Wall clock time and date at job start Tue Mar 31 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47413 * 2 1 4 4 C 1.76195 * 103.00128 * 179.97438 * 3 2 1 5 5 N 1.29644 * 125.40608 * 359.97438 * 4 3 2 6 6 N 1.37764 * 115.60653 * 179.73997 * 5 4 3 7 7 C 1.29644 * 115.61307 * 0.50339 * 6 5 4 8 8 S 1.76202 * 125.40933 * 179.79937 * 7 6 5 9 9 C 1.81401 * 102.99950 * 359.69036 * 8 7 6 10 10 H 1.08998 * 109.46875 * 55.00409 * 9 8 7 11 11 C 1.53001 * 109.47343 * 295.00268 * 9 8 7 12 12 C 1.52997 * 109.47024 * 175.00283 * 9 8 7 13 13 C 1.50706 * 109.47238 * 294.99935 * 12 9 8 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 S 1.76036 * 125.40732 * 180.02562 * 4 3 2 22 22 H 1.09005 * 109.46848 * 60.00363 * 1 2 3 23 23 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47414 * 300.00207 * 1 2 3 25 25 H 1.08997 * 109.47414 * 239.99793 * 2 1 3 26 26 H 1.09001 * 109.46466 * 119.99955 * 2 1 3 27 27 H 1.09000 * 109.46959 * 59.99878 * 11 9 8 28 28 H 1.08998 * 109.47252 * 179.97438 * 11 9 8 29 29 H 1.08998 * 109.47250 * 299.99911 * 11 9 8 30 30 H 1.09001 * 109.46832 * 175.00249 * 12 9 8 31 31 H 1.09000 * 109.47611 * 55.00546 * 12 9 8 32 32 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5116 0.0008 5 7 4.5127 0.3769 0.0017 6 7 5.8880 0.4569 -0.0035 7 6 6.3797 1.6564 0.0017 8 16 8.0957 2.0565 0.0020 9 6 8.8944 0.4277 0.0033 10 1 8.5254 -0.1585 -0.8383 11 6 8.5710 -0.2979 1.3109 12 6 10.4092 0.6024 -0.1219 13 6 10.7361 1.2057 -1.4637 14 1 9.9427 1.4413 -2.1575 15 6 12.0479 1.4568 -1.8055 16 7 13.0141 1.1694 -0.9607 17 14 12.4530 2.2052 -3.4684 18 1 11.1975 2.4324 -4.2281 19 1 13.1539 3.4995 -3.2712 20 1 13.3299 1.2782 -4.2280 21 16 5.0607 2.8222 0.0017 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 7.4918 -0.4223 1.4001 28 1 9.0505 -1.2767 1.3115 29 1 8.9400 0.2883 2.1526 30 1 10.8955 -0.3689 -0.0321 31 1 10.7656 1.2618 0.6695 32 1 13.9371 1.3464 -1.2011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283932603.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:55 Heat of formation + Delta-G solvation = 21.988004 kcal Electronic energy + Delta-G solvation = -15651.053392 eV Core-core repulsion = 12990.019975 eV Total energy + Delta-G solvation = -2661.033417 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43932 -36.53067 -34.18678 -33.83083 -33.10190 -29.44370 -27.04244 -25.31881 -24.50132 -23.12019 -22.59613 -20.45973 -18.55327 -18.52639 -17.53630 -16.74688 -16.54274 -16.43406 -15.77602 -15.66759 -14.86077 -14.66755 -14.28760 -13.70346 -13.48973 -13.37391 -13.26932 -12.98913 -12.94109 -12.66577 -12.56059 -12.44856 -12.33511 -12.19549 -11.60331 -11.55111 -11.33108 -11.19974 -11.11544 -10.67018 -10.57339 -9.27863 -8.68580 -8.22469 -6.31928 -0.83024 -0.70458 -0.19695 0.01219 0.51693 0.85736 0.99487 1.17970 1.39997 1.41930 1.54144 2.40479 3.13080 3.37855 3.91707 3.93007 3.97317 3.98351 4.10388 4.44087 4.47705 4.82589 4.87073 4.87737 4.90675 5.13301 5.21234 5.35567 5.44724 5.74569 6.12822 6.52862 6.80092 7.36984 8.89126 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.032457 B = 0.003461 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.464514 B = 8088.005561 C = 8369.405909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 S 0.036 5.964 4 C 0.010 3.990 5 N -0.309 5.309 6 N -0.314 5.314 7 C 0.018 3.982 8 S 0.041 5.959 9 C -0.055 4.055 10 H 0.080 0.920 11 C -0.138 4.138 12 C 0.046 3.954 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.280 1.280 21 S 0.161 5.839 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.011 0.989 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.130 1.978 3.219 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.261 4.261 3 S 0.263 5.737 4 C -0.389 4.389 5 N -0.140 5.140 6 N -0.145 5.145 7 C -0.380 4.380 8 S 0.271 5.729 9 C -0.185 4.185 10 H 0.098 0.902 11 C -0.197 4.197 12 C 0.007 3.993 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.781 3.219 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.205 1.205 21 S 0.395 5.605 22 H 0.092 0.908 23 H 0.115 0.885 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.021 3.498 3.231 24.488 hybrid contribution 1.144 -2.141 -0.781 2.550 sum -22.877 1.357 2.450 23.047 Atomic orbital electron populations 1.21599 0.88927 1.04803 1.03992 1.23813 1.01831 0.93521 1.06959 1.85470 0.84211 1.14106 1.89900 1.31178 1.07741 0.95524 1.04476 1.75350 0.98405 1.21873 1.18362 1.75467 1.01240 1.18166 1.19633 1.31303 1.07681 0.95971 1.03087 1.86111 0.84339 1.14330 1.88117 1.23570 1.00023 0.93077 1.01868 0.90190 1.22007 1.01851 1.00772 0.95023 1.18894 0.86623 0.97040 0.96775 1.21593 0.92711 1.41301 1.01911 0.91862 1.25808 0.96363 0.95992 1.00761 1.70069 1.00242 1.49021 1.37385 0.85522 0.78462 0.78196 0.79719 1.18795 1.20265 1.20528 1.85259 0.91279 1.08793 1.75132 0.90759 0.88495 0.90634 0.89083 0.88889 0.91997 0.90912 0.91523 0.95876 0.97034 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.92 71.98 0.71 -0.37 16 2 C -0.11 -1.63 6.26 71.98 0.45 -1.18 16 3 S 0.04 0.66 22.16 -56.49 -1.25 -0.59 16 4 C 0.01 0.28 7.81 130.57 1.02 1.30 16 5 N -0.31 -10.24 11.62 -55.48 -0.64 -10.88 16 6 N -0.31 -11.66 9.96 -55.48 -0.55 -12.22 16 7 C 0.02 0.62 7.58 130.57 0.99 1.61 16 8 S 0.04 1.56 20.90 -56.49 -1.18 0.38 16 9 C -0.05 -2.29 2.46 30.59 0.08 -2.22 16 10 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 11 C -0.14 -4.94 9.06 71.98 0.65 -4.29 16 12 C 0.05 2.28 4.45 29.85 0.13 2.41 16 13 C -0.54 -29.24 8.53 25.60 0.22 -29.03 16 14 H 0.06 3.39 7.60 -2.91 -0.02 3.37 16 15 C 0.01 0.53 5.46 84.65 0.46 0.99 16 16 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 17 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 S 0.16 4.41 23.39 -56.49 -1.32 3.09 16 22 H 0.07 0.53 8.14 -2.38 -0.02 0.52 16 23 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 2.19 6.24 -2.39 -0.01 2.18 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.02 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -63.16 317.29 3.19 -59.97 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: 1.12 Total: -0.46 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.72 Total: -30.76 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -0.91 Total: -77.20 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -3.75 Total: 2.88 kcal Total: -63.16 3.19 -59.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283932603.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.956 kcal (2) G-P(sol) polarization free energy of solvation -63.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds