Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99998 * 2 1 4 4 H 1.48505 * 109.47034 * 240.00188 * 3 2 1 5 5 H 1.48500 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46876 * 120.00383 * 3 2 1 7 7 C 1.37875 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00410 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99646 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46828 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99451 * 179.97438 * 10 9 7 12 12 O 1.21601 * 120.00627 * 359.97438 * 11 10 9 13 13 C 1.47471 * 119.99986 * 180.02562 * 11 10 9 14 14 C 1.38756 * 120.37197 * 354.04701 * 13 11 10 15 15 C 1.38869 * 120.55794 * 179.97438 * 14 13 11 16 16 C 1.36374 * 121.22583 * 0.07177 * 15 14 13 17 17 Cl 1.73605 * 119.91184 * 180.22886 * 16 15 14 18 18 C 1.40860 * 120.17385 * 359.95076 * 16 15 14 19 19 N 1.33662 * 120.94441 * 180.02562 * 18 16 15 20 20 C 1.31069 * 121.34129 * 179.97438 * 19 18 16 21 21 C 1.39336 * 121.70522 * 0.02562 * 20 19 18 22 22 C 1.36684 * 119.85600 * 359.97438 * 21 20 19 23 23 C 1.40457 * 118.17020 * 0.02562 * 22 21 20 24 24 H 0.97004 * 120.00163 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47058 * 59.99391 * 9 7 2 26 26 H 1.08999 * 109.46591 * 300.00196 * 9 7 2 27 27 H 0.96998 * 120.00273 * 0.02562 * 10 9 7 28 28 H 1.08008 * 119.72306 * 0.02562 * 14 13 11 29 29 H 1.08001 * 119.38733 * 180.02562 * 15 14 13 30 30 H 1.08006 * 119.14939 * 179.97438 * 20 19 18 31 31 H 1.07998 * 120.07185 * 180.02562 * 21 20 19 32 32 H 1.07998 * 120.91174 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5582 -5.1056 0.0009 13 6 2.7120 -6.0042 0.0006 14 6 4.0729 -5.7638 -0.1236 15 6 4.9787 -6.8165 -0.1230 16 6 4.5606 -8.1089 -0.0027 17 17 5.7231 -9.3982 0.0000 18 6 3.1884 -8.4001 0.1254 19 7 2.7616 -9.6611 0.2448 20 6 1.4867 -9.9409 0.3648 21 6 0.5154 -8.9419 0.3735 22 6 0.8860 -7.6316 0.2553 23 6 2.2535 -7.3382 0.1269 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5566 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 3.1567 -3.4354 -0.0002 28 1 4.4309 -4.7494 -0.2207 29 1 6.0339 -6.6077 -0.2204 30 1 1.1811 -10.9726 0.4586 31 1 -0.5278 -9.2023 0.4744 32 1 0.1475 -6.8436 0.2604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334475069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = 12.075574 kcal Electronic energy + Delta-G solvation = -19478.639551 eV Core-core repulsion = 16236.935770 eV Total energy + Delta-G solvation = -3241.703781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09565 -38.94365 -37.34826 -36.29844 -34.55624 -33.14440 -32.55244 -30.75958 -30.22897 -27.31724 -24.73382 -23.81311 -23.49661 -22.04875 -20.28367 -18.39752 -17.79563 -17.09555 -16.73509 -15.77372 -15.39756 -15.04097 -14.98998 -14.69681 -14.25186 -14.09525 -13.60968 -13.20798 -12.91873 -12.59004 -12.49733 -12.10494 -12.08348 -11.67156 -11.33119 -11.07134 -10.96432 -10.93795 -10.40252 -10.28800 -9.97981 -9.52163 -9.02547 -9.01002 -8.85729 -8.36582 -8.01189 -6.25383 -4.33327 -0.02640 0.63522 1.68729 1.94285 2.50154 3.20286 3.25528 3.26567 3.46349 3.73764 4.01579 4.03783 4.27244 4.49708 4.69885 4.77431 4.88606 4.97588 5.11246 5.16345 5.21759 5.45238 5.66233 5.71587 5.87971 6.02376 6.24748 6.39882 6.60802 7.14886 7.21927 7.37246 7.52621 7.72754 7.85023 8.38589 8.61367 8.84794 9.33361 10.84622 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.003723 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.005757 B = 7518.167090 C = 8629.882073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.696 5.696 11 C 0.542 3.458 12 O -0.546 6.546 13 C -0.090 4.090 14 C -0.077 4.077 15 C -0.097 4.097 16 C 0.000 4.000 17 Cl -0.048 7.048 18 C 0.124 3.876 19 N -0.472 5.472 20 C 0.135 3.865 21 C -0.181 4.181 22 C -0.052 4.052 23 C -0.060 4.060 24 H 0.268 0.732 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.392 0.608 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 -16.453 0.297 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.343 5.343 11 C 0.327 3.673 12 O -0.427 6.427 13 C -0.095 4.095 14 C -0.097 4.097 15 C -0.117 4.117 16 C -0.028 4.028 17 Cl -0.018 7.018 18 C 0.002 3.998 19 N -0.180 5.180 20 C -0.037 4.037 21 C -0.201 4.201 22 C -0.077 4.077 23 C -0.064 4.064 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.226 0.774 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.664 -17.140 0.282 18.778 hybrid contribution 0.412 1.520 -0.006 1.574 sum 8.075 -15.621 0.276 17.587 Atomic orbital electron populations 1.69950 1.06131 1.27609 1.48422 1.24933 0.94922 0.99482 0.94483 0.86459 0.79440 0.82180 0.78765 1.19987 1.21005 1.19995 1.21149 0.93266 0.90312 1.53914 0.91842 1.19229 0.88201 0.81611 0.98172 1.46481 1.11553 1.05811 1.70442 1.17987 0.87736 0.83176 0.78369 1.90517 1.16276 1.83794 1.52122 1.20333 0.94151 0.93337 1.01633 1.21405 0.91603 0.99754 0.96922 1.20742 1.01222 0.90041 0.99725 1.20649 0.88525 0.89927 1.03664 1.98369 1.56947 1.50107 1.96415 1.18404 0.91903 0.89402 1.00083 1.68070 1.17856 1.19004 1.13057 1.23028 0.87934 1.00154 0.92564 1.22106 1.01546 0.93772 1.02656 1.22808 0.96022 0.98695 0.90136 1.18555 0.94575 0.92243 1.00980 0.92256 0.95003 0.95027 0.77367 0.83728 0.83646 0.82255 0.84205 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.29 55.43 0.74 -24.38 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.17 9.28 -34.44 -0.32 -14.49 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 9 C 0.25 6.20 5.43 -5.19 -0.03 6.17 16 10 N -0.70 -13.73 5.50 -62.55 -0.34 -14.07 16 11 C 0.54 10.34 7.72 -12.50 -0.10 10.24 16 12 O -0.55 -11.88 13.40 5.28 0.07 -11.81 16 13 C -0.09 -1.41 5.90 -104.66 -0.62 -2.03 16 14 C -0.08 -0.96 9.51 -39.16 -0.37 -1.33 16 15 C -0.10 -1.09 9.68 -40.02 -0.39 -1.47 16 16 C 0.00 0.00 6.34 -39.26 -0.25 -0.24 16 17 Cl -0.05 -0.56 28.49 -51.86 -1.48 -2.04 16 18 C 0.12 1.82 6.60 -84.84 -0.56 1.26 16 19 N -0.47 -6.56 9.80 -10.97 -0.11 -6.67 16 20 C 0.14 1.53 11.15 -17.47 -0.19 1.34 16 21 C -0.18 -2.10 10.04 -39.73 -0.40 -2.50 16 22 C -0.05 -0.76 9.29 -39.31 -0.37 -1.13 16 23 C -0.06 -0.94 5.76 -106.54 -0.61 -1.55 16 24 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.39 6.50 6.39 -40.82 -0.26 6.24 16 28 H 0.15 1.47 6.42 -52.48 -0.34 1.13 16 29 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.19 3.06 4.96 -52.51 -0.26 2.80 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -30.74 297.62 -8.46 -39.20 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -2.51 Total: 4.26 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.30 Total: -4.06 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.29 Total: -45.13 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.74 -8.46 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334475069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.280 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds