Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00512 * 2 1 4 4 H 1.48502 * 109.47320 * 270.00461 * 3 2 1 5 5 H 1.48498 * 109.47071 * 30.00220 * 3 2 1 6 6 H 1.48503 * 109.47088 * 150.00195 * 3 2 1 7 7 C 1.37880 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00068 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99958 * 179.97438 * 10 9 7 12 12 O 1.21508 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.48218 * 120.00109 * 180.02562 * 11 10 9 14 14 N 1.31923 * 119.25137 * 0.02562 * 13 11 10 15 15 C 1.33224 * 121.32217 * 180.02562 * 14 13 11 16 16 C 1.40847 * 120.97436 * 179.97438 * 15 14 13 17 17 C 1.35974 * 119.74159 * 180.02562 * 16 15 14 18 18 C 1.39450 * 121.09312 * 359.97438 * 17 16 15 19 19 C 1.36115 * 120.92255 * 0.02894 * 18 17 16 20 20 C 1.40453 * 119.65217 * 359.95154 * 19 18 17 21 21 C 1.40665 * 121.27317 * 180.02562 * 20 19 18 22 22 C 1.36677 * 118.23852 * 180.29965 * 21 20 19 23 23 Cl 1.73602 * 120.10634 * 179.72449 * 22 21 20 24 24 H 0.97007 * 119.99923 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47307 * 59.99871 * 9 7 2 26 26 H 1.09004 * 109.47374 * 299.99995 * 9 7 2 27 27 H 0.97003 * 119.99826 * 0.02562 * 10 9 7 28 28 H 1.08004 * 120.12468 * 0.05137 * 16 15 14 29 29 H 1.08004 * 119.45381 * 180.02562 * 17 16 15 30 30 H 1.08006 * 119.54094 * 180.02562 * 18 17 16 31 31 H 1.08000 * 120.17755 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.87666 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 1.7535 -4.8834 -0.0015 12 8 0.5588 -5.1054 -0.0006 13 6 2.7165 -6.0101 -0.0021 14 7 4.0103 -5.7522 -0.0025 15 6 4.9119 -6.7330 -0.0036 16 6 6.2915 -6.4493 -0.0046 17 6 7.1901 -7.4698 -0.0062 18 6 6.7697 -8.7995 -0.0065 19 6 5.4454 -9.1144 -0.0057 20 6 4.4870 -8.0877 -0.0035 21 6 3.1099 -8.3742 -0.0021 22 6 2.2315 -7.3272 -0.0063 23 17 0.5212 -7.6253 -0.0120 24 1 -0.4850 0.8401 0.0004 25 1 0.6238 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 3.1565 -3.4355 -0.0021 28 1 6.6343 -5.4251 -0.0036 29 1 8.2469 -7.2470 -0.0065 30 1 7.5051 -9.5905 -0.0074 31 1 5.1333 -10.1483 -0.0063 32 1 2.7561 -9.3947 -0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334327498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = 17.539760 kcal Electronic energy + Delta-G solvation = -19406.958449 eV Core-core repulsion = 16165.491612 eV Total energy + Delta-G solvation = -3241.466836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12149 -38.84893 -37.08756 -36.28003 -34.24918 -33.64579 -32.28812 -30.79736 -30.15598 -27.40034 -25.22737 -23.86037 -22.53664 -22.37474 -20.20375 -18.47236 -18.01929 -17.58539 -16.19702 -15.37857 -15.19035 -15.18343 -14.91266 -14.65905 -14.13163 -14.00679 -13.93567 -13.50823 -12.83203 -12.52745 -11.99934 -11.95809 -11.85074 -11.83950 -11.50704 -11.19955 -10.89054 -10.85002 -10.42978 -10.26678 -10.06102 -9.36868 -8.89640 -8.87534 -8.70267 -8.48831 -7.85743 -6.13855 -4.20207 -0.00305 0.37817 1.67842 2.11283 2.36143 3.27380 3.33190 3.36028 3.47747 3.65937 4.04213 4.10841 4.27790 4.36947 4.47876 4.59669 4.73840 4.87503 4.99004 5.22570 5.23740 5.43344 5.47870 5.62952 5.79965 6.00583 6.11502 6.16397 6.49286 7.28625 7.37771 7.52251 7.52438 7.71865 7.98473 8.61529 8.76867 9.04407 9.45704 10.96402 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.004332 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.634437 B = 6461.332004 C = 8035.816183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.684 5.684 11 C 0.541 3.459 12 O -0.524 6.524 13 C 0.138 3.862 14 N -0.428 5.428 15 C 0.123 3.877 16 C -0.081 4.081 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.099 4.099 20 C -0.084 4.084 21 C -0.062 4.062 22 C -0.048 4.048 23 Cl -0.013 7.013 24 H 0.266 0.734 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.401 0.599 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.191 -19.563 -0.015 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.332 5.332 11 C 0.322 3.678 12 O -0.400 6.400 13 C -0.017 4.017 14 N -0.139 5.139 15 C -0.001 4.001 16 C -0.099 4.099 17 C -0.125 4.125 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.086 4.086 21 C -0.089 4.089 22 C -0.078 4.078 23 Cl 0.016 6.984 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.235 0.765 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.345 -18.690 -0.010 22.399 hybrid contribution 0.500 0.076 -0.010 0.505 sum 12.845 -18.615 -0.020 22.616 Atomic orbital electron populations 1.69974 1.06089 1.27293 1.48978 1.24935 0.94909 0.99410 0.94688 0.86405 0.79657 0.82584 0.78222 1.20458 1.21029 1.19699 1.21223 0.93396 0.90298 1.53138 0.91752 1.19227 0.88246 0.81693 0.98071 1.46404 1.12133 1.05254 1.69380 1.17797 0.87064 0.82954 0.79974 1.90849 1.14623 1.84031 1.50486 1.21764 0.90812 0.93031 0.96115 1.68068 1.00675 1.35079 1.10094 1.18990 0.94053 0.88100 0.98944 1.20935 0.89871 1.00793 0.98325 1.20946 1.00164 0.92386 0.99023 1.20987 0.95911 0.96791 0.98990 1.20956 0.92624 0.98370 0.99827 1.18862 0.93550 0.94558 1.01677 1.21375 0.91120 0.99336 0.97066 1.21611 0.88759 0.94129 1.03344 1.98431 1.08370 1.95572 1.96035 0.92460 0.95071 0.95058 0.76485 0.84031 0.84979 0.85289 0.84928 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 9 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 10 N -0.68 -15.49 5.54 -62.31 -0.34 -15.83 16 11 C 0.54 11.68 7.80 -12.16 -0.09 11.59 16 12 O -0.52 -12.50 13.85 5.36 0.07 -12.43 16 13 C 0.14 2.47 6.75 -82.93 -0.56 1.91 16 14 N -0.43 -7.03 9.47 -7.52 -0.07 -7.10 16 15 C 0.12 1.67 6.61 -84.85 -0.56 1.11 16 16 C -0.08 -0.87 9.99 -39.41 -0.39 -1.26 16 17 C -0.11 -0.84 9.94 -39.94 -0.40 -1.24 16 18 C -0.11 -0.79 9.95 -39.89 -0.40 -1.19 16 19 C -0.10 -0.83 9.77 -39.51 -0.39 -1.22 16 20 C -0.08 -0.98 5.75 -106.72 -0.61 -1.59 16 21 C -0.06 -0.74 9.66 -39.23 -0.38 -1.12 16 22 C -0.05 -0.74 6.32 -39.35 -0.25 -0.99 16 23 Cl -0.01 -0.21 25.92 -51.86 -1.34 -1.56 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.40 8.34 7.62 -40.82 -0.31 8.03 16 28 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 30 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -32.12 301.72 -8.70 -40.82 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -2.80 Total: 1.91 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -4.47 Total: -0.95 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.32 Total: -48.41 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.34 Total: -1.56 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.12 -8.70 -40.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334327498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.358 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds