Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46951 * 240.00159 * 3 2 1 5 5 H 1.48496 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46775 * 120.00116 * 3 2 1 7 7 C 1.39907 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00024 * 197.38773 * 7 2 1 9 9 C 1.41218 * 120.00361 * 17.38699 * 7 2 1 10 10 C 1.40828 * 120.18432 * 204.87397 * 9 7 2 11 11 C 1.36441 * 119.81154 * 180.02562 * 10 9 7 12 12 C 1.39288 * 120.18653 * 0.02562 * 11 10 9 13 13 O 1.35738 * 119.81072 * 179.97438 * 12 11 10 14 14 C 1.34603 * 117.00242 * 84.68467 * 13 12 11 15 15 O 1.21431 * 119.99357 * 355.23990 * 14 13 12 16 16 O 1.34544 * 119.99848 * 175.24604 * 14 13 12 17 17 C 1.45205 * 116.99348 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46584 * 179.97438 * 17 16 14 19 19 F 1.39896 * 109.47199 * 60.00021 * 18 17 16 20 20 F 1.39900 * 109.46894 * 180.02562 * 18 17 16 21 21 F 1.39897 * 109.47438 * 299.99754 * 18 17 16 22 22 C 1.39275 * 120.37002 * 0.23291 * 12 11 10 23 23 C 1.36446 * 120.18924 * 359.47950 * 22 12 11 24 24 H 0.96993 * 119.99817 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.09338 * 359.97438 * 10 9 7 26 26 H 1.08006 * 119.90854 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47028 * 299.99375 * 17 16 14 28 28 H 1.09002 * 109.47339 * 60.00174 * 17 16 14 29 29 H 1.08002 * 119.90444 * 179.72536 * 22 12 11 30 30 H 1.07999 * 120.10269 * 180.25680 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0512 -1.2332 0.2789 9 6 1.3506 -2.4066 -0.3665 10 6 1.8230 -3.6473 0.1034 11 6 1.1820 -4.7971 -0.2554 12 6 0.0639 -4.7462 -1.0844 13 8 -0.5676 -5.8949 -1.4370 14 6 -1.4849 -6.3765 -0.5777 15 8 -1.6534 -5.8358 0.4964 16 8 -2.2150 -7.4570 -0.9090 17 6 -3.1851 -7.9213 0.0666 18 6 -3.9138 -9.1491 -0.4835 19 9 -2.9871 -10.1653 -0.7399 20 9 -4.8488 -9.5962 0.4562 21 9 -4.5721 -8.8081 -1.6698 22 6 -0.4066 -3.5238 -1.5579 23 6 0.2191 -2.3641 -1.2039 24 1 -0.4849 0.8400 0.0004 25 1 2.6906 -3.6885 0.7453 26 1 1.5427 -5.7494 0.1044 27 1 -2.6722 -8.1867 0.9910 28 1 -3.9074 -7.1297 0.2660 29 1 -1.2716 -3.4935 -2.2038 30 1 -0.1494 -1.4167 -1.5685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283790389.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = -267.963854 kcal Electronic energy + Delta-G solvation = -22131.897660 eV Core-core repulsion = 17863.191801 eV Total energy + Delta-G solvation = -4268.705858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.28621 -48.82167 -48.75497 -42.32633 -40.32216 -38.67100 -37.31348 -35.48100 -31.89340 -31.60728 -31.12326 -27.39666 -25.19651 -24.00065 -23.19386 -22.35242 -20.50888 -19.83948 -19.66974 -19.42097 -19.08492 -18.56472 -18.21596 -17.26026 -16.65318 -16.21094 -15.86296 -15.62976 -15.59618 -15.18735 -14.92221 -14.89816 -14.80803 -14.74118 -14.49305 -14.13795 -13.88509 -13.33483 -13.11317 -12.91428 -12.80722 -12.67521 -12.35593 -12.33088 -12.17305 -11.80416 -11.27593 -11.09088 -9.68331 -9.43421 -8.79762 -6.49586 -0.11882 0.82455 1.02058 1.18343 1.40142 1.46147 1.53580 1.59909 2.16551 2.44671 2.55175 2.78890 2.88055 3.40720 3.59150 3.79192 3.85679 4.22817 4.27663 4.40634 4.88230 4.98169 5.06053 5.18588 5.37090 5.49045 5.77415 5.88861 5.92892 6.11907 6.45772 6.71045 6.73606 7.00380 8.15584 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.043844 B = 0.003004 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.467668 B = 9317.321647 C = 9520.946690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.033 3.967 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.093 0.907 9 C 0.092 3.908 10 C -0.230 4.230 11 C -0.067 4.067 12 C -0.088 4.088 13 O -0.241 6.241 14 C 0.582 3.418 15 O -0.554 6.554 16 O -0.322 6.322 17 C 0.025 3.975 18 C 0.479 3.521 19 F -0.177 7.177 20 F -0.160 7.160 21 F -0.178 7.178 22 C -0.085 4.085 23 C -0.180 4.180 24 H 0.296 0.704 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.113 0.887 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 -10.121 -0.148 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.495 4.495 8 H 0.111 0.889 9 C 0.089 3.911 10 C -0.250 4.250 11 C -0.086 4.086 12 C -0.130 4.130 13 O -0.155 6.155 14 C 0.394 3.606 15 O -0.453 6.453 16 O -0.240 6.240 17 C -0.050 4.050 18 C 0.425 3.575 19 F -0.158 7.158 20 F -0.142 7.142 21 F -0.159 7.159 22 C -0.104 4.104 23 C -0.199 4.199 24 H 0.107 0.893 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.131 0.869 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.055 -9.973 -0.032 11.668 hybrid contribution -0.131 0.402 0.178 0.459 sum -6.186 -9.571 0.145 11.397 Atomic orbital electron populations 1.69870 1.09340 1.31687 1.31934 1.26973 0.95532 1.05129 0.90850 0.85095 0.78713 0.74678 0.80422 1.18061 1.19138 1.18021 1.20081 0.98769 0.91886 1.38758 0.88922 1.18134 0.91220 0.93400 0.88313 1.20871 1.05196 0.91820 1.07082 1.20661 0.94812 0.98406 0.94681 1.18081 0.97921 0.82314 1.14680 1.84687 1.47162 1.39377 1.44307 1.21723 0.78371 0.78411 0.82126 1.91075 1.69206 1.60726 1.24327 1.86182 1.48838 1.42633 1.46375 1.24439 0.92688 0.95572 0.92298 1.19704 0.77649 0.84172 0.76005 1.93239 1.65697 1.62736 1.94166 1.93258 1.66121 1.89949 1.64840 1.93239 1.81971 1.92076 1.48662 1.20678 0.99069 0.91375 0.99256 1.20922 1.00687 0.96376 1.01965 0.89254 0.86408 0.86264 0.84270 0.84588 0.86909 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.13 10.95 21.82 0.24 -38.89 16 2 C 0.03 1.54 5.14 85.24 0.44 1.98 16 3 Si 0.99 34.48 29.59 68.60 2.03 36.51 16 4 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 5 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 6 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 7 C -0.47 -23.18 9.04 23.41 0.21 -22.97 16 8 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 9 C 0.09 4.75 5.57 -21.28 -0.12 4.63 16 10 C -0.23 -10.90 9.74 22.48 0.22 -10.68 16 11 C -0.07 -3.02 9.88 22.10 0.22 -2.80 16 12 C -0.09 -4.05 4.96 22.77 0.11 -3.94 16 13 O -0.24 -10.04 10.05 10.81 0.11 -9.93 16 14 C 0.58 22.05 8.88 113.37 1.01 23.06 16 15 O -0.55 -23.54 15.88 27.89 0.44 -23.09 16 16 O -0.32 -9.62 10.17 -46.96 -0.48 -10.09 16 17 C 0.02 0.52 5.43 71.98 0.39 0.91 16 18 C 0.48 9.22 3.32 71.98 0.24 9.46 16 19 F -0.18 -3.79 17.26 44.97 0.78 -3.01 16 20 F -0.16 -2.76 17.32 44.97 0.78 -1.98 16 21 F -0.18 -3.89 17.26 44.97 0.78 -3.11 16 22 C -0.08 -4.03 9.92 22.10 0.22 -3.81 16 23 C -0.18 -9.17 8.64 22.49 0.19 -8.97 16 24 H 0.30 12.90 8.30 -92.71 -0.77 12.13 16 25 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 26 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 27 H 0.14 2.42 8.14 -2.39 -0.02 2.41 16 28 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 30 H 0.12 6.05 6.16 -2.91 -0.02 6.03 16 Total: -1.00 -57.96 293.16 9.01 -48.95 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.20 Total: 17.80 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 3.13 Total: -13.15 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.24 Total: -38.89 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: 0.07 Total: -43.12 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 2.33 Total: -8.11 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -57.96 9.01 -48.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283790389.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.016 kcal (2) G-P(sol) polarization free energy of solvation -57.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds