Wall clock time and date at job start Tue Mar 31 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36703 * 119.99753 * 2 1 4 4 H 1.07994 * 119.99615 * 145.99971 * 3 2 1 5 5 C 1.39166 * 120.00098 * 325.72739 * 3 2 1 6 6 N 1.31284 * 120.00145 * 168.44022 * 5 3 2 7 7 Si 1.86808 * 119.99937 * 348.43666 * 5 3 2 8 8 H 1.48497 * 109.46817 * 87.17854 * 7 5 3 9 9 H 1.48495 * 109.46987 * 207.17673 * 7 5 3 10 10 H 1.48498 * 109.46875 * 327.17840 * 7 5 3 11 11 C 1.34775 * 120.00124 * 180.02562 * 2 1 3 12 12 O 1.21560 * 119.99979 * 184.61511 * 11 2 1 13 13 C 1.48012 * 119.99948 * 4.60665 * 11 2 1 14 14 N 1.32024 * 119.26157 * 6.25384 * 13 11 2 15 15 C 1.33251 * 121.29851 * 179.97438 * 14 13 11 16 16 C 1.40836 * 120.94770 * 180.02562 * 15 14 13 17 17 C 1.35999 * 119.73437 * 179.97438 * 16 15 14 18 18 C 1.39437 * 121.08673 * 0.02562 * 17 16 15 19 19 C 1.36144 * 120.91557 * 0.02562 * 18 17 16 20 20 C 1.40418 * 119.65988 * 359.95613 * 19 18 17 21 21 C 1.40715 * 121.26105 * 180.02562 * 20 19 18 22 22 C 1.36624 * 118.25816 * 179.71022 * 21 20 19 23 23 Cl 1.73600 * 120.10741 * 180.27398 * 22 21 20 24 24 H 1.08996 * 109.46972 * 355.25765 * 1 2 3 25 25 H 1.09003 * 109.46618 * 115.24894 * 1 2 3 26 26 H 1.08996 * 109.47049 * 235.25299 * 1 2 3 27 27 H 0.96993 * 119.99836 * 179.97438 * 6 5 3 28 28 H 1.07993 * 120.13844 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.45976 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.54038 * 179.97438 * 18 17 16 31 31 H 1.08004 * 120.16621 * 179.97438 * 19 18 17 32 32 H 1.08007 * 120.87070 * 0.04552 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1839 0.0000 4 1 3.0900 1.2638 0.5230 5 6 1.6339 2.2845 -0.6787 6 7 2.1609 3.4731 -0.4969 7 14 0.1932 2.0705 -1.8485 8 1 -1.0796 2.1797 -1.0913 9 1 0.2411 3.1268 -2.8911 10 1 0.2729 0.7350 -2.4927 11 6 2.1390 -1.1672 -0.0005 12 8 3.3516 -1.1689 0.0842 13 6 1.4025 -2.4469 -0.1040 14 7 0.1002 -2.4264 -0.3200 15 6 -0.6027 -3.5539 -0.4206 16 6 -1.9916 -3.5234 -0.6516 17 6 -2.6847 -4.6893 -0.7506 18 6 -2.0431 -5.9211 -0.6267 19 6 -0.7022 -5.9918 -0.4021 20 6 0.0476 -4.8095 -0.2942 21 6 1.4352 -4.8433 -0.0629 22 6 2.1054 -3.6560 0.0254 23 17 3.8190 -3.6418 0.3027 24 1 -0.3633 1.0241 0.0850 25 1 -0.3633 -0.4384 -0.9295 26 1 -0.3633 -0.5857 0.8444 27 1 1.8024 4.2400 -0.9702 28 1 -2.5042 -2.5780 -0.7505 29 1 -3.7497 -4.6608 -0.9282 30 1 -2.6180 -6.8316 -0.7092 31 1 -0.2176 -6.9524 -0.3076 32 1 1.9577 -5.7833 0.0367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334595741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:12 Heat of formation + Delta-G solvation = 34.479665 kcal Electronic energy + Delta-G solvation = -20375.975435 eV Core-core repulsion = 17135.243168 eV Total energy + Delta-G solvation = -3240.732267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.11111 -40.37117 -38.12903 -37.32295 -36.79575 -34.64398 -34.07409 -31.67569 -30.93447 -28.30923 -27.61577 -25.64896 -24.54385 -23.13289 -21.65239 -19.24923 -19.06462 -18.79115 -18.11507 -17.59748 -16.57352 -16.35604 -16.01529 -15.57203 -15.39864 -15.18965 -14.88721 -14.53180 -14.30536 -14.15871 -14.01566 -13.87083 -13.34747 -12.68225 -12.63267 -12.57551 -12.39653 -12.25921 -12.11537 -11.80332 -11.31431 -11.12640 -10.89524 -10.09495 -9.83883 -9.67732 -9.25227 -8.56605 -6.19834 -0.87972 -0.50542 0.89201 1.08204 1.18489 1.27514 1.41991 1.46302 2.13477 2.26211 2.43037 2.88843 3.01767 3.14565 3.52958 3.57534 3.71699 3.85605 4.14266 4.28689 4.33774 4.35931 4.63253 4.65745 4.67605 4.79372 4.89510 5.06894 5.34678 5.36813 5.45307 5.48377 5.85293 5.94953 6.39192 6.58705 6.81385 7.15689 7.73262 8.59193 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.006660 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.566226 B = 4203.263193 C = 5719.970182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.452 5.452 3 C -0.332 4.332 4 H 0.057 0.943 5 C 0.012 3.988 6 N -0.905 5.905 7 Si 0.960 3.040 8 H -0.235 1.235 9 H -0.285 1.285 10 H -0.265 1.265 11 C 0.483 3.517 12 O -0.578 6.578 13 C 0.115 3.885 14 N -0.448 5.448 15 C 0.095 3.905 16 C -0.110 4.110 17 C -0.083 4.083 18 C -0.099 4.099 19 C -0.095 4.095 20 C -0.096 4.096 21 C -0.041 4.041 22 C -0.074 4.074 23 Cl -0.036 7.036 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.284 0.716 28 H 0.141 0.859 29 H 0.167 0.833 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 -22.465 -1.669 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.172 5.172 3 C -0.460 4.460 4 H 0.075 0.925 5 C -0.191 4.191 6 N -0.543 5.543 7 Si 0.783 3.217 8 H -0.159 1.159 9 H -0.212 1.212 10 H -0.189 1.189 11 C 0.272 3.728 12 O -0.460 6.460 13 C -0.038 4.038 14 N -0.160 5.160 15 C -0.028 4.028 16 C -0.128 4.128 17 C -0.103 4.103 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.098 4.098 21 C -0.067 4.067 22 C -0.104 4.104 23 Cl -0.007 7.007 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.159 0.841 29 H 0.184 0.816 30 H 0.188 0.812 31 H 0.184 0.816 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -14.320 -21.427 -1.710 25.828 hybrid contribution 0.880 0.198 -0.159 0.916 sum -13.440 -21.228 -1.868 25.194 Atomic orbital electron populations 1.22363 0.79766 1.01213 1.03387 1.43640 1.06429 1.04558 1.62547 1.18871 1.06963 0.87121 1.33088 0.92478 1.26236 1.01457 0.93855 0.97558 1.69717 1.43357 0.99821 1.41374 0.85804 0.79283 0.78164 0.78448 1.15925 1.21174 1.18919 1.18294 0.86952 0.83577 0.83978 1.90700 1.13955 1.86591 1.54785 1.21179 0.90280 0.93320 0.98978 1.68538 1.05454 1.30606 1.11442 1.19630 0.95923 0.87970 0.99319 1.21087 0.90066 1.01218 1.00466 1.21417 1.02036 0.91146 0.95683 1.21509 0.94370 0.99363 0.96431 1.21358 0.94827 0.96691 0.98491 1.19143 0.93418 0.95587 1.01671 1.21742 0.93170 0.97387 0.94384 1.21607 0.88004 0.94807 1.05968 1.98393 1.09498 1.98698 1.94143 0.91736 0.90394 0.90588 0.90573 0.84075 0.81588 0.81210 0.81596 0.79475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.27 6.60 127.77 0.84 4.11 16 2 N -0.45 -24.35 2.70 -662.07 -1.79 -26.14 16 3 C -0.33 -20.52 9.55 84.16 0.80 -19.72 16 4 H 0.06 4.05 7.79 -2.91 -0.02 4.03 16 5 C 0.01 0.69 5.33 85.00 0.45 1.14 16 6 N -0.91 -54.94 13.95 21.70 0.30 -54.64 16 7 Si 0.96 43.72 24.25 68.60 1.66 45.38 16 8 H -0.24 -9.28 6.51 99.48 0.65 -8.63 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 11 C 0.48 25.50 7.58 86.84 0.66 26.16 16 12 O -0.58 -33.75 13.69 -3.90 -0.05 -33.80 16 13 C 0.12 4.86 6.65 42.25 0.28 5.15 16 14 N -0.45 -16.56 5.98 -177.76 -1.06 -17.62 16 15 C 0.10 2.71 6.61 40.49 0.27 2.97 16 16 C -0.11 -2.29 9.99 22.39 0.22 -2.07 16 17 C -0.08 -1.05 9.94 22.04 0.22 -0.83 16 18 C -0.10 -1.00 9.96 22.07 0.22 -0.78 16 19 C -0.10 -1.30 9.77 22.31 0.22 -1.08 16 20 C -0.10 -2.22 5.75 -21.22 -0.12 -2.35 16 21 C -0.04 -1.02 9.65 22.50 0.22 -0.81 16 22 C -0.07 -2.62 6.32 22.43 0.14 -2.48 16 23 Cl -0.04 -1.37 25.94 -2.72 -0.07 -1.44 16 24 H 0.06 2.80 4.43 -2.39 -0.01 2.79 16 25 H 0.08 3.21 5.66 -2.39 -0.01 3.19 16 26 H 0.08 3.01 7.25 -2.39 -0.02 3.00 16 27 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 28 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 30 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 31 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -79.13 284.10 4.47 -74.66 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.05 Total: 4.16 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.42 Total: 9.43 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -2.55 Total: -98.40 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.66 Total: 45.38 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.44 kcal Total: -79.13 4.47 -74.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334595741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.140 kcal (2) G-P(sol) polarization free energy of solvation -79.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds