Wall clock time and date at job start Tue Mar 31 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47413 * 2 1 4 4 C 1.76195 * 103.00128 * 179.97438 * 3 2 1 5 5 N 1.29644 * 125.40608 * 359.97438 * 4 3 2 6 6 N 1.37764 * 115.60653 * 179.73997 * 5 4 3 7 7 C 1.29644 * 115.61307 * 0.50339 * 6 5 4 8 8 S 1.76202 * 125.40933 * 179.79937 * 7 6 5 9 9 C 1.81401 * 102.99950 * 359.69036 * 8 7 6 10 10 H 1.08998 * 109.46875 * 55.00409 * 9 8 7 11 11 C 1.53001 * 109.47343 * 295.00268 * 9 8 7 12 12 C 1.52997 * 109.47024 * 175.00283 * 9 8 7 13 13 C 1.50706 * 109.47238 * 294.99935 * 12 9 8 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 S 1.76036 * 125.40732 * 180.02562 * 4 3 2 22 22 H 1.09005 * 109.46848 * 60.00363 * 1 2 3 23 23 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47414 * 300.00207 * 1 2 3 25 25 H 1.08997 * 109.47414 * 239.99793 * 2 1 3 26 26 H 1.09001 * 109.46466 * 119.99955 * 2 1 3 27 27 H 1.09000 * 109.46959 * 59.99878 * 11 9 8 28 28 H 1.08998 * 109.47252 * 179.97438 * 11 9 8 29 29 H 1.08998 * 109.47250 * 299.99911 * 11 9 8 30 30 H 1.09001 * 109.46832 * 175.00249 * 12 9 8 31 31 H 1.09000 * 109.47611 * 55.00546 * 12 9 8 32 32 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5116 0.0008 5 7 4.5127 0.3769 0.0017 6 7 5.8880 0.4569 -0.0035 7 6 6.3797 1.6564 0.0017 8 16 8.0957 2.0565 0.0020 9 6 8.8944 0.4277 0.0033 10 1 8.5254 -0.1585 -0.8383 11 6 8.5710 -0.2979 1.3109 12 6 10.4092 0.6024 -0.1219 13 6 10.7361 1.2057 -1.4637 14 1 9.9427 1.4413 -2.1575 15 6 12.0479 1.4568 -1.8055 16 7 13.0141 1.1694 -0.9607 17 14 12.4530 2.2052 -3.4684 18 1 11.1975 2.4324 -4.2281 19 1 13.1539 3.4995 -3.2712 20 1 13.3299 1.2782 -4.2280 21 16 5.0607 2.8222 0.0017 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 7.4918 -0.4223 1.4001 28 1 9.0505 -1.2767 1.3115 29 1 8.9400 0.2883 2.1526 30 1 10.8955 -0.3689 -0.0321 31 1 10.7656 1.2618 0.6695 32 1 13.9371 1.3464 -1.2011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283932603.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:56 Heat of formation + Delta-G solvation = 38.355714 kcal Electronic energy + Delta-G solvation = -15650.343635 eV Core-core repulsion = 12990.019975 eV Total energy + Delta-G solvation = -2660.323660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.15785 -34.70836 -33.24512 -32.32059 -31.73403 -27.57581 -25.79763 -23.89332 -23.41066 -21.84072 -20.91767 -19.19685 -17.30493 -16.49078 -16.33884 -15.50168 -15.37314 -14.83798 -14.71810 -14.41296 -13.48193 -13.05788 -12.84088 -12.67510 -12.42481 -12.00668 -11.89410 -11.73831 -11.43652 -11.34315 -11.28824 -10.86978 -10.72335 -10.62234 -10.52545 -10.03971 -9.62759 -9.58933 -9.48022 -9.23792 -8.48038 -8.24165 -7.33350 -6.12613 -4.15890 0.32028 0.53520 1.00462 1.21692 1.81921 1.82484 2.14946 2.73095 3.26726 3.34830 3.39786 4.38159 4.49529 4.55098 4.68528 4.98928 5.17327 5.25100 5.35526 5.39627 5.58885 5.64208 5.71097 6.00074 6.39467 6.49159 6.63260 7.39901 7.43929 7.79524 7.83949 8.18180 8.89059 9.49454 10.98230 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.032457 B = 0.003461 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.464514 B = 8088.005561 C = 8369.405909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 S 0.001 5.999 4 C 0.012 3.988 5 N -0.282 5.282 6 N -0.293 5.293 7 C 0.036 3.964 8 S 0.054 5.946 9 C -0.061 4.061 10 H 0.092 0.908 11 C -0.148 4.148 12 C 0.038 3.962 13 C -0.527 4.527 14 H 0.064 0.936 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.283 1.283 21 S 0.114 5.886 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 1.290 3.682 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.260 4.260 3 S 0.228 5.772 4 C -0.389 4.389 5 N -0.112 5.112 6 N -0.125 5.125 7 C -0.361 4.361 8 S 0.285 5.715 9 C -0.191 4.191 10 H 0.111 0.889 11 C -0.207 4.207 12 C -0.001 4.001 13 C -0.566 4.566 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.210 1.210 21 S 0.348 5.652 22 H 0.086 0.914 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.429 2.807 3.694 21.926 hybrid contribution 0.638 -1.942 -0.951 2.254 sum -20.791 0.865 2.743 20.989 Atomic orbital electron populations 1.21556 0.91456 1.03451 1.03274 1.23627 0.99906 0.95122 1.07339 1.85482 0.87786 1.12469 1.91489 1.30457 1.05444 0.96002 1.06963 1.75347 0.99315 1.20937 1.15566 1.75523 0.99707 1.17220 1.20045 1.31550 1.07914 0.94771 1.01866 1.86301 0.82766 1.15777 1.86684 1.23893 1.02465 0.91815 1.00975 0.88923 1.22100 1.01699 1.00671 0.96229 1.19125 0.83901 0.98830 0.98291 1.21282 0.92596 1.41624 1.01055 0.91771 1.24986 0.96367 0.95448 0.97244 1.69961 0.99859 1.47699 1.35498 0.86512 0.78580 0.78942 0.83955 1.19469 1.20844 1.20951 1.85469 0.93153 1.10518 1.76090 0.91424 0.90196 0.91429 0.88551 0.88567 0.92268 0.91562 0.92215 0.93835 0.95251 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.92 37.16 0.37 -0.41 16 2 C -0.11 -0.93 6.26 37.16 0.23 -0.70 16 3 S 0.00 0.01 22.16 -107.50 -2.38 -2.37 16 4 C 0.01 0.18 7.81 51.84 0.41 0.59 16 5 N -0.28 -4.81 11.62 31.11 0.36 -4.45 16 6 N -0.29 -5.50 9.96 31.11 0.31 -5.19 16 7 C 0.04 0.64 7.58 51.84 0.39 1.03 16 8 S 0.05 1.02 20.90 -107.50 -2.25 -1.23 16 9 C -0.06 -1.25 2.46 -26.73 -0.07 -1.31 16 10 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 11 C -0.15 -2.63 9.06 37.16 0.34 -2.30 16 12 C 0.04 0.91 4.45 -27.88 -0.12 0.79 16 13 C -0.53 -14.10 8.53 -34.44 -0.29 -14.40 16 14 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 S 0.11 1.65 23.39 -107.50 -2.51 -0.87 16 22 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.06 1.05 6.24 -51.93 -0.32 0.72 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -29.40 317.29 -8.91 -38.30 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -4.09 Total: -5.05 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 1.15 Total: -15.11 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 1.41 Total: -34.59 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -7.14 Total: -4.47 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.40 -8.91 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283932603.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.659 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds