Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48498 * 109.47060 * 269.99894 * 3 2 1 5 5 H 1.48499 * 109.47327 * 30.00203 * 3 2 1 6 6 H 1.48505 * 109.47043 * 150.00470 * 3 2 1 7 7 C 1.39894 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00074 * 175.55973 * 7 2 1 9 9 C 1.41139 * 120.00325 * 355.55827 * 7 2 1 10 10 C 1.40877 * 120.16371 * 214.78580 * 9 7 2 11 11 C 1.36357 * 119.83566 * 180.02562 * 10 9 7 12 12 C 1.39515 * 120.15988 * 0.02562 * 11 10 9 13 13 N 1.39127 * 119.83420 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99808 * 35.30935 * 13 12 11 15 15 O 1.21654 * 120.00436 * 355.71283 * 14 13 12 16 16 C 1.47130 * 120.00002 * 175.44035 * 14 13 12 17 17 C 1.35137 * 122.49617 * 180.02562 * 16 14 13 18 18 S 1.76186 * 108.21808 * 179.91117 * 17 16 14 19 19 C 1.76055 * 90.16230 * 0.29169 * 18 17 16 20 20 O 1.35492 * 125.17782 * 179.86206 * 19 18 17 21 21 N 1.29250 * 109.64639 * 359.83172 * 19 18 17 22 22 C 1.39506 * 120.33263 * 0.22516 * 12 11 10 23 23 C 1.36365 * 120.16458 * 359.49233 * 22 12 11 24 24 H 0.96998 * 119.99997 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.08177 * 359.97438 * 10 9 7 26 26 H 1.07991 * 119.92181 * 179.97438 * 11 10 9 27 27 H 0.97000 * 119.99938 * 215.30489 * 13 12 11 28 28 H 1.08004 * 125.89043 * 0.02562 * 17 16 14 29 29 H 0.96695 * 114.00004 * 269.96689 * 20 19 18 30 30 H 1.08002 * 119.92471 * 179.72447 * 22 12 11 31 31 H 1.07996 * 120.08630 * 180.25848 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5404 1.4403 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0730 9 6 1.3058 -2.4321 0.0936 10 6 1.8652 -3.5185 0.7946 11 6 1.1809 -4.6948 0.8809 12 6 -0.0699 -4.8240 0.2766 13 7 -0.7619 -6.0275 0.3684 14 6 -0.6805 -6.7676 1.4919 15 8 0.0585 -6.4234 2.3948 16 6 -1.4899 -7.9886 1.6287 17 6 -1.4482 -8.7674 2.7323 18 16 -2.5577 -10.1157 2.4972 19 6 -2.9763 -9.4996 0.9020 20 8 -3.8565 -10.0765 0.0487 21 7 -2.3166 -8.4129 0.6690 22 6 -0.6279 -3.7543 -0.4238 23 6 0.0421 -2.5700 -0.5136 24 1 -0.4850 0.8400 0.0004 25 1 2.8340 -3.4202 1.2619 26 1 1.6086 -5.5286 1.4176 27 1 -1.3030 -6.3339 -0.3761 28 1 -0.8410 -8.5923 3.6082 29 1 -3.4568 -10.7180 -0.5545 30 1 -1.5947 -3.8631 -0.8928 31 1 -0.3929 -1.7414 -1.0526 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336216743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = 1.906553 kcal Electronic energy + Delta-G solvation = -19197.334419 eV Core-core repulsion = 15957.233382 eV Total energy + Delta-G solvation = -3240.101037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51722 -39.15439 -37.66333 -36.91734 -34.49104 -32.90499 -30.25131 -29.59866 -28.93386 -26.14122 -24.51865 -22.67485 -21.34757 -20.53505 -19.83774 -19.29070 -17.98184 -17.29490 -16.93109 -16.13604 -15.81705 -15.15776 -14.94304 -14.51892 -14.18340 -13.89696 -13.44522 -12.86850 -12.72060 -12.24746 -12.14581 -12.11089 -11.69703 -11.36807 -11.15636 -11.01441 -10.73944 -10.19157 -10.02387 -9.87872 -9.55313 -9.46417 -9.22899 -9.09313 -8.89630 -7.54753 -6.86704 -6.61996 -4.34382 0.16466 0.67021 1.19529 1.75260 2.69525 3.07959 3.09059 3.10261 3.14173 3.19058 3.57099 3.80469 3.98384 4.53547 4.70841 4.98516 5.13184 5.55662 5.66791 6.21726 6.43398 6.70023 6.74474 6.88592 7.05694 7.12490 7.19697 7.30009 7.63808 7.74299 7.84362 8.05984 8.25179 8.31114 8.59908 8.69274 8.92329 8.99329 10.28826 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.003037 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.454706 B = 9217.990632 C = 9569.375934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.084 4.084 12 C -0.002 4.002 13 N -0.626 5.626 14 C 0.572 3.428 15 O -0.523 6.523 16 C 0.035 3.965 17 C -0.167 4.167 18 S 0.093 5.907 19 C 0.255 3.745 20 O -0.431 6.431 21 N -0.459 5.459 22 C -0.116 4.116 23 C -0.141 4.141 24 H 0.278 0.722 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.405 0.595 28 H 0.196 0.804 29 H 0.408 0.592 30 H 0.093 0.907 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 -17.602 0.823 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.104 4.104 12 C -0.094 4.094 13 N -0.268 5.268 14 C 0.356 3.644 15 O -0.401 6.401 16 C -0.097 4.097 17 C -0.308 4.308 18 S 0.340 5.660 19 C -0.065 4.065 20 O -0.238 6.238 21 N -0.186 5.186 22 C -0.136 4.136 23 C -0.161 4.161 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.240 0.760 28 H 0.213 0.787 29 H 0.266 0.734 30 H 0.111 0.889 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.420 -17.473 1.779 18.700 hybrid contribution 0.573 0.951 -0.629 1.276 sum -5.848 -16.522 1.150 17.564 Atomic orbital electron populations 1.69766 1.07296 1.28765 1.37896 1.25893 0.94949 1.01206 0.92556 0.86186 0.80235 0.80447 0.79045 1.19517 1.20299 1.18708 1.19508 0.94770 0.90212 1.44533 0.90548 1.17740 0.92256 0.92004 0.88101 1.20800 1.01265 0.94884 1.05627 1.20403 0.92691 0.97881 0.99376 1.17288 0.94373 0.85683 1.12063 1.42788 1.47556 1.20573 1.15836 1.17034 0.82316 0.82055 0.83039 1.90823 1.38984 1.69950 1.40295 1.20206 0.99340 0.99454 0.90685 1.27147 1.02564 0.97278 1.03820 1.85250 1.37260 1.25754 1.17744 1.25000 0.95459 0.92860 0.93198 1.84872 1.30598 1.59106 1.49195 1.66755 1.07692 1.12411 1.31723 1.20336 0.98396 0.93018 1.01876 1.21198 0.97285 0.95526 1.02131 0.91096 0.88485 0.87393 0.75978 0.78651 0.73361 0.88926 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.16 10.60 55.54 0.59 -20.57 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.03 29.56 -169.99 -5.03 14.01 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.28 9.02 -37.86 -0.34 -12.62 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 10 C -0.21 -5.23 9.74 -39.26 -0.38 -5.61 16 11 C -0.08 -2.02 8.61 -39.78 -0.34 -2.36 16 12 C 0.00 -0.04 6.30 -83.60 -0.53 -0.56 16 13 N -0.63 -12.02 5.29 -10.79 -0.06 -12.08 16 14 C 0.57 10.72 7.62 -12.65 -0.10 10.62 16 15 O -0.52 -11.29 14.08 5.23 0.07 -11.22 16 16 C 0.03 0.51 6.67 -84.60 -0.56 -0.05 16 17 C -0.17 -1.97 10.84 29.63 0.32 -1.65 16 18 S 0.09 0.82 23.42 -107.50 -2.52 -1.70 16 19 C 0.26 2.68 8.88 51.68 0.46 3.14 16 20 O -0.43 -3.39 13.64 -18.17 -0.25 -3.64 16 21 N -0.46 -6.21 10.02 -11.35 -0.11 -6.32 16 22 C -0.12 -2.72 9.90 -39.78 -0.39 -3.11 16 23 C -0.14 -3.67 8.62 -39.26 -0.34 -4.01 16 24 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 25 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 26 H 0.11 2.54 6.22 -52.49 -0.33 2.22 16 27 H 0.41 6.79 8.30 -40.82 -0.34 6.45 16 28 H 0.20 2.07 8.01 -52.48 -0.42 1.65 16 29 H 0.41 0.93 9.06 45.56 0.41 1.35 16 30 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 LS Contribution 295.07 15.07 4.45 4.45 Total: -1.00 -31.61 295.07 -7.13 -38.74 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -1.39 Total: 10.76 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.89 Total: -12.42 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.42 Total: -38.97 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.17 Total: -14.86 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.52 Total: -1.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.61 -7.13 -38.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336216743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.646 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds