Wall clock time and date at job start Tue Mar 31 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46998 * 88.13527 * 3 2 1 5 5 N 1.46504 * 109.46995 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00100 * 269.99380 * 5 4 3 7 7 C 1.50696 * 109.47418 * 270.00371 * 6 5 4 8 8 H 1.08006 * 120.00005 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00362 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99735 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00462 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46798 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47028 * 119.99739 * 11 9 7 14 14 H 1.48500 * 109.47091 * 240.00232 * 11 9 7 15 15 C 1.34779 * 119.99839 * 89.99782 * 5 4 3 16 16 O 1.21282 * 119.99904 * 180.02562 * 15 5 4 17 17 C 1.50706 * 120.00112 * 359.97438 * 15 5 4 18 18 H 1.09000 * 115.55924 * 325.68624 * 17 15 5 19 19 C 1.53002 * 117.49668 * 180.02562 * 17 15 5 20 20 C 1.53000 * 60.02940 * 252.51929 * 19 17 15 21 21 Cl 1.80305 * 117.49532 * 107.48015 * 20 19 17 22 22 Cl 1.80300 * 117.50139 * 252.49834 * 20 19 17 23 23 H 1.09000 * 109.47280 * 328.13348 * 3 2 1 24 24 H 1.09009 * 109.47226 * 208.12955 * 3 2 1 25 25 H 1.08999 * 109.47711 * 59.99538 * 4 3 2 26 26 H 1.09007 * 109.46738 * 299.99231 * 4 3 2 27 27 H 1.09007 * 109.46962 * 30.00370 * 6 5 4 28 28 H 1.09003 * 109.46857 * 149.99772 * 6 5 4 29 29 H 0.97008 * 119.99811 * 179.97438 * 10 9 7 30 30 H 1.09002 * 117.49918 * 145.01964 * 19 17 15 31 31 H 1.09002 * 117.49754 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0461 -1.4418 5 7 4.5830 -0.0448 -1.4418 6 6 5.3144 1.2239 -1.4834 7 6 5.5652 1.6124 -2.9177 8 1 5.2151 0.9775 -3.7183 9 6 6.2414 2.7782 -3.2080 10 7 6.6673 3.5515 -2.2332 11 14 6.5529 3.2595 -4.9859 12 1 5.9778 2.2278 -5.8859 13 1 5.9137 4.5708 -5.2630 14 1 8.0155 3.3619 -5.2220 15 6 5.2579 -1.2108 -1.4036 16 8 6.4707 -1.2098 -1.4031 17 6 4.5055 -2.5159 -1.3603 18 1 3.5672 -2.4996 -0.8058 19 6 5.3287 -3.8048 -1.3175 20 6 4.5819 -3.4170 -2.5953 21 17 5.5653 -2.8356 -3.9903 22 17 3.1126 -4.3705 -3.0228 23 1 2.9717 -0.8719 0.5425 24 1 2.9709 0.9072 0.4845 25 1 2.7542 0.8265 -1.9844 26 1 2.7551 -0.9526 -1.9263 27 1 4.7246 1.9995 -0.9947 28 1 6.2669 1.1112 -0.9655 29 1 7.1434 4.3717 -2.4374 30 1 4.9318 -4.6365 -0.7353 31 1 6.4145 -3.7088 -1.3202 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299356040.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:13 Heat of formation + Delta-G solvation = -11.907473 kcal Electronic energy + Delta-G solvation = -18648.103570 eV Core-core repulsion = 15402.926956 eV Total energy + Delta-G solvation = -3245.176614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.10608 -38.42914 -37.91069 -37.04849 -36.73464 -36.04669 -34.79251 -32.17010 -29.49696 -26.20341 -25.31762 -23.44332 -23.23853 -19.97659 -18.84571 -18.52379 -18.29751 -17.30814 -16.74855 -16.43538 -15.74828 -15.61663 -15.36806 -14.65684 -14.33661 -14.25074 -13.88975 -13.64600 -13.53976 -13.24233 -13.10067 -12.96450 -12.88925 -12.69465 -12.52440 -12.23574 -12.18183 -11.91044 -11.89517 -11.64411 -11.58041 -11.00004 -10.61064 -10.57355 -9.48784 -8.17417 -6.27527 0.09025 1.08172 1.37202 1.40137 1.43404 1.50565 1.75637 1.85930 2.19587 2.43758 2.49057 3.08928 3.12691 3.15764 3.36271 3.68533 4.05513 4.11258 4.18074 4.54550 4.63360 4.83714 4.84056 5.06496 5.12858 5.36252 5.61707 5.87278 6.14718 6.61836 6.69659 6.82809 7.32375 7.47277 8.89504 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.006732 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.937447 B = 4158.078465 C = 5496.604501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.244 3.756 3 C -0.038 4.038 4 C 0.111 3.889 5 N -0.589 5.589 6 C 0.261 3.739 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.948 3.052 12 H -0.272 1.272 13 H -0.273 1.273 14 H -0.285 1.285 15 C 0.532 3.468 16 O -0.563 6.563 17 C -0.158 4.158 18 H 0.180 0.820 19 C -0.093 4.093 20 C 0.008 3.992 21 Cl -0.106 7.106 22 Cl -0.080 7.080 23 H 0.142 0.858 24 H 0.125 0.875 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.038 0.962 28 H 0.010 0.990 29 H 0.265 0.735 30 H 0.169 0.831 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -15.045 3.973 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.073 4.073 3 C -0.079 4.079 4 C -0.014 4.014 5 N -0.318 5.318 6 C 0.141 3.859 7 C -0.572 4.572 8 H 0.069 0.931 9 C -0.184 4.184 10 N -0.564 5.564 11 Si 0.774 3.226 12 H -0.197 1.197 13 H -0.198 1.198 14 H -0.211 1.211 15 C 0.319 3.681 16 O -0.442 6.442 17 C -0.180 4.180 18 H 0.197 0.803 19 C -0.130 4.130 20 C -0.044 4.044 21 Cl -0.079 7.079 22 Cl -0.053 7.053 23 H 0.159 0.841 24 H 0.143 0.857 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.186 0.814 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.797 -14.873 3.848 17.228 hybrid contribution 0.772 0.836 -1.302 1.729 sum -7.024 -14.037 2.546 15.902 Atomic orbital electron populations 1.81258 1.14446 1.10991 1.09933 1.29151 0.94968 0.91384 0.91785 1.19871 0.80085 1.08534 0.99440 1.21519 0.79208 1.05095 0.95537 1.47947 1.06669 1.06477 1.70743 1.18850 0.91671 0.79874 0.95530 1.21739 1.35974 1.05890 0.93560 0.93114 1.25597 0.95434 0.96582 1.00745 1.70011 1.39368 1.14084 1.32938 0.85661 0.77745 0.78292 0.80929 1.19655 1.19844 1.21072 1.19716 0.87082 0.84816 0.76452 1.90699 1.15531 1.87265 1.50671 1.23459 1.04835 0.90906 0.98807 0.80267 1.24114 1.01215 0.96447 0.91229 1.26622 0.90891 1.02330 0.84587 1.98804 1.71150 1.89071 1.48843 1.98752 1.39040 1.73015 1.94461 0.84072 0.85718 0.89717 0.88477 0.94398 0.97165 0.92621 0.81362 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.18 18.54 20.00 0.37 -12.81 16 2 C 0.24 5.07 15.43 89.44 1.38 6.45 16 3 C -0.04 -0.63 5.91 28.79 0.17 -0.46 16 4 C 0.11 2.66 5.00 86.38 0.43 3.09 16 5 N -0.59 -20.13 2.46 -826.12 -2.03 -22.16 16 6 C 0.26 12.12 5.16 85.63 0.44 12.56 16 7 C -0.53 -28.29 9.39 25.60 0.24 -28.05 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 9 C 0.02 0.85 5.46 84.65 0.46 1.32 16 10 N -0.92 -52.74 13.29 21.44 0.28 -52.45 16 11 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 15 C 0.53 17.82 6.54 87.66 0.57 18.39 16 16 O -0.56 -24.41 15.67 -3.03 -0.05 -24.46 16 17 C -0.16 -3.40 4.64 -11.51 -0.05 -3.45 16 18 H 0.18 2.35 6.48 -2.39 -0.02 2.34 16 19 C -0.09 -1.66 9.72 30.60 0.30 -1.36 16 20 C 0.01 0.18 3.62 30.62 0.11 0.29 16 21 Cl -0.11 -3.33 28.18 -2.72 -0.08 -3.40 16 22 Cl -0.08 -1.55 29.29 -2.72 -0.08 -1.63 16 23 H 0.14 1.44 7.45 -2.39 -0.02 1.42 16 24 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 25 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 26 H 0.10 1.93 6.64 -2.38 -0.02 1.91 16 27 H 0.04 1.74 8.07 -2.38 -0.02 1.72 16 28 H 0.01 0.55 7.42 -2.39 -0.02 0.54 16 29 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 30 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.12 2.61 7.67 -2.39 -0.02 2.60 16 Total: -1.00 -70.88 313.37 5.67 -65.21 By element: Atomic # 1 Polarization: -4.09 SS G_CDS: 1.17 Total: -2.92 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 4.05 Total: 8.77 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -1.37 Total: -87.43 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -4.87 SS G_CDS: -0.16 Total: -5.03 kcal Total: -70.88 5.67 -65.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299356040.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.301 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds