Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99998 * 2 1 4 4 H 1.48505 * 109.47034 * 240.00188 * 3 2 1 5 5 H 1.48500 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46876 * 120.00383 * 3 2 1 7 7 C 1.37875 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00410 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99646 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46828 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99451 * 179.97438 * 10 9 7 12 12 O 1.21601 * 120.00627 * 359.97438 * 11 10 9 13 13 C 1.47471 * 119.99986 * 180.02562 * 11 10 9 14 14 C 1.38756 * 120.37197 * 354.04701 * 13 11 10 15 15 C 1.38869 * 120.55794 * 179.97438 * 14 13 11 16 16 C 1.36374 * 121.22583 * 0.07177 * 15 14 13 17 17 Cl 1.73605 * 119.91184 * 180.22886 * 16 15 14 18 18 C 1.40860 * 120.17385 * 359.95076 * 16 15 14 19 19 N 1.33662 * 120.94441 * 180.02562 * 18 16 15 20 20 C 1.31069 * 121.34129 * 179.97438 * 19 18 16 21 21 C 1.39336 * 121.70522 * 0.02562 * 20 19 18 22 22 C 1.36684 * 119.85600 * 359.97438 * 21 20 19 23 23 C 1.40457 * 118.17020 * 0.02562 * 22 21 20 24 24 H 0.97004 * 120.00163 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47058 * 59.99391 * 9 7 2 26 26 H 1.08999 * 109.46591 * 300.00196 * 9 7 2 27 27 H 0.96998 * 120.00273 * 0.02562 * 10 9 7 28 28 H 1.08008 * 119.72306 * 0.02562 * 14 13 11 29 29 H 1.08001 * 119.38733 * 180.02562 * 15 14 13 30 30 H 1.08006 * 119.14939 * 179.97438 * 20 19 18 31 31 H 1.07998 * 120.07185 * 180.02562 * 21 20 19 32 32 H 1.07998 * 120.91174 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5582 -5.1056 0.0009 13 6 2.7120 -6.0042 0.0006 14 6 4.0729 -5.7638 -0.1236 15 6 4.9787 -6.8165 -0.1230 16 6 4.5606 -8.1089 -0.0027 17 17 5.7231 -9.3982 0.0000 18 6 3.1884 -8.4001 0.1254 19 7 2.7616 -9.6611 0.2448 20 6 1.4867 -9.9409 0.3648 21 6 0.5154 -8.9419 0.3735 22 6 0.8860 -7.6316 0.2553 23 6 2.2535 -7.3382 0.1269 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5566 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 3.1567 -3.4354 -0.0002 28 1 4.4309 -4.7494 -0.2207 29 1 6.0339 -6.6077 -0.2204 30 1 1.1811 -10.9726 0.4586 31 1 -0.5278 -9.2023 0.4744 32 1 0.1475 -6.8436 0.2604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334475069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = -7.905548 kcal Electronic energy + Delta-G solvation = -19479.505997 eV Core-core repulsion = 16236.935770 eV Total energy + Delta-G solvation = -3242.570228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18601 -40.38897 -38.35466 -37.32266 -36.32980 -34.45670 -34.22031 -31.75119 -31.45509 -29.14151 -25.92791 -25.14015 -24.64859 -23.60255 -21.74906 -19.66386 -18.95557 -18.24187 -18.13146 -17.35860 -16.92710 -16.40777 -16.36625 -15.95590 -15.55557 -15.27036 -14.92015 -14.32718 -14.15538 -14.00862 -13.92187 -13.61277 -13.53868 -12.91309 -12.69294 -12.65269 -12.42939 -12.22853 -11.90928 -11.51400 -11.31433 -11.24626 -10.80216 -10.34244 -9.99127 -9.97705 -9.29585 -8.28879 -6.45427 -1.09336 -0.34477 0.58290 0.95827 1.44533 1.45275 1.48697 1.56660 2.14758 2.21439 2.45134 2.94969 3.06890 3.09567 3.53123 3.62565 3.70833 3.75402 4.02934 4.19056 4.32043 4.43778 4.60664 4.78973 4.84397 5.03306 5.09562 5.22599 5.22641 5.34875 5.47158 5.61525 5.67102 5.82831 6.62524 6.73727 6.76217 7.19956 7.34386 8.82882 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.003723 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.005757 B = 7518.167090 C = 8629.882073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.693 5.693 11 C 0.542 3.458 12 O -0.581 6.581 13 C -0.121 4.121 14 C -0.054 4.054 15 C -0.089 4.089 16 C -0.002 4.002 17 Cl -0.035 7.035 18 C 0.106 3.894 19 N -0.485 5.485 20 C 0.138 3.862 21 C -0.161 4.161 22 C -0.087 4.087 23 C -0.073 4.073 24 H 0.269 0.731 25 H -0.005 1.005 26 H -0.006 1.006 27 H 0.409 0.591 28 H 0.170 0.830 29 H 0.184 0.816 30 H 0.203 0.797 31 H 0.171 0.829 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.650 -17.352 0.300 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.342 5.342 11 C 0.330 3.670 12 O -0.465 6.465 13 C -0.125 4.125 14 C -0.073 4.073 15 C -0.109 4.109 16 C -0.030 4.030 17 Cl -0.006 7.006 18 C -0.016 4.016 19 N -0.194 5.194 20 C -0.034 4.034 21 C -0.180 4.180 22 C -0.113 4.113 23 C -0.076 4.076 24 H 0.078 0.922 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.246 0.754 28 H 0.187 0.813 29 H 0.201 0.799 30 H 0.219 0.781 31 H 0.188 0.812 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.492 -18.069 0.285 20.896 hybrid contribution -0.476 1.602 0.000 1.671 sum 10.015 -16.468 0.285 19.276 Atomic orbital electron populations 1.70116 1.08231 1.28660 1.49785 1.26009 0.95722 1.03759 0.93802 0.85241 0.77948 0.76731 0.79529 1.18604 1.21295 1.18664 1.21577 0.94431 0.90404 1.53181 0.89567 1.18649 0.88556 0.83740 0.94710 1.46131 1.11598 1.05038 1.71395 1.18554 0.88025 0.83620 0.76763 1.90517 1.18260 1.84433 1.53257 1.19990 0.94662 0.91971 1.05894 1.21710 0.90219 1.01428 0.93920 1.21087 1.02733 0.88806 0.98309 1.20891 0.88299 0.90999 1.02779 1.98374 1.56170 1.49757 1.96266 1.18601 0.92560 0.89442 1.01022 1.68140 1.19142 1.18532 1.13541 1.23705 0.86976 1.01875 0.90829 1.22449 1.03362 0.92416 0.99820 1.22655 0.95722 0.99680 0.93219 1.18672 0.95089 0.92514 1.01371 0.92232 0.98743 0.98797 0.75351 0.81314 0.79875 0.78081 0.81153 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 13.29 21.45 0.28 -54.25 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.98 40.89 29.54 68.60 2.03 42.91 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.56 -29.10 9.28 25.60 0.24 -28.86 16 8 H 0.09 3.99 7.60 -2.91 -0.02 3.97 16 9 C 0.27 13.98 5.43 85.64 0.46 14.44 16 10 N -0.69 -28.12 5.50 -470.06 -2.58 -30.70 16 11 C 0.54 21.68 7.72 86.68 0.67 22.35 16 12 O -0.58 -27.31 13.40 -4.03 -0.05 -27.36 16 13 C -0.12 -3.80 5.90 -19.89 -0.12 -3.92 16 14 C -0.05 -1.23 9.51 22.54 0.21 -1.01 16 15 C -0.09 -1.74 9.68 21.99 0.21 -1.52 16 16 C 0.00 -0.04 6.34 22.48 0.14 0.10 16 17 Cl -0.04 -0.74 28.49 -2.72 -0.08 -0.82 16 18 C 0.11 2.98 6.60 40.31 0.27 3.24 16 19 N -0.49 -12.62 9.80 -188.60 -1.85 -14.47 16 20 C 0.14 2.81 11.15 85.07 0.95 3.76 16 21 C -0.16 -3.56 10.04 22.17 0.22 -3.34 16 22 C -0.09 -2.68 9.29 22.45 0.21 -2.47 16 23 C -0.07 -2.29 5.76 -21.11 -0.12 -2.42 16 24 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.41 13.31 6.39 -92.71 -0.59 12.71 16 28 H 0.17 2.93 6.42 -2.91 -0.02 2.91 16 29 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 30 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.16 5.72 4.96 -3.24 -0.02 5.70 16 Total: -1.00 -70.55 297.62 2.15 -68.40 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.59 Total: 15.08 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 3.81 Total: 1.20 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.15 Total: -99.42 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.36 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -70.55 2.15 -68.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334475069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.499 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds