88503 0.86240 0.86199 0.88397 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.56 10.95 55.55 0.61 -17.95 16 2 C 0.07 1.64 5.14 -17.33 -0.09 1.55 16 3 Si 0.92 17.07 29.59 -169.99 -5.03 12.04 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.72 9.04 -37.83 -0.34 -11.06 16 8 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.03 5.57 -106.81 -0.60 2.44 16 10 C -0.22 -5.18 9.74 -39.25 -0.38 -5.56 16 11 C -0.06 -1.42 9.88 -39.84 -0.39 -1.81 16 12 C -0.08 -1.95 4.96 -38.81 -0.19 -2.14 16 13 O -0.23 -5.01 10.05 -31.84 -0.32 -5.33 16 14 C 0.57 11.23 8.88 101.05 0.90 12.12 16 15 O -0.53 -11.64 15.88 -27.40 -0.44 -12.07 16 16 O -0.33 -5.19 10.17 -47.99 -0.49 -5.68 16 17 C 0.03 0.38 5.43 37.16 0.20 0.59 16 18 C 0.47 5.02 3.32 37.16 0.12 5.14 16 19 F -0.17 -2.02 17.26 2.25 0.04 -1.98 16 20 F -0.17 -1.67 17.32 2.25 0.04 -1.63 16 21 F -0.17 -2.04 17.26 2.25 0.04 -2.00 16 22 C -0.08 -1.83 9.92 -39.84 -0.40 -2.22 16 23 C -0.16 -4.02 8.64 -39.25 -0.34 -4.36 16 24 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 25 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 26 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 27 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.13 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 293.16 15.07 4.42 4.42 Total: -1.00 -27.35 293.16 -4.62 -31.97 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -1.99 Total: 3.54 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.51 Total: -5.31 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: 0.61 Total: -17.95 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.24 Total: -23.09 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.12 Total: -5.61 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.35 -4.62 -31.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283790389.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.318 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds