Wall clock time and date at job start Tue Mar 31 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36703 * 119.99753 * 2 1 4 4 H 1.07994 * 119.99615 * 145.99971 * 3 2 1 5 5 C 1.39166 * 120.00098 * 325.72739 * 3 2 1 6 6 N 1.31284 * 120.00145 * 168.44022 * 5 3 2 7 7 Si 1.86808 * 119.99937 * 348.43666 * 5 3 2 8 8 H 1.48497 * 109.46817 * 87.17854 * 7 5 3 9 9 H 1.48495 * 109.46987 * 207.17673 * 7 5 3 10 10 H 1.48498 * 109.46875 * 327.17840 * 7 5 3 11 11 C 1.34775 * 120.00124 * 180.02562 * 2 1 3 12 12 O 1.21560 * 119.99979 * 184.61511 * 11 2 1 13 13 C 1.48012 * 119.99948 * 4.60665 * 11 2 1 14 14 N 1.32024 * 119.26157 * 6.25384 * 13 11 2 15 15 C 1.33251 * 121.29851 * 179.97438 * 14 13 11 16 16 C 1.40836 * 120.94770 * 180.02562 * 15 14 13 17 17 C 1.35999 * 119.73437 * 179.97438 * 16 15 14 18 18 C 1.39437 * 121.08673 * 0.02562 * 17 16 15 19 19 C 1.36144 * 120.91557 * 0.02562 * 18 17 16 20 20 C 1.40418 * 119.65988 * 359.95613 * 19 18 17 21 21 C 1.40715 * 121.26105 * 180.02562 * 20 19 18 22 22 C 1.36624 * 118.25816 * 179.71022 * 21 20 19 23 23 Cl 1.73600 * 120.10741 * 180.27398 * 22 21 20 24 24 H 1.08996 * 109.46972 * 355.25765 * 1 2 3 25 25 H 1.09003 * 109.46618 * 115.24894 * 1 2 3 26 26 H 1.08996 * 109.47049 * 235.25299 * 1 2 3 27 27 H 0.96993 * 119.99836 * 179.97438 * 6 5 3 28 28 H 1.07993 * 120.13844 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.45976 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.54038 * 179.97438 * 18 17 16 31 31 H 1.08004 * 120.16621 * 179.97438 * 19 18 17 32 32 H 1.08007 * 120.87070 * 0.04552 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1839 0.0000 4 1 3.0900 1.2638 0.5230 5 6 1.6339 2.2845 -0.6787 6 7 2.1609 3.4731 -0.4969 7 14 0.1932 2.0705 -1.8485 8 1 -1.0796 2.1797 -1.0913 9 1 0.2411 3.1268 -2.8911 10 1 0.2729 0.7350 -2.4927 11 6 2.1390 -1.1672 -0.0005 12 8 3.3516 -1.1689 0.0842 13 6 1.4025 -2.4469 -0.1040 14 7 0.1002 -2.4264 -0.3200 15 6 -0.6027 -3.5539 -0.4206 16 6 -1.9916 -3.5234 -0.6516 17 6 -2.6847 -4.6893 -0.7506 18 6 -2.0431 -5.9211 -0.6267 19 6 -0.7022 -5.9918 -0.4021 20 6 0.0476 -4.8095 -0.2942 21 6 1.4352 -4.8433 -0.0629 22 6 2.1054 -3.6560 0.0254 23 17 3.8190 -3.6418 0.3027 24 1 -0.3633 1.0241 0.0850 25 1 -0.3633 -0.4384 -0.9295 26 1 -0.3633 -0.5857 0.8444 27 1 1.8024 4.2400 -0.9702 28 1 -2.5042 -2.5780 -0.7505 29 1 -3.7497 -4.6608 -0.9282 30 1 -2.6180 -6.8316 -0.7092 31 1 -0.2176 -6.9524 -0.3076 32 1 1.9577 -5.7833 0.0367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334595741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:13 Heat of formation + Delta-G solvation = 55.584294 kcal Electronic energy + Delta-G solvation = -20375.060269 eV Core-core repulsion = 17135.243168 eV Total energy + Delta-G solvation = -3239.817102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87229 -38.69770 -36.87339 -36.00623 -34.87782 -33.41961 -32.14303 -30.47161 -29.91804 -26.48657 -25.92723 -24.22214 -23.33526 -22.15349 -20.01452 -17.96867 -17.60331 -17.11834 -16.67780 -15.74584 -15.08849 -15.02377 -14.81668 -14.43233 -13.93329 -13.76069 -13.50054 -13.29081 -12.61995 -12.53082 -12.34102 -12.21914 -11.85874 -11.75368 -11.50554 -11.33443 -10.78891 -10.60958 -10.35156 -10.19865 -9.94197 -9.39739 -9.20917 -8.58209 -8.34653 -8.26122 -7.78416 -6.51934 -4.01715 0.23188 0.63763 1.90746 2.39030 2.59095 3.03311 3.19459 3.23328 3.75215 4.03968 4.07604 4.30780 4.41080 4.51188 4.71124 4.83295 4.91318 5.00422 5.08224 5.17405 5.42322 5.65810 5.70727 5.83480 5.95981 6.07320 6.21623 6.30538 6.34018 6.38781 6.59099 6.73644 7.40426 7.84707 8.14570 8.40882 8.82682 9.17572 9.68853 10.58005 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.006660 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.566226 B = 4203.263193 C = 5719.970182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.429 5.429 3 C -0.300 4.300 4 H 0.116 0.884 5 C 0.055 3.945 6 N -0.853 5.853 7 Si 0.895 3.105 8 H -0.271 1.271 9 H -0.289 1.289 10 H -0.261 1.261 11 C 0.481 3.519 12 O -0.545 6.545 13 C 0.148 3.852 14 N -0.442 5.442 15 C 0.124 3.876 16 C -0.088 4.088 17 C -0.105 4.105 18 C -0.120 4.120 19 C -0.094 4.094 20 C -0.095 4.095 21 C -0.068 4.068 22 C -0.047 4.047 23 Cl -0.019 7.019 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.279 0.721 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 -17.498 -0.553 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.147 5.147 3 C -0.428 4.428 4 H 0.134 0.866 5 C -0.153 4.153 6 N -0.489 5.489 7 Si 0.722 3.278 8 H -0.198 1.198 9 H -0.216 1.216 10 H -0.185 1.185 11 C 0.269 3.731 12 O -0.426 6.426 13 C -0.006 4.006 14 N -0.155 5.155 15 C 0.001 3.999 16 C -0.107 4.107 17 C -0.125 4.125 18 C -0.139 4.139 19 C -0.113 4.113 20 C -0.098 4.098 21 C -0.094 4.094 22 C -0.077 4.077 23 Cl 0.011 6.989 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.619 -16.459 -0.613 19.074 hybrid contribution -0.336 -0.799 -0.535 1.019 sum -9.955 -17.259 -1.148 19.957 Atomic orbital electron populations 1.22355 0.82064 1.01134 1.02319 1.43641 1.05084 1.05469 1.60507 1.19360 1.07582 0.84749 1.31144 0.86627 1.25486 0.98341 0.94817 0.96642 1.69606 1.40842 0.98879 1.39549 0.86815 0.81509 0.78663 0.80777 1.19759 1.21641 1.18535 1.17503 0.86870 0.82072 0.86621 1.90754 1.11994 1.85312 1.54510 1.21901 0.89165 0.94786 0.94759 1.68778 1.06260 1.28113 1.12362 1.19133 0.94638 0.88077 0.98049 1.20863 0.91348 0.99368 0.99145 1.20876 1.00253 0.92052 0.99328 1.20887 0.94649 0.97983 1.00357 1.20917 0.94242 0.96765 0.99383 1.18793 0.93447 0.94787 1.02788 1.21298 0.92910 0.97479 0.97744 1.21597 0.88636 0.94344 1.03117 1.98409 1.08090 1.98676 1.93766 0.91439 0.91375 0.91963 0.91065 0.84519 0.85377 0.85666 0.85312 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.39 6.60 59.85 0.40 1.79 16 2 N -0.43 -10.90 2.70 -123.23 -0.33 -11.23 16 3 C -0.30 -8.52 9.55 -15.04 -0.14 -8.67 16 4 H 0.12 3.64 7.79 -52.49 -0.41 3.23 16 5 C 0.05 1.50 5.33 -17.44 -0.09 1.41 16 6 N -0.85 -24.26 13.95 55.51 0.77 -23.49 16 7 Si 0.89 20.70 24.25 -169.99 -4.12 16.58 16 8 H -0.27 -5.78 6.51 56.52 0.37 -5.42 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 11 C 0.48 11.95 7.58 -12.25 -0.09 11.86 16 12 O -0.54 -14.73 13.69 5.31 0.07 -14.65 16 13 C 0.15 3.06 6.65 -82.94 -0.55 2.50 16 14 N -0.44 -8.35 5.98 -7.54 -0.05 -8.39 16 15 C 0.12 1.95 6.61 -84.84 -0.56 1.39 16 16 C -0.09 -1.12 9.99 -39.40 -0.39 -1.51 16 17 C -0.11 -1.03 9.94 -39.94 -0.40 -1.42 16 18 C -0.12 -1.09 9.96 -39.89 -0.40 -1.49 16 19 C -0.09 -0.97 9.77 -39.51 -0.39 -1.36 16 20 C -0.10 -1.32 5.75 -106.72 -0.61 -1.93 16 21 C -0.07 -0.96 9.65 -39.23 -0.38 -1.34 16 22 C -0.05 -0.84 6.32 -39.33 -0.25 -1.09 16 23 Cl -0.02 -0.34 25.94 -51.86 -1.35 -1.69 16 24 H 0.07 1.46 4.43 -51.93 -0.23 1.23 16 25 H 0.07 1.42 5.66 -51.93 -0.29 1.13 16 26 H 0.06 1.22 7.25 -51.93 -0.38 0.85 16 27 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 284.10 15.07 4.28 4.28 Total: -1.00 -31.57 284.10 -7.20 -38.77 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -2.62 Total: -0.33 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.86 Total: 0.15 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.40 Total: -43.11 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.65 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.12 Total: 16.58 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.35 Total: -1.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.57 -7.20 -38.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334595741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.352 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds