Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86792 * 120.00183 * 2 1 4 4 H 1.48501 * 109.47532 * 270.00420 * 3 2 1 5 5 H 1.48503 * 109.47162 * 30.00626 * 3 2 1 6 6 H 1.48499 * 109.47142 * 150.00760 * 3 2 1 7 7 C 1.40142 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.41761 * 120.00166 * 0.27336 * 7 2 1 10 10 O 1.21780 * 120.00367 * 359.72359 * 9 7 2 11 11 N 1.34781 * 120.00254 * 179.72261 * 9 7 2 12 12 C 1.39466 * 120.00258 * 174.48081 * 11 9 7 13 13 C 1.38976 * 120.10460 * 335.11912 * 12 11 9 14 14 C 1.38045 * 119.98635 * 179.97438 * 13 12 11 15 15 C 1.38559 * 120.21160 * 0.02562 * 14 13 12 16 16 Cl 1.73607 * 119.89228 * 179.97438 * 15 14 13 17 17 C 1.38308 * 120.21654 * 0.02562 * 15 14 13 18 18 C 1.38656 * 119.99998 * 359.69748 * 17 15 14 19 19 N 1.40155 * 120.10236 * 180.27020 * 18 17 15 20 20 C 1.36561 * 125.66303 * 129.98958 * 19 18 17 21 21 C 1.34869 * 108.20012 * 179.89441 * 20 19 18 22 22 C 1.40947 * 107.46111 * 0.37226 * 21 20 19 23 23 C 1.34856 * 107.46371 * 359.77142 * 22 21 20 24 24 H 0.97003 * 119.99753 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99660 * 354.48547 * 11 9 7 26 26 H 1.07995 * 120.00652 * 359.97438 * 13 12 11 27 27 H 1.08003 * 119.89727 * 180.02562 * 14 13 12 28 28 H 1.07993 * 119.99814 * 180.02562 * 17 15 14 29 29 H 1.08000 * 125.89763 * 0.04859 * 20 19 18 30 30 H 1.07998 * 126.26451 * 180.12164 * 21 20 19 31 31 H 1.08001 * 126.26421 * 179.74727 * 22 21 20 32 32 H 1.08004 * 125.89638 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 2.4878 2.0465 -1.4000 5 1 1.4379 2.6526 0.7002 6 1 3.5380 1.4400 0.6999 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0010 9 6 1.2981 -2.4414 -0.0069 10 8 0.0803 -2.4414 -0.0069 11 7 1.9719 -3.6086 -0.0131 12 6 1.2794 -4.8142 0.0968 13 6 0.0331 -4.8487 0.7107 14 6 -0.6505 -6.0433 0.8176 15 6 -0.0979 -7.2103 0.3150 16 17 -0.9645 -8.7081 0.4546 17 6 1.1424 -7.1859 -0.2967 18 6 1.8342 -5.9900 -0.4141 19 7 3.0886 -5.9619 -1.0385 20 6 3.4665 -5.0994 -2.0276 21 6 4.7408 -5.3809 -2.3678 22 6 5.1636 -6.4610 -1.5670 23 6 4.1339 -6.7965 -0.7634 24 1 -0.4850 0.8401 0.0004 25 1 2.9385 -3.6102 -0.0939 26 1 -0.4006 -3.9412 1.1040 27 1 -1.6192 -6.0684 1.2946 28 1 1.5696 -8.0975 -0.6876 29 1 2.8519 -4.3241 -2.4605 30 1 5.3282 -4.8744 -3.1193 31 1 6.1344 -6.9337 -1.5926 32 1 4.1355 -7.5886 -0.0293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335842226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = 39.045161 kcal Electronic energy + Delta-G solvation = -20057.177578 eV Core-core repulsion = 16816.643286 eV Total energy + Delta-G solvation = -3240.534292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37054 -39.18350 -37.46761 -36.14421 -33.72658 -32.91244 -32.37331 -29.63663 -28.56068 -28.35056 -26.49563 -23.01301 -22.54245 -20.29788 -19.95906 -19.90506 -18.11813 -17.66504 -16.51704 -15.87562 -15.27734 -15.09426 -14.24972 -14.17109 -13.79512 -13.52326 -13.28801 -13.08934 -12.87698 -12.66623 -12.19675 -11.94481 -11.83048 -11.57370 -11.45467 -11.34138 -11.10035 -10.83058 -10.72256 -10.45183 -9.53944 -9.22695 -9.04187 -8.26479 -7.98675 -7.86063 -7.22864 -6.54795 -5.09093 1.28145 1.53288 2.29399 2.59435 2.96612 3.04959 3.08287 3.19877 3.23731 3.81504 3.85440 4.28629 4.31861 5.02618 5.17113 5.27640 5.43862 5.48151 5.55563 5.69989 5.77547 5.84924 6.07895 6.20142 6.45086 6.50124 6.54011 6.60475 6.98099 7.09262 7.17535 7.43447 7.55099 7.67751 7.83488 7.91679 8.63125 8.99662 10.16555 10.35451 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.005453 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.981921 B = 5133.251819 C = 6836.437548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.072 0.928 9 C 0.538 3.462 10 O -0.562 6.562 11 N -0.687 5.687 12 C 0.213 3.787 13 C -0.119 4.119 14 C -0.081 4.081 15 C -0.073 4.073 16 Cl -0.085 7.085 17 C -0.083 4.083 18 C 0.050 3.950 19 N -0.388 5.388 20 C -0.002 4.002 21 C -0.202 4.202 22 C -0.200 4.200 23 C -0.016 4.016 24 H 0.275 0.725 25 H 0.397 0.603 26 H 0.171 0.829 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.163 0.837 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -10.476 -0.109 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.349 3.651 10 O -0.446 6.446 11 N -0.328 5.328 12 C 0.109 3.891 13 C -0.140 4.140 14 C -0.101 4.101 15 C -0.101 4.101 16 Cl -0.056 7.056 17 C -0.103 4.103 18 C -0.045 4.045 19 N -0.060 5.060 20 C -0.130 4.130 21 C -0.226 4.226 22 C -0.225 4.225 23 C -0.144 4.144 24 H 0.086 0.914 25 H 0.232 0.768 26 H 0.188 0.812 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.180 0.820 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.052 -10.321 0.059 10.763 hybrid contribution 0.929 0.565 -0.139 1.096 sum 3.980 -9.755 -0.080 10.536 Atomic orbital electron populations 1.69987 1.07336 1.28291 1.31325 1.25772 0.94706 1.00826 0.92302 0.86230 0.80237 0.80407 0.79261 1.19326 1.20082 1.18546 1.20064 0.94553 0.89779 1.52159 0.90934 1.17131 0.87613 0.81853 0.78525 1.90610 1.13411 1.85557 1.55029 1.44461 1.10236 1.04148 1.73944 1.18072 0.93413 0.85808 0.91839 1.21660 0.93967 0.99076 0.99339 1.21059 1.00106 0.90334 0.98577 1.20389 0.94563 0.87199 1.07969 1.98325 1.76621 1.33487 1.97185 1.20437 0.93072 0.96845 0.99943 1.17274 0.87965 0.94143 1.05115 1.41296 1.08738 1.27299 1.28632 1.22087 0.97413 0.98742 0.94734 1.20896 0.95296 1.01709 1.04730 1.20854 0.99038 1.01492 1.01084 1.21904 0.87753 0.99801 1.04925 0.91356 0.76814 0.81233 0.84902 0.85034 0.82006 0.84608 0.84775 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.24 11.73 55.56 0.65 -19.59 16 2 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.51 29.56 -169.99 -5.02 13.48 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.53 -13.72 9.31 -37.52 -0.35 -14.07 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.54 13.98 7.37 -14.91 -0.11 13.87 16 10 O -0.56 -16.21 12.03 5.12 0.06 -16.15 16 11 N -0.69 -14.81 4.65 -12.30 -0.06 -14.87 16 12 C 0.21 4.24 6.38 -83.57 -0.53 3.70 16 13 C -0.12 -2.35 8.71 -39.38 -0.34 -2.69 16 14 C -0.08 -1.33 9.82 -39.53 -0.39 -1.72 16 15 C -0.07 -1.11 6.32 -39.44 -0.25 -1.36 16 16 Cl -0.08 -1.13 28.95 -51.86 -1.50 -2.63 16 17 C -0.08 -1.28 9.43 -39.40 -0.37 -1.65 16 18 C 0.05 0.86 6.00 -83.36 -0.50 0.36 16 19 N -0.39 -6.31 2.62 -60.75 -0.16 -6.47 16 20 C 0.00 -0.02 9.44 -16.64 -0.16 -0.18 16 21 C -0.20 -2.97 10.86 -39.75 -0.43 -3.40 16 22 C -0.20 -2.75 10.86 -39.76 -0.43 -3.18 16 23 C -0.02 -0.23 11.11 -16.65 -0.19 -0.41 16 24 H 0.28 6.78 8.29 -40.82 -0.34 6.44 16 25 H 0.40 7.93 7.24 -40.82 -0.30 7.63 16 26 H 0.17 3.84 5.78 -52.49 -0.30 3.54 16 27 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 28 H 0.13 1.80 8.05 -52.49 -0.42 1.37 16 29 H 0.16 2.77 8.01 -52.49 -0.42 2.35 16 30 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.16 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -28.74 299.42 -8.34 -37.08 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -2.68 Total: 13.22 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -4.15 Total: -8.59 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.44 Total: -40.93 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.06 Total: -16.15 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.74 -8.34 -37.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335842226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.125 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds