Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39756 * 120.00788 * 125.12135 * 3 2 1 5 5 C 1.37626 * 120.01289 * 180.25244 * 4 3 2 6 6 C 1.39760 * 120.03924 * 359.73953 * 5 4 3 7 7 C 1.47751 * 119.99650 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99728 * 315.36593 * 7 6 5 9 9 N 1.34778 * 119.99877 * 135.36066 * 7 6 5 10 10 C 1.36759 * 119.99992 * 184.79937 * 9 7 6 11 11 H 1.07995 * 120.00562 * 133.71164 * 10 9 7 12 12 C 1.39125 * 119.99932 * 313.71479 * 10 9 7 13 13 N 1.31306 * 120.00359 * 167.13645 * 12 10 9 14 14 Si 1.86814 * 119.99713 * 347.13567 * 12 10 9 15 15 H 1.48500 * 109.46863 * 95.91576 * 14 12 10 16 16 H 1.48503 * 109.46768 * 215.91477 * 14 12 10 17 17 H 1.48497 * 109.47057 * 335.91397 * 14 12 10 18 18 C 1.46506 * 120.00170 * 4.79895 * 9 7 6 19 19 C 1.52997 * 117.49748 * 183.16646 * 18 9 7 20 20 C 1.52990 * 117.50057 * 114.54119 * 18 9 7 21 21 C 1.39670 * 120.01419 * 0.02562 * 6 5 4 22 22 C 1.37858 * 119.98330 * 359.97438 * 21 6 5 23 23 Cl 1.73601 * 120.01380 * 179.97438 * 22 21 6 24 24 H 1.07999 * 119.99407 * 359.97438 * 4 3 2 25 25 H 1.08004 * 119.98146 * 179.72352 * 5 4 3 26 26 H 0.97003 * 119.99919 * 179.97438 * 13 12 10 27 27 H 1.08996 * 115.54562 * 328.87113 * 18 9 7 28 28 H 1.08997 * 117.50064 * 0.02562 * 19 18 9 29 29 H 1.08993 * 117.49640 * 145.01967 * 19 18 9 30 30 H 1.08993 * 117.50334 * 214.98223 * 20 18 9 31 31 H 1.09006 * 117.49765 * 359.97438 * 20 18 9 32 32 H 1.08003 * 120.00611 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2666 0.6972 -0.9899 5 6 4.6428 0.6936 -0.9930 6 6 5.3429 -0.0020 -0.0034 7 6 6.8204 -0.0047 -0.0073 8 8 7.4252 -0.1821 -1.0471 9 7 7.4977 0.1894 1.1417 10 6 8.8618 0.2849 1.1235 11 1 9.3554 1.0730 1.6727 12 6 9.6138 -0.6332 0.3975 13 7 10.8864 -0.4048 0.1684 14 14 8.8130 -2.1913 -0.2514 15 1 8.3953 -1.9829 -1.6612 16 1 9.7844 -3.3124 -0.1834 17 1 7.6226 -2.5169 0.5746 18 6 6.7726 0.2982 2.4100 19 6 7.5912 0.5922 3.6687 20 6 6.9986 -0.8013 3.4496 21 6 4.6461 -0.6945 0.9894 22 6 3.2675 -0.6914 0.9933 23 17 2.4007 -1.5525 2.2265 24 1 2.7264 1.2347 -1.7552 25 1 5.1822 1.2284 -1.7608 26 1 11.4107 -1.0451 -0.3375 27 1 5.7749 0.7323 2.3453 28 1 8.6691 0.7051 3.5531 29 1 7.1321 1.2199 4.4324 30 1 6.1498 -1.0904 4.0691 31 1 7.6866 -1.6059 3.1896 32 1 5.1872 -1.2316 1.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335839208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = 45.033440 kcal Electronic energy + Delta-G solvation = -20363.240437 eV Core-core repulsion = 17122.965816 eV Total energy + Delta-G solvation = -3240.274621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65007 -40.00274 -38.18340 -37.66166 -37.51595 -34.99829 -33.67634 -32.65363 -32.06127 -27.73102 -25.56149 -24.04400 -23.41355 -22.91966 -21.40359 -20.24916 -19.54314 -18.21402 -17.33511 -17.18482 -16.62611 -16.06727 -15.61862 -15.46991 -15.34415 -15.18989 -15.01877 -14.66236 -14.50519 -14.00388 -13.90412 -13.63784 -13.43157 -12.91310 -12.64786 -12.61641 -12.43133 -12.20766 -12.16807 -12.02859 -11.58891 -11.26202 -10.90470 -10.58946 -10.14625 -9.97561 -9.44687 -8.44539 -6.26692 -0.75993 -0.00623 0.79258 1.17970 1.30843 1.47384 1.48227 1.58148 1.99937 2.38848 2.44635 2.58061 2.66794 2.91623 3.19334 3.49436 3.66525 3.96600 4.03078 4.06009 4.16133 4.20780 4.30576 4.61697 4.69402 4.89691 4.90092 4.98923 5.19896 5.24532 5.40533 5.47705 5.64421 5.85079 6.28067 6.64970 6.78231 7.22458 7.70943 8.61662 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.005927 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.865865 B = 4723.149207 C = 5274.802033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.275 3.725 3 C -0.012 4.012 4 C -0.035 4.035 5 C -0.071 4.071 6 C -0.076 4.076 7 C 0.480 3.520 8 O -0.578 6.578 9 N -0.431 5.431 10 C -0.333 4.333 11 H 0.078 0.922 12 C 0.045 3.955 13 N -0.905 5.905 14 Si 0.968 3.032 15 H -0.280 1.280 16 H -0.312 1.312 17 H -0.264 1.264 18 C 0.034 3.966 19 C -0.163 4.163 20 C -0.186 4.186 21 C -0.090 4.090 22 C 0.006 3.994 23 Cl -0.045 7.045 24 H 0.185 0.815 25 H 0.153 0.847 26 H 0.275 0.725 27 H 0.147 0.853 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.245 0.707 4.510 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.040 4.040 3 C -0.017 4.017 4 C -0.056 4.056 5 C -0.090 4.090 6 C -0.081 4.081 7 C 0.272 3.728 8 O -0.465 6.465 9 N -0.149 5.149 10 C -0.460 4.460 11 H 0.096 0.904 12 C -0.160 4.160 13 N -0.542 5.542 14 Si 0.800 3.200 15 H -0.208 1.208 16 H -0.242 1.242 17 H -0.189 1.189 18 C -0.069 4.069 19 C -0.201 4.201 20 C -0.224 4.224 21 C -0.110 4.110 22 C -0.023 4.023 23 Cl -0.016 7.016 24 H 0.202 0.798 25 H 0.170 0.830 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.098 0.902 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.588 0.522 4.091 18.065 hybrid contribution 1.062 -0.852 -0.306 1.396 sum -16.525 -0.329 3.785 16.956 Atomic orbital electron populations 1.81255 1.12476 1.08664 1.08170 1.25304 0.92146 0.93293 0.93284 1.15907 0.84246 1.03295 0.98213 1.21368 0.92596 0.95327 0.96261 1.21360 0.93950 0.96975 0.96701 1.20192 0.92402 0.98890 0.96576 1.18898 0.87706 0.82230 0.83984 1.90567 1.69656 1.53409 1.32819 1.43162 1.05373 1.62016 1.04380 1.18670 0.79869 1.13444 1.34059 0.90402 1.26028 0.94948 1.00354 0.94680 1.69719 1.08935 1.37003 1.38523 0.85329 0.77575 0.77284 0.79843 1.20789 1.24238 1.18879 1.22373 0.97729 1.05685 0.81159 1.23199 1.00181 0.98951 0.97730 1.23405 1.04194 0.92542 1.02249 1.21333 0.91634 0.99257 0.98762 1.20689 0.91622 0.97728 0.92285 1.98409 1.75878 1.75035 1.52240 0.79756 0.82978 0.91560 0.83537 0.90153 0.85314 0.84875 0.90983 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.63 18.54 19.00 0.35 -10.28 16 2 C 0.28 5.78 14.36 88.33 1.27 7.05 16 3 C -0.01 -0.23 5.74 -21.28 -0.12 -0.36 16 4 C -0.04 -0.59 9.73 22.49 0.22 -0.37 16 5 C -0.07 -1.68 9.66 22.49 0.22 -1.46 16 6 C -0.08 -2.34 5.17 -20.05 -0.10 -2.45 16 7 C 0.48 20.69 5.54 86.76 0.48 21.17 16 8 O -0.58 -30.06 12.08 -4.00 -0.05 -30.11 16 9 N -0.43 -18.83 2.46 -616.52 -1.52 -20.34 16 10 C -0.33 -17.75 8.53 84.14 0.72 -17.03 16 11 H 0.08 4.43 7.25 -2.91 -0.02 4.41 16 12 C 0.05 2.58 5.02 84.98 0.43 3.00 16 13 N -0.90 -54.54 13.95 21.69 0.30 -54.24 16 14 Si 0.97 49.76 24.43 68.60 1.68 51.43 16 15 H -0.28 -15.40 6.36 99.48 0.63 -14.76 16 16 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 17 H -0.26 -12.49 7.01 99.48 0.70 -11.79 16 18 C 0.03 1.10 4.42 44.99 0.20 1.30 16 19 C -0.16 -4.79 9.81 30.59 0.30 -4.49 16 20 C -0.19 -5.25 9.48 30.59 0.29 -4.96 16 21 C -0.09 -2.32 7.34 22.53 0.17 -2.15 16 22 C 0.01 0.13 6.34 22.56 0.14 0.28 16 23 Cl -0.04 -0.91 28.01 -2.72 -0.08 -0.99 16 24 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 25 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 26 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.15 3.74 6.18 -2.39 -0.01 3.73 16 28 H 0.08 2.93 6.62 -2.39 -0.02 2.91 16 29 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.13 2.65 8.14 -2.39 -0.02 2.64 16 31 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 32 H 0.15 3.96 5.77 -2.91 -0.02 3.94 16 Total: -1.00 -69.58 295.76 5.98 -63.60 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: 1.09 Total: 1.41 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 4.20 Total: -0.48 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -0.86 Total: -84.86 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.05 Total: -30.11 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.68 Total: 51.43 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -69.58 5.98 -63.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335839208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.629 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds