Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86792 * 120.00183 * 2 1 4 4 H 1.48501 * 109.47532 * 270.00420 * 3 2 1 5 5 H 1.48503 * 109.47162 * 30.00626 * 3 2 1 6 6 H 1.48499 * 109.47142 * 150.00760 * 3 2 1 7 7 C 1.40142 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.41761 * 120.00166 * 0.27336 * 7 2 1 10 10 O 1.21780 * 120.00367 * 359.72359 * 9 7 2 11 11 N 1.34781 * 120.00254 * 179.72261 * 9 7 2 12 12 C 1.39466 * 120.00258 * 174.48081 * 11 9 7 13 13 C 1.38976 * 120.10460 * 335.11912 * 12 11 9 14 14 C 1.38045 * 119.98635 * 179.97438 * 13 12 11 15 15 C 1.38559 * 120.21160 * 0.02562 * 14 13 12 16 16 Cl 1.73607 * 119.89228 * 179.97438 * 15 14 13 17 17 C 1.38308 * 120.21654 * 0.02562 * 15 14 13 18 18 C 1.38656 * 119.99998 * 359.69748 * 17 15 14 19 19 N 1.40155 * 120.10236 * 180.27020 * 18 17 15 20 20 C 1.36561 * 125.66303 * 129.98958 * 19 18 17 21 21 C 1.34869 * 108.20012 * 179.89441 * 20 19 18 22 22 C 1.40947 * 107.46111 * 0.37226 * 21 20 19 23 23 C 1.34856 * 107.46371 * 359.77142 * 22 21 20 24 24 H 0.97003 * 119.99753 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99660 * 354.48547 * 11 9 7 26 26 H 1.07995 * 120.00652 * 359.97438 * 13 12 11 27 27 H 1.08003 * 119.89727 * 180.02562 * 14 13 12 28 28 H 1.07993 * 119.99814 * 180.02562 * 17 15 14 29 29 H 1.08000 * 125.89763 * 0.04859 * 20 19 18 30 30 H 1.07998 * 126.26451 * 180.12164 * 21 20 19 31 31 H 1.08001 * 126.26421 * 179.74727 * 22 21 20 32 32 H 1.08004 * 125.89638 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 2.4878 2.0465 -1.4000 5 1 1.4379 2.6526 0.7002 6 1 3.5380 1.4400 0.6999 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0010 9 6 1.2981 -2.4414 -0.0069 10 8 0.0803 -2.4414 -0.0069 11 7 1.9719 -3.6086 -0.0131 12 6 1.2794 -4.8142 0.0968 13 6 0.0331 -4.8487 0.7107 14 6 -0.6505 -6.0433 0.8176 15 6 -0.0979 -7.2103 0.3150 16 17 -0.9645 -8.7081 0.4546 17 6 1.1424 -7.1859 -0.2967 18 6 1.8342 -5.9900 -0.4141 19 7 3.0886 -5.9619 -1.0385 20 6 3.4665 -5.0994 -2.0276 21 6 4.7408 -5.3809 -2.3678 22 6 5.1636 -6.4610 -1.5670 23 6 4.1339 -6.7965 -0.7634 24 1 -0.4850 0.8401 0.0004 25 1 2.9385 -3.6102 -0.0939 26 1 -0.4006 -3.9412 1.1040 27 1 -1.6192 -6.0684 1.2946 28 1 1.5696 -8.0975 -0.6876 29 1 2.8519 -4.3241 -2.4605 30 1 5.3282 -4.8744 -3.1193 31 1 6.1344 -6.9337 -1.5926 32 1 4.1355 -7.5886 -0.0293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335842226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = 23.960838 kcal Electronic energy + Delta-G solvation = -20057.831683 eV Core-core repulsion = 16816.643286 eV Total energy + Delta-G solvation = -3241.188398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.62124 -40.69697 -39.09949 -37.42995 -35.43273 -34.65393 -33.88962 -31.11370 -29.80902 -29.71271 -28.29209 -24.44167 -23.99807 -21.94284 -21.26807 -21.11117 -19.62509 -19.18296 -18.04723 -17.73738 -16.63474 -16.58430 -15.83954 -15.61610 -15.19873 -14.93474 -14.62499 -14.52922 -14.43091 -14.16720 -13.46892 -13.28485 -13.13352 -13.04879 -12.90471 -12.84931 -12.75098 -12.51707 -12.06507 -11.94131 -11.14150 -10.88139 -10.51608 -9.96618 -9.43839 -9.14234 -8.77227 -8.45875 -7.10433 -0.08811 0.13311 1.03719 1.37041 1.37332 1.38674 1.54462 1.95387 2.11800 2.16990 2.22395 2.57609 2.71437 3.53414 3.68238 3.93437 4.00765 4.18020 4.32884 4.38439 4.55877 4.70450 4.78759 4.87369 5.11578 5.14810 5.17405 5.35455 5.38474 5.49712 5.77364 5.98836 6.05205 6.07954 6.26983 6.54147 6.66631 7.17284 8.24714 8.45805 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.005453 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.981921 B = 5133.251819 C = 6836.437548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.037 3.963 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.529 3.471 10 O -0.602 6.602 11 N -0.684 5.684 12 C 0.180 3.820 13 C -0.139 4.139 14 C -0.076 4.076 15 C -0.061 4.061 16 Cl -0.055 7.055 17 C -0.074 4.074 18 C 0.060 3.940 19 N -0.397 5.397 20 C -0.034 4.034 21 C -0.195 4.195 22 C -0.199 4.199 23 C -0.017 4.017 24 H 0.282 0.718 25 H 0.402 0.598 26 H 0.133 0.867 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -12.170 -0.254 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.182 4.182 3 Si 0.817 3.183 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.340 3.660 10 O -0.489 6.489 11 N -0.325 5.325 12 C 0.078 3.922 13 C -0.161 4.161 14 C -0.095 4.095 15 C -0.090 4.090 16 Cl -0.026 7.026 17 C -0.094 4.094 18 C -0.034 4.034 19 N -0.070 5.070 20 C -0.161 4.161 21 C -0.220 4.220 22 C -0.223 4.223 23 C -0.144 4.144 24 H 0.092 0.908 25 H 0.238 0.762 26 H 0.151 0.849 27 H 0.170 0.830 28 H 0.177 0.823 29 H 0.160 0.840 30 H 0.171 0.829 31 H 0.181 0.819 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.890 -12.080 -0.090 13.032 hybrid contribution 0.343 0.855 -0.105 0.927 sum 5.233 -11.225 -0.194 12.386 Atomic orbital electron populations 1.70119 1.09510 1.29790 1.32668 1.26940 0.95497 1.04885 0.90920 0.84994 0.78840 0.74791 0.79673 1.18416 1.19336 1.17358 1.20542 0.95418 0.90563 1.52838 0.89565 1.17378 0.87325 0.83296 0.78038 1.90579 1.14994 1.86660 1.56689 1.43928 1.10221 1.03941 1.74400 1.18260 0.94016 0.86108 0.93861 1.21360 0.94760 0.99125 1.00840 1.21159 1.00520 0.89617 0.98215 1.20450 0.94470 0.87901 1.06192 1.98342 1.75988 1.31324 1.96978 1.20708 0.92721 0.96997 0.98987 1.17308 0.88541 0.93616 1.03970 1.41369 1.08807 1.28024 1.28830 1.22023 0.98326 0.99531 0.96205 1.21217 0.94485 1.01652 1.04620 1.21231 1.00065 1.00848 1.00140 1.22464 0.87023 0.99723 1.05218 0.90784 0.76194 0.84920 0.82971 0.82299 0.84019 0.82922 0.81868 0.79776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.13 11.73 21.85 0.26 -44.87 16 2 C 0.04 1.93 5.50 85.33 0.47 2.40 16 3 Si 1.00 38.29 29.56 68.60 2.03 40.32 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 7 C -0.56 -29.98 9.31 23.60 0.22 -29.76 16 8 H 0.09 4.20 7.85 -2.91 -0.02 4.18 16 9 C 0.53 29.11 7.37 85.11 0.63 29.74 16 10 O -0.60 -37.15 12.03 -4.60 -0.06 -37.21 16 11 N -0.68 -31.01 4.65 -311.01 -1.45 -32.45 16 12 C 0.18 7.42 6.38 38.45 0.25 7.66 16 13 C -0.14 -5.77 8.71 22.40 0.20 -5.58 16 14 C -0.08 -2.48 9.82 22.30 0.22 -2.26 16 15 C -0.06 -1.77 6.32 22.36 0.14 -1.63 16 16 Cl -0.06 -1.31 28.95 -2.72 -0.08 -1.38 16 17 C -0.07 -2.13 9.43 22.39 0.21 -1.92 16 18 C 0.06 2.07 6.00 38.26 0.23 2.30 16 19 N -0.40 -12.50 2.62 -346.11 -0.91 -13.41 16 20 C -0.03 -1.10 9.44 83.18 0.78 -0.31 16 21 C -0.20 -5.41 10.86 22.16 0.24 -5.17 16 22 C -0.20 -4.84 10.86 22.16 0.24 -4.60 16 23 C -0.02 -0.45 11.11 83.18 0.92 0.48 16 24 H 0.28 14.42 8.29 -92.71 -0.77 13.65 16 25 H 0.40 16.79 7.24 -92.71 -0.67 16.11 16 26 H 0.13 6.55 5.78 -2.91 -0.02 6.54 16 27 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.16 3.73 8.05 -2.91 -0.02 3.70 16 29 H 0.14 5.13 8.01 -2.91 -0.02 5.10 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -65.39 299.42 5.05 -60.35 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.50 Total: 37.31 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.75 Total: -8.65 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -2.10 Total: -90.73 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.06 Total: -37.21 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.38 kcal Total: -65.39 5.05 -60.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335842226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.309 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds