Wall clock time and date at job start Tue Mar 31 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39756 * 120.00788 * 125.12135 * 3 2 1 5 5 C 1.37626 * 120.01289 * 180.25244 * 4 3 2 6 6 C 1.39760 * 120.03924 * 359.73953 * 5 4 3 7 7 C 1.47751 * 119.99650 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99728 * 315.36593 * 7 6 5 9 9 N 1.34778 * 119.99877 * 135.36066 * 7 6 5 10 10 C 1.36759 * 119.99992 * 184.79937 * 9 7 6 11 11 H 1.07995 * 120.00562 * 133.71164 * 10 9 7 12 12 C 1.39125 * 119.99932 * 313.71479 * 10 9 7 13 13 N 1.31306 * 120.00359 * 167.13645 * 12 10 9 14 14 Si 1.86814 * 119.99713 * 347.13567 * 12 10 9 15 15 H 1.48500 * 109.46863 * 95.91576 * 14 12 10 16 16 H 1.48503 * 109.46768 * 215.91477 * 14 12 10 17 17 H 1.48497 * 109.47057 * 335.91397 * 14 12 10 18 18 C 1.46506 * 120.00170 * 4.79895 * 9 7 6 19 19 C 1.52997 * 117.49748 * 183.16646 * 18 9 7 20 20 C 1.52990 * 117.50057 * 114.54119 * 18 9 7 21 21 C 1.39670 * 120.01419 * 0.02562 * 6 5 4 22 22 C 1.37858 * 119.98330 * 359.97438 * 21 6 5 23 23 Cl 1.73601 * 120.01380 * 179.97438 * 22 21 6 24 24 H 1.07999 * 119.99407 * 359.97438 * 4 3 2 25 25 H 1.08004 * 119.98146 * 179.72352 * 5 4 3 26 26 H 0.97003 * 119.99919 * 179.97438 * 13 12 10 27 27 H 1.08996 * 115.54562 * 328.87113 * 18 9 7 28 28 H 1.08997 * 117.50064 * 0.02562 * 19 18 9 29 29 H 1.08993 * 117.49640 * 145.01967 * 19 18 9 30 30 H 1.08993 * 117.50334 * 214.98223 * 20 18 9 31 31 H 1.09006 * 117.49765 * 359.97438 * 20 18 9 32 32 H 1.08003 * 120.00611 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2666 0.6972 -0.9899 5 6 4.6428 0.6936 -0.9930 6 6 5.3429 -0.0020 -0.0034 7 6 6.8204 -0.0047 -0.0073 8 8 7.4252 -0.1821 -1.0471 9 7 7.4977 0.1894 1.1417 10 6 8.8618 0.2849 1.1235 11 1 9.3554 1.0730 1.6727 12 6 9.6138 -0.6332 0.3975 13 7 10.8864 -0.4048 0.1684 14 14 8.8130 -2.1913 -0.2514 15 1 8.3953 -1.9829 -1.6612 16 1 9.7844 -3.3124 -0.1834 17 1 7.6226 -2.5169 0.5746 18 6 6.7726 0.2982 2.4100 19 6 7.5912 0.5922 3.6687 20 6 6.9986 -0.8013 3.4496 21 6 4.6461 -0.6945 0.9894 22 6 3.2675 -0.6914 0.9933 23 17 2.4007 -1.5525 2.2265 24 1 2.7264 1.2347 -1.7552 25 1 5.1822 1.2284 -1.7608 26 1 11.4107 -1.0451 -0.3375 27 1 5.7749 0.7323 2.3453 28 1 8.6691 0.7051 3.5531 29 1 7.1321 1.2199 4.4324 30 1 6.1498 -1.0904 4.0691 31 1 7.6866 -1.6059 3.1896 32 1 5.1872 -1.2316 1.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335839208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:18 Heat of formation + Delta-G solvation = 62.852410 kcal Electronic energy + Delta-G solvation = -20362.467748 eV Core-core repulsion = 17122.965816 eV Total energy + Delta-G solvation = -3239.501932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25623 -38.68409 -36.78074 -36.60734 -36.34809 -33.17963 -32.12302 -31.22632 -30.99038 -26.08854 -24.14500 -22.90799 -22.08448 -21.60221 -19.80151 -19.18510 -17.92125 -16.67682 -15.97669 -15.57600 -15.30761 -14.80656 -14.43590 -14.13709 -14.01796 -13.75841 -13.46918 -13.23271 -12.90574 -12.89332 -12.67918 -12.38468 -11.77613 -11.58677 -11.55267 -11.28732 -11.19763 -10.85184 -10.44091 -10.22347 -10.18266 -9.80106 -9.16649 -8.97490 -8.79386 -8.68930 -7.71585 -6.39493 -4.22378 0.34113 1.02766 1.81142 2.49281 2.60063 3.16828 3.35477 3.50206 3.58381 3.64599 3.74333 4.07126 4.30858 4.48560 4.58013 4.79947 5.03012 5.08975 5.18126 5.26626 5.32238 5.45109 5.56718 5.61912 5.79834 5.96841 6.05528 6.14910 6.30586 6.46012 6.53849 6.74051 7.29346 7.59407 7.75705 8.49284 8.60910 9.14863 9.49619 10.62498 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.005927 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.865865 B = 4723.149207 C = 5274.802033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.259 3.741 3 C -0.028 4.028 4 C -0.061 4.061 5 C -0.077 4.077 6 C -0.052 4.052 7 C 0.476 3.524 8 O -0.533 6.533 9 N -0.414 5.414 10 C -0.340 4.340 11 H 0.103 0.897 12 C 0.088 3.912 13 N -0.856 5.856 14 Si 0.926 3.074 15 H -0.255 1.255 16 H -0.311 1.311 17 H -0.281 1.281 18 C 0.050 3.950 19 C -0.167 4.167 20 C -0.199 4.199 21 C -0.098 4.098 22 C 0.003 3.997 23 Cl -0.056 7.056 24 H 0.145 0.855 25 H 0.149 0.851 26 H 0.277 0.723 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 0.547 3.701 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.057 4.057 3 C -0.033 4.033 4 C -0.082 4.082 5 C -0.096 4.096 6 C -0.057 4.057 7 C 0.267 3.733 8 O -0.417 6.417 9 N -0.132 5.132 10 C -0.466 4.466 11 H 0.120 0.880 12 C -0.123 4.123 13 N -0.489 5.489 14 Si 0.758 3.242 15 H -0.181 1.181 16 H -0.241 1.241 17 H -0.207 1.207 18 C -0.055 4.055 19 C -0.205 4.205 20 C -0.237 4.237 21 C -0.117 4.117 22 C -0.026 4.026 23 Cl -0.027 7.027 24 H 0.163 0.837 25 H 0.167 0.833 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.553 0.366 3.235 13.939 hybrid contribution 0.093 -0.897 -0.060 0.904 sum -13.460 -0.531 3.176 13.840 Atomic orbital electron populations 1.81206 1.11762 1.08099 1.07547 1.25416 0.92380 0.93940 0.93941 1.15825 0.84583 1.04257 0.98614 1.21077 0.93921 0.96784 0.96399 1.21256 0.92891 0.97718 0.97710 1.20610 0.95724 0.95570 0.93830 1.18127 0.85345 0.84938 0.84896 1.90611 1.67862 1.52021 1.31167 1.43033 1.06466 1.61454 1.02210 1.18876 0.77781 1.14715 1.35227 0.87984 1.25500 0.94657 0.98349 0.93789 1.69643 1.07792 1.35798 1.35654 0.86006 0.77713 0.78919 0.81545 1.18126 1.24132 1.20693 1.22061 0.96740 1.03694 0.82993 1.23164 1.01869 0.97869 0.97556 1.23354 1.03639 0.93695 1.03041 1.21509 0.91080 0.99661 0.99477 1.20784 0.92219 0.97742 0.91873 1.98394 1.76366 1.75279 1.52657 0.83727 0.83339 0.91311 0.86608 0.86872 0.89174 0.89031 0.88274 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.85 18.54 41.83 0.78 -5.07 16 2 C 0.26 3.29 14.36 -22.47 -0.32 2.96 16 3 C -0.03 -0.34 5.74 -106.81 -0.61 -0.95 16 4 C -0.06 -0.66 9.73 -39.24 -0.38 -1.05 16 5 C -0.08 -1.03 9.66 -39.24 -0.38 -1.41 16 6 C -0.05 -0.87 5.17 -104.91 -0.54 -1.41 16 7 C 0.48 10.33 5.54 -12.37 -0.07 10.26 16 8 O -0.53 -13.60 12.08 5.29 0.06 -13.54 16 9 N -0.41 -9.01 2.46 -108.84 -0.27 -9.28 16 10 C -0.34 -8.71 8.53 -15.02 -0.13 -8.84 16 11 H 0.10 2.73 7.25 -52.49 -0.38 2.35 16 12 C 0.09 2.41 5.02 -17.45 -0.09 2.32 16 13 N -0.86 -24.39 13.95 55.50 0.77 -23.62 16 14 Si 0.93 23.35 24.43 -169.99 -4.15 19.20 16 15 H -0.26 -6.80 6.36 56.52 0.36 -6.44 16 16 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 17 H -0.28 -6.74 7.01 56.52 0.40 -6.34 16 18 C 0.05 0.85 4.42 -67.93 -0.30 0.55 16 19 C -0.17 -2.58 9.81 -26.73 -0.26 -2.84 16 20 C -0.20 -3.03 9.48 -26.74 -0.25 -3.29 16 21 C -0.10 -1.41 7.34 -39.19 -0.29 -1.70 16 22 C 0.00 0.04 6.34 -39.13 -0.25 -0.21 16 23 Cl -0.06 -0.68 28.01 -51.86 -1.45 -2.13 16 24 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 25 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 26 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.12 1.68 6.18 -51.93 -0.32 1.36 16 28 H 0.11 2.01 6.62 -51.93 -0.34 1.67 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.15 2.24 5.77 -52.48 -0.30 1.94 16 LS Contribution 295.76 15.07 4.46 4.46 Total: -1.00 -30.04 295.76 -6.32 -36.36 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -2.64 Total: -0.79 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.88 Total: -5.60 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 1.28 Total: -37.96 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.06 Total: -13.54 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.15 Total: 19.20 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.45 Total: -2.13 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.04 -6.32 -36.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335839208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.214 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds