Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 O 1.42895 * 109.47000 * 240.00331 * 2 1 3 5 5 C 1.35695 * 116.99984 * 269.99580 * 4 2 1 6 6 N 1.29411 * 125.38919 * 0.02850 * 5 4 2 7 7 N 1.37765 * 115.66388 * 179.97438 * 6 5 4 8 8 C 1.29691 * 115.58252 * 359.97438 * 7 6 5 9 9 S 1.76203 * 125.43117 * 180.02562 * 8 7 6 10 10 C 1.81407 * 102.99897 * 0.02562 * 9 8 7 11 11 C 1.52994 * 109.47019 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47680 * 60.00076 * 11 10 9 13 13 O 1.42904 * 109.47108 * 299.99732 * 11 10 9 14 14 C 1.50709 * 109.46949 * 180.02562 * 11 10 9 15 15 H 1.08003 * 119.99678 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99915 * 179.97438 * 14 11 10 17 17 N 1.31508 * 119.99873 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 119.99901 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47007 * 89.99982 * 18 16 14 20 20 H 1.48500 * 109.47370 * 210.00170 * 18 16 14 21 21 H 1.48511 * 109.47158 * 330.00381 * 18 16 14 22 22 S 1.76035 * 125.39183 * 179.72016 * 5 4 2 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47109 * 300.00147 * 10 9 8 31 31 H 1.09001 * 109.46755 * 59.99887 * 10 9 8 32 32 H 0.96698 * 114.00158 * 300.00207 * 13 11 10 33 33 H 0.96998 * 119.99721 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2118 -2.0110 -1.0653 6 7 2.0114 -2.7215 -0.0024 7 7 2.2857 -4.0662 -0.1231 8 6 2.7095 -4.4490 -1.2875 9 16 3.1349 -6.1014 -1.7272 10 6 2.8275 -7.0232 -0.1954 11 6 3.1556 -8.5013 -0.4151 12 1 4.2037 -8.6031 -0.6962 13 8 2.3299 -9.0225 -1.4585 14 6 2.8996 -9.2673 0.8573 15 1 2.5386 -8.7514 1.7348 16 6 3.1253 -10.6268 0.9009 17 7 3.5644 -11.2550 -0.1678 18 14 2.8073 -11.5762 2.4778 19 1 1.4033 -12.0599 2.4898 20 1 3.7312 -12.7365 2.5519 21 1 3.0345 -10.6871 3.6454 22 16 2.7856 -3.0556 -2.3609 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.4576 -6.6260 0.6004 31 1 1.7794 -6.9212 0.0859 32 1 1.3820 -8.9647 -1.2760 33 1 3.7235 -12.2113 -0.1370 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287599004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = -30.978209 kcal Electronic energy + Delta-G solvation = -17837.740918 eV Core-core repulsion = 14731.657842 eV Total energy + Delta-G solvation = -3106.083076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20494 -38.46976 -36.02686 -33.63639 -32.25606 -31.12650 -29.78414 -27.66420 -25.52233 -25.32597 -23.16929 -21.29855 -20.52187 -19.62097 -17.90873 -17.31804 -16.35004 -16.20847 -15.18368 -14.75922 -14.68727 -14.40499 -14.27683 -13.90567 -13.79176 -13.30114 -12.94061 -12.76607 -12.52258 -12.48232 -11.75847 -11.49521 -11.33010 -11.31220 -11.03239 -10.95337 -10.78751 -10.39435 -10.16948 -10.04370 -9.97680 -9.30473 -9.28630 -8.70381 -8.41382 -7.49359 -6.13399 -4.33527 0.16925 0.67674 1.05750 1.48287 2.17621 2.63397 2.96787 3.23300 3.30633 3.34051 4.15902 4.31396 4.44285 4.52938 4.80671 5.05267 5.14019 5.15923 5.30938 5.37449 5.43978 5.68943 5.73086 5.81629 5.90183 6.09090 6.56304 6.58527 7.44534 7.70412 7.80797 7.94928 8.67650 9.19593 9.42686 10.90660 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.031597 B = 0.003213 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.950481 B = 8712.569746 C = 9357.003461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.272 6.272 5 C 0.228 3.772 6 N -0.342 5.342 7 N -0.268 5.268 8 C 0.023 3.977 9 S 0.026 5.974 10 C -0.119 4.119 11 C 0.245 3.755 12 H 0.069 0.931 13 O -0.559 6.559 14 C -0.570 4.570 15 H 0.061 0.939 16 C 0.082 3.918 17 N -0.856 5.856 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 S 0.126 5.874 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.350 0.650 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 21.000 -3.028 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.176 6.176 5 C -0.101 4.101 6 N -0.185 5.185 7 N -0.100 5.100 8 C -0.374 4.374 9 S 0.256 5.744 10 C -0.269 4.269 11 C 0.185 3.815 12 H 0.087 0.913 13 O -0.362 6.362 14 C -0.610 4.610 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.491 5.491 18 Si 0.723 3.277 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 S 0.361 5.639 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.226 20.555 -4.215 21.101 hybrid contribution -1.213 0.179 2.569 2.847 sum -3.439 20.734 -1.646 21.082 Atomic orbital electron populations 1.22258 0.94200 1.03423 1.03056 1.22656 0.95020 0.93209 0.87103 1.21916 1.02265 0.93081 1.03378 1.86375 1.80436 1.11965 1.38832 1.27440 0.98121 0.90687 0.93882 1.75208 1.23055 0.98378 1.21892 1.75592 1.16294 1.01972 1.16178 1.31221 1.04019 1.06479 0.95668 1.86172 1.79003 0.87072 1.22145 1.25136 1.05869 1.01528 0.94402 1.19272 0.92606 0.81410 0.88201 0.91317 1.86595 1.18904 1.85438 1.45233 1.21472 1.48913 0.93305 0.97264 0.92041 1.25028 0.93652 0.97645 0.96257 1.70068 1.41779 1.09447 1.27769 0.86552 0.78292 0.79514 0.83355 1.20373 1.20978 1.19657 1.85635 1.69301 0.96237 1.12730 0.91680 0.90510 0.91582 0.89171 0.89946 0.91505 0.91306 0.88843 0.89391 0.80570 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.53 37.16 0.35 -1.13 16 2 C 0.08 0.77 3.22 -26.73 -0.09 0.68 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 4 O -0.27 -3.32 9.85 -18.79 -0.19 -3.51 16 5 C 0.23 3.28 8.40 51.74 0.43 3.71 16 6 N -0.34 -5.72 10.93 30.17 0.33 -5.39 16 7 N -0.27 -4.89 11.62 31.12 0.36 -4.53 16 8 C 0.02 0.38 7.82 51.86 0.41 0.79 16 9 S 0.03 0.45 21.81 -107.50 -2.34 -1.90 16 10 C -0.12 -2.38 5.18 37.15 0.19 -2.18 16 11 C 0.25 5.87 2.88 -27.88 -0.08 5.79 16 12 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 13 O -0.56 -13.50 12.32 -35.23 -0.43 -13.93 16 14 C -0.57 -14.94 8.76 -34.44 -0.30 -15.24 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 17 N -0.86 -24.33 12.84 55.43 0.71 -23.62 16 18 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 S 0.13 1.71 23.39 -107.50 -2.51 -0.81 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.99 7.26 -51.93 -0.38 0.61 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 31 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.35 7.48 9.04 45.56 0.41 7.90 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -29.78 320.02 -6.41 -36.18 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.31 Total: 3.27 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 1.18 Total: -6.13 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 1.40 Total: -33.53 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.62 Total: -17.44 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -4.86 Total: -2.71 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.78 -6.41 -36.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287599004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.205 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds